Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_12G013720 | OGI:12058290 | 13/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr12:18476488-18477446 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGTCTTGCTACTCTCTGCAATCGAAGGAAGAGGAAACTGGAGCCCCGTGCGACTTGCCAGATTTGTGGTACAGAAGAAGAGGATGGCTTTCATGCCGATATCAGATGTACTCGTGCCAAAGCTCTTCGGGATGAACTTAGGGCAAGCTGGAGGCTGCCTGAAGAGAGTATGCTAGTCAATTCAGGTCCGGATTGGTTGCTCATGATCCTACAGGGGGTCCCAGGTGATGATGGAGCCCAGTTCCTGCTCCTCCTCTGGCGTGCTTGGCACTTGCGGAATGACTGTATTTTCGGCAAGGGTAAGGAGACAGTGTTAGCATCTGCAACCTTTTTGCAGAGCTACTGGGACTCGCAGGCGCAAATTAAGCAAGGCAATGCTACTAAACCTAAAGGGAAGGATACCTTTACTCGACATGCACAAGTGCAGATGAATAGGGGGCCGACTAATATCCGAAAGGTCGGGTGGACAGCGCCCCCGGAAGGATGGGTGAAAGTTAATACTGACGGGGCGTTTATACTCCAATCTAGGGAAGCTGGGGTTGGAGTTATCATCCATGATCATACTGGTAAAGTGCTGATCTCTTCATGGACGTTGCTAAGGAGTTGTGCATCGGCGGAGGAAGCTGAGGCCCTAGCGCTTCGAGATGGTATTCGGCTCCTAGTGGAATGGGTGCGACTCCTGGCAATCCTTGAATTAGATTGTGCAAATCTCGTTAGTGGTCTGGCGGCGTCTGCTCGTGATAGATCGCCTCTTTGGTGTACCCTTCTGGAAGTGAAAGCAATGCTGGCGCTGGCTCAGGATTACAAAATAGTGAAGATCCCTCGTGAAGCTAACCGCGTGGCTCATTGCCTTGCTCACTATGCAATTAGATCTAAAAGTTTGGTTGTTTGGCGTTTCCAAGCGCCCCAGTGTGTTCTTGAGCTCTTAAGGAGTGATTGTAATCAGTCTAGTATCTAA
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| CDS seq | ATGGTCTTGCTACTCTCTGCAATCGAAGGAAGAGGAAACTGGAGCCCCGTGCGACTTGCCAGATTTGTGGTACAGAAGAAGAGGATGGCTTTCATGCCGATATCAGATGGGGTCCCAGGTGATGATGGAGCCCAGTTCCTGCTCCTCCTCTGGCGTGCTTGGCACTTGCGGAATGACTGTATTTTCGGCAAGGGTAAGGAGACAGTGTTAGCATCTGCAACCTTTTTGCAGAGCTACTGGGACTCGCAGGCGCAAATTAAGCAAGGCAATGCTACTAAACCTAAAGGGAAGGATACCTTTACTCGACATGCACAAGTGCAGATGAATAGGGGGCCGACTAATATCCGAAAGGTCGGGTGGACAGCGCCCCCGGAAGGATGGGTGAAAGTTAATACTGACGGGGCGTTTATACTCCAATCTAGGGAAGCTGGGGTTGGAGTTATCATCCATGATCATACTGGTAAAGTGCTGATCTCTTCATGGACGTTGCTAAGGAGTTGTGCATCGGCGGAGGAAGCTGAGGCCCTAGCGCTTCGAGATGGTATTCGGCTCCTAGTGGAATGGGTGCGACTCCTGGCAATCCTTGAATTAGATTGTGCAAATCTCGTTAGTGGTCTGGCGGCGTCTGCTCGTGATAGATCGCCTCTTTGGTGTACCCTTCTGGAAGTGAAAGCAATGCTGGCGCTGGCTCAGGATTACAAAATAGTGAAGATCCCTCGTGAAGCTAACCGCGTGGCTCATTGCCTTGCTCACTATGCAATTAGATCTAAAAGTTTGGTTGTTTGGCGTTTCCAAGCGCCCCAGTGTGTTCTTGAGCTCTTAAGGAGTGATTGTAATCAGTCTAGTATCTAA
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| Protein seq | MVLLLSAIEGRGNWSPVRLARFVVQKKRMAFMPISDGVPGDDGAQFLLLLWRAWHLRNDCIFGKGKETVLASATFLQSYWDSQAQIKQGNATKPKGKDTFTRHAQVQMNRGPTNIRKVGWTAPPEGWVKVNTDGAFILQSREAGVGVIIHDHTGKVLISSWTLLRSCASAEEAEALALRDGIRLLVEWVRLLAILELDCANLVSGLAASARDRSPLWCTLLEVKAMLALAQDYKIVKIPREANRVAHCLAHYAIRSKSLVVWRFQAPQCVLELLRSDCNQSSI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_12G013720 | OsN22_12G013720_01 | Chr12 | 18476488 | 18477446 | + | NAM | ||
| CDS seq | ATGGTCTTGCTACTCTCTGCAATCGAAGGAAGAGGAAACTGGAGCCCCGTGCGACTTGCCAGATTTGTGGTACAGAAGAAGAGGATGGCTTTCATGCCGATATCAGATGGGGTCCCAGGTGATGATGGAGCCCAGTTCCTGCTCCTCCTCTGGCGTGCTTGGCACTTGCGGAATGACTGTATTTTCGGCAAGGGTAAGGAGACAGTGTTAGCATCTGCAACCTTTTTGCAGAGCTACTGGGACTCGCAGGCGCAAATTAAGCAAGGCAATGCTACTAAACCTAAAGGGAAGGATACCTTTACTCGACATGCACAAGTGCAGATGAATAGGGGGCCGACTAATATCCGAAAGGTCGGGTGGACAGCGCCCCCGGAAGGATGGGTGAAAGTTAATACTGACGGGGCGTTTATACTCCAATCTAGGGAAGCTGGGGTTGGAGTTATCATCCATGATCATACTGGTAAAGTGCTGATCTCTTCATGGACGTTGCTAAGGAGTTGTGCATCGGCGGAGGAAGCTGAGGCCCTAGCGCTTCGAGATGGTATTCGGCTCCTAGTGGAATGGGTGCGACTCCTGGCAATCCTTGAATTAGATTGTGCAAATCTCGTTAGTGGTCTGGCGGCGTCTGCTCGTGATAGATCGCCTCTTTGGTGTACCCTTCTGGAAGTGAAAGCAATGCTGGCGCTGGCTCAGGATTACAAAATAGTGAAGATCCCTCGTGAAGCTAACCGCGTGGCTCATTGCCTTGCTCACTATGCAATTAGATCTAAAAGTTTGGTTGTTTGGCGTTTCCAAGCGCCCCAGTGTGTTCTTGAGCTCTTAAGGAGTGATTGTAATCAGTCTAGTATCTAA
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| Protein seq | MVLLLSAIEGRGNWSPVRLARFVVQKKRMAFMPISDGVPGDDGAQFLLLLWRAWHLRNDCIFGKGKETVLASATFLQSYWDSQAQIKQGNATKPKGKDTFTRHAQVQMNRGPTNIRKVGWTAPPEGWVKVNTDGAFILQSREAGVGVIIHDHTGKVLISSWTLLRSCASAEEAEALALRDGIRLLVEWVRLLAILELDCANLVSGLAASARDRSPLWCTLLEVKAMLALAQDYKIVKIPREANRVAHCLAHYAIRSKSLVVWRFQAPQCVLELLRSDCNQSSI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g33140 | RBH | 0.254788 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0006160 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0010720 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0010670 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0006160 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0009980 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0010350 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0013820 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0010590 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0013530 | RBH | 0.0 | 0.0 | 0.0 |
