Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_11G018660 | OGI:11065010 | 16/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr11:24066951-24069133 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAGACACCTTCCATCCAGCTGCAGCCTGGTTTTATGTCCAATCCTCTTGTCATCGATACTCTTAGGAGATTGTCAGCGTCATCCCTTCTCCCAAGCAAGACATAAATATCAGCAAGCATCTTAGAGTTGGCCCTATTTTCTGGATCAAGAGATAAGAGATGTTTGGCTGCTGCTTCTCCGATCACCAAATCTCCACATGAACGGGAAGCGCTTAGCAGCGTCCCCCACAATATTGTATTGTTAATGTGTTCAGAATTATTATATTTAATAAGGTGGTATGCATCAGTCAAACGTCCTGCACGGCAGAGCATATCAACAACACAAGAAATATGCTCAATTTCTGGTTTTAGGCCACACTTCTCTTGCATGTACTTGATCAGTTCCATTCCTTCCTCAACAAGACCTGTGTTTTTACATGCAGATAGTACAGCAAGAAAAGTGTAGTGGTTTGGTTCTGTTTCTGTTTTCTTCATCACCTCATAAAGTTTAACAACTTCATTAACGTGTCCATTCCACGCATATACCTGCATCATAGACGTCCAAGAGATTACATCCTTGACCACAATCCTGCTAAAGACTTCAATTGAATGCCTAAGGCTCCCGCATCGACCATACATGCTAACAAGTGAGTTAGCAATTGCCCTTTCATTCAGGAAACCTCTTCTGACAATCTGAGCGTGTGCTTCCATCCCTGTTTTCAGTGATGGAATTAATGAGATCATAGGTAGGATCTCCAAGTATGTAATAGCATCCGGATCAACACCTATCTTCTGCATTTCTACTACAAATCCAACTGCCTTTTCCACTAGTCCAAGCTCTCCACACCCTTTGATCATAGCGTTCCATGCAAATACATCATCTCTAACTTCTGCAACCCCATATAGAAGACTGACTGATGAATCTAACATTCCGCACTTTGCATACATGTATATTAACGCTGTTACCACAGATGGATCTCTCTTGAATTCAAAACCATTGCAGCACACATAGTTCTCTTCAACCCATTTTCCTTCTCTCCACTCCCCCAACTCAGCGCAGGCCATAATCACATTGAGCAAAATAGACCTAGTGACCAAAACTGTCGAATTTGTCACCATCCAATGGAATAGCTTAAGAGCGGAATCCGGTCTTCCATTCCGAACAAGCCCACCAATCATTGCACTCCAAGTGACAGAATCTTTCACCGCCATCTGACGAAACAACATCACAGCCTCTCTCAAACAGCCAAACTCGACATACAGATCAAGGAGAGCATTGGAAACAAAGAGATTAAGCTGGAAGCCAAGCTTGATTACAATTGTGTGCATCATACCACGGCCCTCCCAGGAACCAAATCCTGCATAACCAGAAACTAGGGTCACCAGTGTCGCCTCAGTCGGGAGCACAACATCCACAGACCTCATCCTCATAAACAGCTCGACGACCTCGCGCAGATGTCCTCCACGTGCATAGCCAGCAATCACCGCATTCCACGCCACAGCATCCCGCTGTGGCATTCCATCGAACACCTTACGAGCGGCGCCCATATCCCCAGCTTCAGCATACATCCCGATCAGCGCCGTCGCGACGAGGAGGTCGGACGCGAACCCTTTCGCAGCGGCCTCCGCCCCGATACGCCAGCCGACCTCGAACTCCGACGCCCGCGCGCACGCCGCCACGGCGAGGTGGTACGTGTGGCGGTCGGGAAGGCACGCCGCCGCCGCCATCTCCCCGAAGACCCCCACCGCCATCCGCGGGAGGCCACCCGCGAGGTACCCGCGGAGCATGGCATTGTAGAGGAGCGCCTTCTGCGGCGCCGCCGCCGTCGCCGCGGCGTCGAACACCTTGCGGGCGGCGCCGGCGTCCCCGAGGCGGAAGTAGCGGGAGACGAGGAGGGACGCGACGTAGCCGTTGGAGGCGAGCCCTGCTACGACGGCGAGCGCGTGCGGCCTGCGGTGGTCGGCGGCGGCGTGGTGGCGGGCGAGGTCGTGGCCGGAGATGGCGGCGGCTAGGGCTTCCTTGAGCGCCTGGTACCGGTATCCCGCGGCGGACATCCACGTCGTCTCCGCTACCCCTCGTCCTCCTCCTCCTCGCCGGAGTTCCCCGGCAGCTCGCCGGCGAGCGGAGCGGCGGTGGTGGGGGTTCTCGTGGCGAGGCACTGGGCGGCGCGGAGGTGGGAGGAAAGGGACGATACTGGGCCGAC
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| CDS seq | ATGTCCGCCGCGGGATACCGGTACCAGGCGCTCAAGGAAGCCCTAGCCGCCGCCATCTCCGGCCACGACCTCGCCCGCCACCACGCCGCCGCCGACCACCGCAGGCCGCACGCGCTCGCCGTCGTAGCAGGGCTCGCCTCCAACGGCTACGTCGCGTCCCTCCTCGTCTCCCGCTACTTCCGCCTCGGGGACGCCGGCGCCGCCCGCAAGGTGTTCGACGCCGCGGCGACGGCGGCGGCGCCGCAGAAGGCGCTCCTCTACAATGCCATGCTCCGCGGGTACCTCGCGGGTGGCCTCCCGCGGATGGCGGTGGGGGTCTTCGGGGAGATGGCGGCGGCGGCGTGCCTTCCCGACCGCCACACGTACCACCTCGCCGTGGCGGCGTGCGCGCGGGCGTCGGAGTTCGAGGTCGGCTGGCGTATCGGGGCGGAGGCCGCTGCGAAAGGGTTCGCGTCCGACCTCCTCGTCGCGACGGCGCTGATCGGGATGTATGCTGAAGCTGGGGATATGGGCGCCGCTCGTAAGGTGTTCGATGGAATGCCACAGCGGGATGCTGTGGCGTGGAATGCGGTGATTGCTGGCTATGCACGTGGAGGACATCTGCGCGAGGTCGTCGAGCTGTTTATGAGGATGAGGTCTGTGGATGTTGTGCTCCCGACTGAGGCGACACTGGTGACCCTAGTTTCTGGTTATGCAGGATTTGGTTCCTGGGAGGGCCGTGGTATGATGCACACAATTGTAATCAAGCTTGGCTTCCAGCTTAATCTCTTTGTTTCCAATGCTCTCCTTGATCTGTATGTCGAGTTTGGCTGTTTGAGAGAGGCTGTGATGTTGTTTCGTCAGATGGCGGTGAAAGATTCTGTCACTTGGAGTGCAATGATTGGTGGGCTTGTTCGGAATGGAAGACCGGATTCCGCTCTTAAGCTATTCCATTGGATGGTGACAAATTCGACAGTTTTGGTCACTAGGTCTATTTTGCTCAATGTGATTATGGCCTGCGCTGAGTTGGGGGAGTGGAGAGAAGGAAAATGGGTTGAAGAGAACTATGTGTGCTGCAATGGTTTTGAATTCAAGAGAGATCCATCTGTGGTATATGCGTGGAATGGACACGTTAATGAAGTTGTTAAACTTTATGAGGTGATGAAGAAAACAGAAACAGAACCAAACCACTACACTTTTCTTGCTGTACTATCTGCATGTAAAAACACAGGTCTTGTTGAGGAAGGAATGGAACTGATCAAGTACATGCAAGAGAAGTGTGGCCTAAAACCAGAAATTGAGCATATTTCTTGTGTTGTTGATATGCTCTGCCGTGCAGGACGTTTGACTGATGCATACCACCTTATTAAATATAATAATTCTGAACACATTAACAATACAATATTGTGGGGGACGCTGCTAAGCGCTTCCCGTTCATGTGGAGATTTGGTGATCGGAGAAGCAGCAGCCAAACATCTCTTATCTCTTGATCCAGAAAATAGGGCCAACTCTAAGATGCTTGCTGATATTTATGTCTTGCTTGGGAGAAGGGATGACGCTGACAATCTCCTAAGAGTATCGATGACAAGAGGATTGGACATAAAACCAGGCTGCAGCTGGATGGAAGGTGTCTAA
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| Protein seq | MSAAGYRYQALKEALAAAISGHDLARHHAAADHRRPHALAVVAGLASNGYVASLLVSRYFRLGDAGAARKVFDAAATAAAPQKALLYNAMLRGYLAGGLPRMAVGVFGEMAAAACLPDRHTYHLAVAACARASEFEVGWRIGAEAAAKGFASDLLVATALIGMYAEAGDMGAARKVFDGMPQRDAVAWNAVIAGYARGGHLREVVELFMRMRSVDVVLPTEATLVTLVSGYAGFGSWEGRGMMHTIVIKLGFQLNLFVSNALLDLYVEFGCLREAVMLFRQMAVKDSVTWSAMIGGLVRNGRPDSALKLFHWMVTNSTVLVTRSILLNVIMACAELGEWREGKWVEENYVCCNGFEFKRDPSVVYAWNGHVNEVVKLYEVMKKTETEPNHYTFLAVLSACKNTGLVEEGMELIKYMQEKCGLKPEIEHISCVVDMLCRAGRLTDAYHLIKYNNSEHINNTILWGTLLSASRSCGDLVIGEAAAKHLLSLDPENRANSKMLADIYVLLGRRDDADNLLRVSMTRGLDIKPGCSWMEGV |
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| Function | Pentatricopeptide repeat-containing protein At3g12770 [UniProtKB/Swiss-Prot:Q9LTV8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_11G018660 | OsN22_11G018660_01 | Chr11 | 24066951 | 24069133 | - | NAM | ||
| CDS seq | ATGTCCGCCGCGGGATACCGGTACCAGGCGCTCAAGGAAGCCCTAGCCGCCGCCATCTCCGGCCACGACCTCGCCCGCCACCACGCCGCCGCCGACCACCGCAGGCCGCACGCGCTCGCCGTCGTAGCAGGGCTCGCCTCCAACGGCTACGTCGCGTCCCTCCTCGTCTCCCGCTACTTCCGCCTCGGGGACGCCGGCGCCGCCCGCAAGGTGTTCGACGCCGCGGCGACGGCGGCGGCGCCGCAGAAGGCGCTCCTCTACAATGCCATGCTCCGCGGGTACCTCGCGGGTGGCCTCCCGCGGATGGCGGTGGGGGTCTTCGGGGAGATGGCGGCGGCGGCGTGCCTTCCCGACCGCCACACGTACCACCTCGCCGTGGCGGCGTGCGCGCGGGCGTCGGAGTTCGAGGTCGGCTGGCGTATCGGGGCGGAGGCCGCTGCGAAAGGGTTCGCGTCCGACCTCCTCGTCGCGACGGCGCTGATCGGGATGTATGCTGAAGCTGGGGATATGGGCGCCGCTCGTAAGGTGTTCGATGGAATGCCACAGCGGGATGCTGTGGCGTGGAATGCGGTGATTGCTGGCTATGCACGTGGAGGACATCTGCGCGAGGTCGTCGAGCTGTTTATGAGGATGAGGTCTGTGGATGTTGTGCTCCCGACTGAGGCGACACTGGTGACCCTAGTTTCTGGTTATGCAGGATTTGGTTCCTGGGAGGGCCGTGGTATGATGCACACAATTGTAATCAAGCTTGGCTTCCAGCTTAATCTCTTTGTTTCCAATGCTCTCCTTGATCTGTATGTCGAGTTTGGCTGTTTGAGAGAGGCTGTGATGTTGTTTCGTCAGATGGCGGTGAAAGATTCTGTCACTTGGAGTGCAATGATTGGTGGGCTTGTTCGGAATGGAAGACCGGATTCCGCTCTTAAGCTATTCCATTGGATGGTGACAAATTCGACAGTTTTGGTCACTAGGTCTATTTTGCTCAATGTGATTATGGCCTGCGCTGAGTTGGGGGAGTGGAGAGAAGGAAAATGGGTTGAAGAGAACTATGTGTGCTGCAATGGTTTTGAATTCAAGAGAGATCCATCTGTGGTATATGCGTGGAATGGACACGTTAATGAAGTTGTTAAACTTTATGAGGTGATGAAGAAAACAGAAACAGAACCAAACCACTACACTTTTCTTGCTGTACTATCTGCATGTAAAAACACAGGTCTTGTTGAGGAAGGAATGGAACTGATCAAGTACATGCAAGAGAAGTGTGGCCTAAAACCAGAAATTGAGCATATTTCTTGTGTTGTTGATATGCTCTGCCGTGCAGGACGTTTGACTGATGCATACCACCTTATTAAATATAATAATTCTGAACACATTAACAATACAATATTGTGGGGGACGCTGCTAAGCGCTTCCCGTTCATGTGGAGATTTGGTGATCGGAGAAGCAGCAGCCAAACATCTCTTATCTCTTGATCCAGAAAATAGGGCCAACTCTAAGATGCTTGCTGATATTTATGTCTTGCTTGGGAGAAGGGATGACGCTGACAATCTCCTAAGAGTATCGATGACAAGAGGATTGGACATAAAACCAGGCTGCAGCTGGATGGAAGGTGTCTAA
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| Protein seq | MSAAGYRYQALKEALAAAISGHDLARHHAAADHRRPHALAVVAGLASNGYVASLLVSRYFRLGDAGAARKVFDAAATAAAPQKALLYNAMLRGYLAGGLPRMAVGVFGEMAAAACLPDRHTYHLAVAACARASEFEVGWRIGAEAAAKGFASDLLVATALIGMYAEAGDMGAARKVFDGMPQRDAVAWNAVIAGYARGGHLREVVELFMRMRSVDVVLPTEATLVTLVSGYAGFGSWEGRGMMHTIVIKLGFQLNLFVSNALLDLYVEFGCLREAVMLFRQMAVKDSVTWSAMIGGLVRNGRPDSALKLFHWMVTNSTVLVTRSILLNVIMACAELGEWREGKWVEENYVCCNGFEFKRDPSVVYAWNGHVNEVVKLYEVMKKTETEPNHYTFLAVLSACKNTGLVEEGMELIKYMQEKCGLKPEIEHISCVVDMLCRAGRLTDAYHLIKYNNSEHINNTILWGTLLSASRSCGDLVIGEAAAKHLLSLDPENRANSKMLADIYVLLGRRDDADNLLRVSMTRGLDIKPGCSWMEGV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.088930 | 0.344759 | 0.319851 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0587100 | RBH | 0.116927 | 0.000000 | 1.263000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g37660 | RBH | 0.105163 | 0.000000 | 0.250387 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0587100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0018650 | RBH | 0.193146 | 0.0 | 0.714624 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0018820 | RBH | 0.067365 | 0.560190 | 0.744098 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0018600 | RBH | 0.000000 | 0.0 | 0.919847 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0018230 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0018630 | RBH | 0.000000 | 5.706893 | 3.220086 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0343200 | RBH | 0.799984 | 2.2963835 | 2.4007255 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0019150 | RBH | 0.000000 | 0.090980 | 0.237273 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0355800 | RBH | 1.1582885 | 2.5289555 | 6.9921625 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0018920 | RBH | 0.000000 | 0.092352 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0019110 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0018580 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0018340 | RBH | 0.064449 | 0.0 | 0.201516 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0018490 | RBH | 0.000000 | 0.786539 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0018830 | RBH | 0.386998 | 3.363339 | 1.264643 |
