Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_10G017730 | OGI:12036030 | 3/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr10:21967946-21971556 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCAGCAGGGTTGGTTATCTAATTGGCTAGTCAAACATGAGGTGGTTCATAGATCTTTGGGCTTCGATCATCGAGGAATAGAGACTTTGCAAATAAAAGCAGAGGATTGGGATTCCATTGCTGTCATTTTATATGTATATGGTTACAATTATTTACGTTCCCAATGTGCTTATGACGTTGCACCCGGTGGATCTTTAGCTAGCGTGTATCATCTTACGAGAATACAGTATGGTATAGATAACCCAGAAGAAGTATGCATAAAAGTCTTTGCCCAAAAGGATAATCCTAGAATCCCATCTGTCTTCTGGATTTGGAGAAGTTCCGATTTTCAAGAACGCGAATCTTTTGATATGGTGGGAATCTCTTATGATAATCATCCACGCCTTAAACGTATCCTAATGCCTGAAAGTTGGATAGGCTGGCCCTTACGTAAGGACTATATAACCCCCAATTTCTATGAAATACAAGATGCTCATTGAATGATAAGAAATTCATGCTCACTTATACAACACAACTCCAGATTTTATGCAAGTCAAGGAATATTTTTACGCTCTGTTCCTAGATGAAACAGAATACCTATTACATTCTAATTAATTCCAATTATACAAAAGGTTCAGATAGACTAAGCAAAAAAGGGCTTCATTTCGTTGGAAAATCACATATTCATTTCCTTCGTATGAACAGAAAAATATGATGACTCAAAGAAGTTCCCTACCACGAACTTTGTACCGCGTGCATTACTTAGAACAACTAGGAAAGTAAGATAAGATAAGCAAGAATAAAAAAATATTTGTCGGAATAGCGGAATAGAAAATTAAGAAATGCAAAAATGCAGAAAAAGAAGTGCCTCTATTTAGAGATTTATCTACTTAGATGAAAAAATCATACTCTATCTATATTATTAACGAATATGTATCCCAACCCATCTCGAGGTATTTGTATCAATACCTATTCGGAAGATCCCTTTTTTCTGTGCCAGGAACCAGATTTGAACTGGTGACACGAGGATTTTCAGTCCTCTGCTCTACCAACTGAGCTATCCTGACCTTTTCTTGTGCATCATCCTAGTAGAGTATTTGTATCTATGTCAATATCCAAAATTTGGAAATGGGGAGGGGGCAGTCCTATGCATTGTACAAAGAAAGCCTATTTAATAATATTTAAATATCGAGTTAATAATCGACATTCCTTGCCGATACTATAATAAAAAAGAAATGTATTCCATTGAATCTTAAACCTATTAATAAAAAAAACAGGATAAATACTAGAGTTAGGGAATAAAAGAGGGTTTGGGGATAGAGGGACTTGAACCCTCACGACTTAGAAAGTCGACGGATTTTCCTTTTACTAGAAATTTCATTGTTGTCAGTATTGACATGTAGAATGGGACTCTCTCTTTATCCTCGTCCGATTAATCCGCTTTTAAAAAGATTTCGAAAACTATGAATTGAAGGATTTGATTACTCAATATTCGATTGGAATGGATTCACAACAATTCTAAAAAAATTATGAATTTTCTATTTCATAATCATTCCTATTTTCATTTTAAAAAAGAATTAAAGAACCTATATTATGATATGAGTTCTGTGATTAATCGTTTGCTATGCCAGTATCTATACGTGTGTATTAGATTTCGAAAGCCCTTCTTTCCCTAATTTAGAAGGGAGTTCCGCTAGCAACACAACGTAATTAACTCGATTCGTTAGAACAGCTTCCATTGAGTCTCTGCACCTATCCTTTTCCTTTGGGTTCTAGTTCGAGAACCGCTTGTTTTCTCAAAACATGGATTTGGCTCAGGATTGCCCCTTTTTTAATTCCAGGGTTTCTCTGAATTTGGAAGTTGCCACTTAGCAGGTTTCCATACCAAGGCTCAATACAATCAAGTCCGTAGCGTCTACCGATTTCGCCATATCCCCATTTTTCTTTGAGACCAGGATTCCTTGTGCAATTTCCTCCATCTGTTAGTTTTTTTTGAATCGTTGAATTCATTACTCTATGTAGTCTAGCGGTTCGTCTCTAGTTGAGAGACTCCGCTTATTGCAATTCAGCATTGAATTGATTCTATCGTTGATGTATTTGCAATTCAATGCGAATCAATATATCCCAAGGTTTTTCTCTCCCCCACCTACCGCGTTCCTTTTTTAGAGTATTCAAAATCATACTATAACGCTTGATATTCATTCTTTTTTTTTGCTAATCAGAATTAGCAATTTCATTTGCTATGATTCTATGTTCTCCTTAGTGAAATATTAATCATTAAATTATTAGCAAATAACAAAAAAAAACAAAATATCTCAAAAAATGTCTATAATGATGGACTGAAAATACAAGAAATTCGCATGTTCTCTTTATTATGTTTTCGTATATATATTATTTATTCTTTTCCATGTATTAGATTATTCGTCCGAGCCATATCAAATTAAAAATATCTAAAATCAAATTCAATATAGAAATTGGAATAGATTCTATTAGAAAAATAGATTTGCGAATTAGAGAAAAAAGAAAGTTCAAAAAAATCTATCTAACTTTATTTTATGAAGTTCTAGTATTTTTTTCTAAGTAGAACTTCCAATTTCGAACTAGTTAATAGCTAAGATTAATAATTAAGATCTGACATTTTACGGATTTCCTATACTATACATATTTCTATTTGTTACACTATTTCTGTTATGTAAGCCCACTTAGCTCAGAGGTTAGAGCATCGCATTTGTAATGCGAGGGTCATCGGTTCAAATCCGATAGTCGGCTTTTTTCTCTATCAATGTTCCATGAACAAAAATACCTCTTTTTCTCCGAATTAAATGGAGAAGCCAGGATCTATTATGTCGTTCTACCCTACAATTTTGCTAGATACAAAACAATAAAATAAATAATATATATACAAAAATTCAGATGTTGATGAAATTCCATTTTTTTGTGGTACTTTTAGTAGATTTACTCTGTTTATCCTTTACTTTAATTCAGTTTTAATTTCGATGTATTCTGTAATGTAAATACAATGAAATTAATTGTGTAAAATGAAATTTCAATAAAAAAAGGAGTCTTCATGTCCCGTTATCGAGGACCTCGTTTTAAAAAAATACGCCGTCTGGGAGCTTTACCAGGACTCACTAGAAAAACACCTAAATCCGGAAGTAATCTGAAAAAGAAATTCCATTCTGGGAAAAAAGAACAATATCGTATTCGTCTTCAAGAAAAACAGAAATTGCGTTTTCATTATGGTCTGACAGAACGACAATTACTTAGATATGTACATATCGCTGGAAAAGCAAAAAGTTCAACAGGTCAGGTTTTACTACAATTACTTGAAATGCGTTTGGATAATATCCTTTTTCGATTAGGTATGGCTTCAACCATTCCCGAGGCCCGGCAATTAGTTAACCATAGACATATTTTAGTTAATGGTCGTATAGTCGATATACCAAGTTTTCGTTGCAAACCCCGAGATATTATTACTACGAAGGATAACCAAAGATCAAAACGTCTGGTTCAAAATTCTATTGCTTCATCCGACCCGGGGAAATTGCCAAAGCATTTGACGATTGACACATTGCAATATAAAGGACTAGTAAAAAAAATCCTGGATAGGAAGTGGGTCGGTCTCAAATAA
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| CDS seq | ATGCAGCAGGGTTGGTTATCTAATTGGCTAGTCAAACATGAGGTGGTTCATAGATCTTTGGGCTTCGATCATCGAGGAATAGAGACTTTGCAAATAAAAGCAGAGGATTGGGATTCCATTGCTGTCATTTTATATGTATATGGTTACAATTATTTACGTTCCCAATGTGCTTATGACGTTGCACCCGGTGGATCTTTAGCTAGCGTGTATCATCTTACGAGAATACAGTATGGTATAGATAACCCAGAAGAAGTATGCATAAAAGTCTTTGCCCAAAAGGATAATCCTAGAATCCCATCTGTCTTCTGGATTTGGAGAAGTTCCGATTTTCAAGAACGCGAATCTTTTGATATGGTGGGAATCTCTTATGATAATCATCCACGCCTTAAACGTATCCTAATGCCTGAAAGTTGGATAGGCTGGCCCTTACAAAAATATGATGACTCAAAGAAGTTCCCTACCACGAACTTTGTACCGCGTGCATTACTTAGAACAACTAGGAAAGAGTCTTCATGTCCCGTTATCGAGGACCTCGTTTTAAAAAAATACGCCGTCTGGGAGCTTTACCAGGACTCACTAGAAAAACACCTAAATCCGGAAGATAACCAAAGATCAAAACGTCTGGTTCAAAATTCTATTGCTTCATCCGACCCGGGGAAATTGCCAAAGCATTTGACGATTGACACATTGCAATATAAAGGACTAGTAAAAAAAATCCTGGATAGGAAGTGGGTCGGTCTCAAATAA
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| Protein seq | MQQGWLSNWLVKHEVVHRSLGFDHRGIETLQIKAEDWDSIAVILYVYGYNYLRSQCAYDVAPGGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRIPSVFWIWRSSDFQERESFDMVGISYDNHPRLKRILMPESWIGWPLQKYDDSKKFPTTNFVPRALLRTTRKESSCPVIEDLVLKKYAVWELYQDSLEKHLNPEDNQRSKRLVQNSIASSDPGKLPKHLTIDTLQYKGLVKKILDRKWVGLK |
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| Function | NAD(P)H-quinone oxidoreductase subunit J, chloroplastic [UniProtKB/Swiss-Prot:P0C340] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_10G017730 | OsN22_10G017730_01 | Chr10 | 21967946 | 21971556 | + | NAM | ||
| CDS seq | ATGCAGCAGGGTTGGTTATCTAATTGGCTAGTCAAACATGAGGTGGTTCATAGATCTTTGGGCTTCGATCATCGAGGAATAGAGACTTTGCAAATAAAAGCAGAGGATTGGGATTCCATTGCTGTCATTTTATATGTATATGGTTACAATTATTTACGTTCCCAATGTGCTTATGACGTTGCACCCGGTGGATCTTTAGCTAGCGTGTATCATCTTACGAGAATACAGTATGGTATAGATAACCCAGAAGAAGTATGCATAAAAGTCTTTGCCCAAAAGGATAATCCTAGAATCCCATCTGTCTTCTGGATTTGGAGAAGTTCCGATTTTCAAGAACGCGAATCTTTTGATATGGTGGGAATCTCTTATGATAATCATCCACGCCTTAAACGTATCCTAATGCCTGAAAGTTGGATAGGCTGGCCCTTACAAAAATATGATGACTCAAAGAAGTTCCCTACCACGAACTTTGTACCGCGTGCATTACTTAGAACAACTAGGAAAGAGTCTTCATGTCCCGTTATCGAGGACCTCGTTTTAAAAAAATACGCCGTCTGGGAGCTTTACCAGGACTCACTAGAAAAACACCTAAATCCGGAAGATAACCAAAGATCAAAACGTCTGGTTCAAAATTCTATTGCTTCATCCGACCCGGGGAAATTGCCAAAGCATTTGACGATTGACACATTGCAATATAAAGGACTAGTAAAAAAAATCCTGGATAGGAAGTGGGTCGGTCTCAAATAA
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| Protein seq | MQQGWLSNWLVKHEVVHRSLGFDHRGIETLQIKAEDWDSIAVILYVYGYNYLRSQCAYDVAPGGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRIPSVFWIWRSSDFQERESFDMVGISYDNHPRLKRILMPESWIGWPLQKYDDSKKFPTTNFVPRALLRTTRKESSCPVIEDLVLKKYAVWELYQDSLEKHLNPEDNQRSKRLVQNSIASSDPGKLPKHLTIDTLQYKGLVKKILDRKWVGLK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.683470 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g38212 | SBH | 84.552719 | 84.677933 | 15.306812 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0036380 | SBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0007850 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0036270 | SBH | 0.000000 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0035660 | SBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G017750 | RBH | 26.270687 | 6.528390 | 41.503731 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0009680 | RBH | 153.508713 | 0.000000 | 226.937988 |
