Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_12G015140 | OGI:12050530 | 6/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr12:19879716-19880800 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCCAACACCACTGTTGCCACGTAAGAGCCTGTCTCCTCGACCAGCACACCGTAAGAGCCCATCTCCTCCATCGTCAAAACATCAGAACTTAGCTTCTTCAATCCCGCTGAAGAAGCGGGGGCGCATGTGTAAAACTTCCCAGATGTCTGAACCACCATCTCTAAAGAAGCCCAAGAAGGCGCCACTGCCTAACATGTTGGTGCCATCTTTGAAGGAAAAAAAGGAGATGAGCAGGAGCATAACATTGCTCCTTAAATATAAAGGGGACAAAATAAAGGAGGCGACAAATGTGAAAGTGCCAGTTGCAGTACACCACTTCAATCGCATGGCAAGACCACTTGCCCCAAAACCACCTATTTCAGACTTCCGACGCACGACCAGGAAAAATGGATTGAAAGAATTTGAGAAAGACGAGGCCAGCAAGAATGTGCAGGAATTTCTGGAAGGTGCAGGCCTCCAAAGTTTGTCTGATGTAGACAATATTGCGAAGTCCCCGTTGGCAGCTCAGTTCAAGCTTGGTTATTCTTTAAGTACCGACGAATATTGCAAGGTCATTGGCAATTGTACTCAGATGAGAAGGGTAGAAGAGTGGTACTTACAGATGGCCAAGGAGGGTAAGGAGATGTTCCCCGTCTTTTACAGGGACGAGGACTTTCATCACTGTGATGGTATAGTTTGGGTCCCATTTAAAGAACTTTTTCAGCTATACAATCTGAGGGAGGTAGACTCATCGCTAATTCAGTTATGGGTATTGTAAGTATACTCGACCCCTCGCTCTTTTTTCTAAGTAGATATCCTCGTTGCATGTTTAATTTTTTCCTTATGCAGAATGGGAGCACTTGAATGTAGAACGGCCCATAACAAACTAGGATTCCTCGATCCACAGAGTCAATTCCACTAAAATTGAGGGAGGCGAAAAGTCCGAAAAAGAAGTGTTGGACTACCTGTACACATCCTTTGTCAAGCTACACGACATGAATACCATCCTTTTGCCCTACCACTTTAAGTAAGTGTGGCACTTATCGCTATACCTCTCATTTGTACTTTAAGATGTTAATTGTTCTCTTCCTTTGTATGTAGGCC
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| CDS seq | ATGCCAACACCACTGTTGCCACGTAAGAGCCTGTCTCCTCGACCAGCACACCGTAAGAGCCCATCTCCTCCATCGTCAAAACATCAGAACTTAGCTTCTTCAATCCCGCTGAAGAAGCGGGGGCGCATGTGTAAAACTTCCCAGATGTCTGAACCACCATCTCTAAAGAAGCCCAAGAAGGCGCCACTGCCTAACATGTTGGTGCCATCTTTGAAGGAAAAAAAGGAGATGAGCAGGAGCATAACATTGCTCCTTAAATATAAAGGGGACAAAATAAAGGAGGCGACAAATGTGAAAGTGCCAGTTGCAGTACACCACTTCAATCGCATGGCAAGACCACTTGCCCCAAAACCACCTATTTCAGACTTCCGACGCACGACCAGGAAAAATGGATTGAAAGAATTTGAGAAAGACGAGGCCAGCAAGAATGTGCAGGAATTTCTGGAAGGTGCAGGCCTCCAAAGTTTGTCTGATGTAGACAATATTGCGAAGTCCCCGTTGGCAGCTCAGTTCAAGCTTGGTTATTCTTTAAGTACCGACGAATATTGCAAGGTCATTGGCAATTGTACTCAGATGAGAAGGGTAGAAGAGTGGTACTTACAGATGGCCAAGGAGGGTAAGGAGATGTTCCCCGTCTTTTACAGGGACGAGGACTTTCATCACTGTGATGGTATAGTTTGGGTCCCATTTAAAGAACTTTTTCAGCTATACAATCTGAGGGAGGTAGACTCATCGCTAATTCAGTTATGGGTATTAATGGGAGCACTTGAATGTAGAACGGCCCATAACAAACTAGGATTCCTCGATCCACAGAGTCAATTCCACTAA
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| Protein seq | MPTPLLPRKSLSPRPAHRKSPSPPSSKHQNLASSIPLKKRGRMCKTSQMSEPPSLKKPKKAPLPNMLVPSLKEKKEMSRSITLLLKYKGDKIKEATNVKVPVAVHHFNRMARPLAPKPPISDFRRTTRKNGLKEFEKDEASKNVQEFLEGAGLQSLSDVDNIAKSPLAAQFKLGYSLSTDEYCKVIGNCTQMRRVEEWYLQMAKEGKEMFPVFYRDEDFHHCDGIVWVPFKELFQLYNLREVDSSLIQLWVLMGALECRTAHNKLGFLDPQSQFH |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_12G015140 | OsN22_12G015140_01 | Chr12 | 19879716 | 19880800 | + | NAM | ||
| CDS seq | ATGCCAACACCACTGTTGCCACGTAAGAGCCTGTCTCCTCGACCAGCACACCGTAAGAGCCCATCTCCTCCATCGTCAAAACATCAGAACTTAGCTTCTTCAATCCCGCTGAAGAAGCGGGGGCGCATGTGTAAAACTTCCCAGATGTCTGAACCACCATCTCTAAAGAAGCCCAAGAAGGCGCCACTGCCTAACATGTTGGTGCCATCTTTGAAGGAAAAAAAGGAGATGAGCAGGAGCATAACATTGCTCCTTAAATATAAAGGGGACAAAATAAAGGAGGCGACAAATGTGAAAGTGCCAGTTGCAGTACACCACTTCAATCGCATGGCAAGACCACTTGCCCCAAAACCACCTATTTCAGACTTCCGACGCACGACCAGGAAAAATGGATTGAAAGAATTTGAGAAAGACGAGGCCAGCAAGAATGTGCAGGAATTTCTGGAAGGTGCAGGCCTCCAAAGTTTGTCTGATGTAGACAATATTGCGAAGTCCCCGTTGGCAGCTCAGTTCAAGCTTGGTTATTCTTTAAGTACCGACGAATATTGCAAGGTCATTGGCAATTGTACTCAGATGAGAAGGGTAGAAGAGTGGTACTTACAGATGGCCAAGGAGGGTAAGGAGATGTTCCCCGTCTTTTACAGGGACGAGGACTTTCATCACTGTGATGGTATAGTTTGGGTCCCATTTAAAGAACTTTTTCAGCTATACAATCTGAGGGAGGTAGACTCATCGCTAATTCAGTTATGGGTATTAATGGGAGCACTTGAATGTAGAACGGCCCATAACAAACTAGGATTCCTCGATCCACAGAGTCAATTCCACTAA
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| Protein seq | MPTPLLPRKSLSPRPAHRKSPSPPSSKHQNLASSIPLKKRGRMCKTSQMSEPPSLKKPKKAPLPNMLVPSLKEKKEMSRSITLLLKYKGDKIKEATNVKVPVAVHHFNRMARPLAPKPPISDFRRTTRKNGLKEFEKDEASKNVQEFLEGAGLQSLSDVDNIAKSPLAAQFKLGYSLSTDEYCKVIGNCTQMRRVEEWYLQMAKEGKEMFPVFYRDEDFHHCDGIVWVPFKELFQLYNLREVDSSLIQLWVLMGALECRTAHNKLGFLDPQSQFH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0551900 | SBH | 0.448835 | 0.946902 | 1.829674 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g36580 | SBH | 0.325926 | 0.544934 | 0.403641 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0551900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0016100 | SBH | 0.000000 | 6.587844 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0295700 | SBH | 0.271296 | 0.132552 | 0.0958965 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0016050 | SBH | 0.000000 | 0.231287 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0016280 | SBH | 0.060207 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0016500 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0015170 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G016460 | SBH | 0.121054 | 1.229021 | 1.396467 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0014900 | RBH | 0.0 | 0.0 | 0.0 |
