Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_09G020710 | OGI:09066310 | 16/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr09:24067600-24069802 | ||||||||
| Gene Symbol | IF1-2 | ||||||||||
| DNA seq | ATCATCATCAGTAGGGGAGTTGGGAGAGAGAGACAGTTTCACGGAGCCAACGAAGCGAAGATCCTCTCGTCTCGTGTTCTAGGGTTTCTCGCGGCGATGGAGGCGGCGGCTAGGGCTCCATCCAGGGCGGCGGCGAGGTTCGTGCAGCGCAGGCTCTTTTCCTCCGGCGGCAAGGTGCTCGGCGAGGAGGAGAAGGCCGCCGAGAACGTCTACATCAAGGTATCTTCCTTCCATCTCTCTCCCTCTCGGGTGCGGGCGCGCGATTCCTGTCTGAGATGCGTATGCGCTGTGATCTGTGGGCTCGAGTTGAGCGGTGTGTGGATTTCACCTAGTTCCGCAAATCTGGGACTTGAGAGATCTTTCTTTCCTGTACGAGTCCCCCTGCCCGCACTGCACTCAGCTCTGGGATCCCCAAATGTTTTCGGCCTGCATTGTTGCAGTGCACGCCTAGGAATATATTATACGTCTGCCTGTTTACTGATCTGGAATACAGTTGAGTTGGCTGTCGTCCTGCCTGCATCCCTCATCCATTAGCACAGCAATTTATGACTGATATATGTTCACCCTGTGCCTTGCTTCACATATGCTATTGCGGTTGCAATGTTGCATCAAAATTCTTTCCTGTTAGATTATTCTTGCATTTTTTTTGGCCTAATTGAGACAGATTCTTGCTTGCTACTTGAACATACCCTGTTTGATTTACATTATTGAGTAGATTGTTGCCACCGATTATCTACTTGATTATAGGGACAAATTAAATATTTTGAGAAATGAACTTAACAAATAACTTAAAACAATTGGTTTAAGGTCAGTTTTATGTGGGTTTTTTTTTTCTTCATGAGAAGCAGAGCAGGGTTGTTCTCCTGGTTTTATAAAAAAGATCGTTCAAATATTACTCATTCAACATTTTGTACAATAGTCAAGCTGTTCTTGTTTTAATTATCTATATCTGTGATCTTCTATGCTGGTTGCTCAATTATACTCTTTTGAAGCACTGCAGTAGCTGGCCTGATGTTATTCTAGTGATCCTCACAAACGTACTGCTGGCACTGATTTGTTTTCTCCATTATGTATTTGTACTACTGCTGTTTCAATTGGATCGTTGCTGGCATCCCATATTTTGCTTGGCTTTCTGTGGAAGTGTGAATACAGTCTTATCTCAGGACTGACTGTTGATGCTTATGCTTTGTGATATTAGTTTCTTCTTTTTAAGGCATGGCCATTTTTTAGTTCCTTTTGTTCTTTGATTGCCTTTAAGGACCGCAAATGTATATCTAAAAGTACATTTGATGCTCGGAATTTTGTAACTCTGCAGACAGATGTAGATGTTCTTTTAGAATCAATCATTGTTTCTTTCAAATAGAAACCTTTTCCGAAATTACCCGCTTTCTTAATCGTTGCGAACTTCTGTTTTAGAATGTATCTTGACGCTATGCTAACAACATGCATGGTGACTTACTGCAGAAAATGGAACACGAGAAGCTGGAGAAGTTGGCCCACAAGGTATGCAAACATATTGCCTCTCTTAAAACTTGATTGGGCAGTGCCTTTAATGGCTCACTCTCATAAGTCCTCTCAGCTTTTTTTTTTTCATGCACAAGAGATTATGCATTCTTTTATATGTTGTCATACATTTATAAGATTTGTTTTCGTTGGATATTCATGTTTTGAACTTAATACAAGCTAGTATCTGCTTTGAGTGGGCGAGGGAAATGAAACTGTTCTAGTTCTTGCGCTTACAATAGATGTGAGCTACTTTCAGGGCCCCAACCCAGGAGAGCAAGCTTCAACCGCAGGTGCTGCGGCTAACGCTGTGAAGACTGGAAGCGGCTCAACGGAGTCAAGATCTGCTGGTGTGTCAACTGACAAAAACAGGAACTATGCTGTCCTGGCAGGCACTGTTGCTGCTTTGAGTGGCCTGGGGTGGTATCTCTTGTCAAAGCCTAAGAAGTCTGAAGATATAGTGGACTGAAGGTGGTTAATGAGATCCTAGACGGTCTGTCATTGAGTTTCACCCTGTTTTACTTGTTTAGAAATAAATGCTGAACACACTGCACTGAGTTTCCTATAGCATCACTAAAACTTTCAAGTATGCACCCGAGATATGTTCTCAGTTCTTCATGCCCTGTTTTGACTGTTGGCACTGTTCTCTGATGCTGCATCCTTTTGATTGAAGAGGAATTCGGATACAAGATAGTACATG
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| CDS seq | ATGGAGGCGGCGGCTAGGGCTCCATCCAGGGCGGCGGCGAGGTTCGTGCAGCGCAGGCTCTTTTCCTCCGGCGGCAAGGTGCTCGGCGAGGAGGAGAAGGCCGCCGAGAACGGCCCCAACCCAGGAGAGCAAGCTTCAACCGCAGGTGCTGCGGCTAACGCTGTGAAGACTGGAAGCGGCTCAACGGAGTCAAGATCTGCTGGTGTGTCAACTGACAAAAACAGGAACTATGCTGTCCTGGCAGGCACTGTTGCTGCTTTGAGTGGCCTGGGGTGGTATCTCTTGTCAAAGCCTAAGAAGTCTGAAGATATAGTGGACTGA |
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| Protein seq | MEAAARAPSRAAARFVQRRLFSSGGKVLGEEEKAAENGPNPGEQASTAGAAANAVKTGSGSTESRSAGVSTDKNRNYAVLAGTVAALSGLGWYLLSKPKKSEDIVD |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_09G020710 | OsN22_09G020710_01 | Chr09 | 24067626 | 24069753 | + | NAM | ||
| CDS seq | ATGGAGGCGGCGGCTAGGGCTCCATCCAGGGCGGCGGCGAGGTTCGTGCAGCGCAGGCTCTTTTCCTCCGGCGGCAAGGTGCTCGGCGAGGAGGAGAAGGCCGCCGAGAACGGCCCCAACCCAGGAGAGCAAGCTTCAACCGCAGGTGCTGCGGCTAACGCTGTGAAGACTGGAAGCGGCTCAACGGAGTCAAGATCTGCTGGTGTGTCAACTGACAAAAACAGGAACTATGCTGTCCTGGCAGGCACTGTTGCTGCTTTGAGTGGCCTGGGGTGGTATCTCTTGTCAAAGCCTAAGAAGTCTGAAGATATAGTGGACTGA
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| Protein seq | MEAAARAPSRAAARFVQRRLFSSGGKVLGEEEKAAENGPNPGEQASTAGAAANAVKTGSGSTESRSAGVSTDKNRNYAVLAGTVAALSGLGWYLLSKPKKSEDIVD |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_09G020710 | OsN22_09G020710_02 | Chr09 | 24067600 | 24069802 | + | IsoSeq | ||
| CDS seq | TCATCATCAGTAGGGGAGTTGGGAGAGAGAGACAGTTTCACGGAGCCAACGAAGCGAAGATCCTCTCGTCTCGTG |
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| Protein seq | SSSVGELGERDSFTEPTKRRSSRLV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.363608 | 40.014091 | 7.070034 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0568900 | RBH | 1.743599 | 1.358081 | 23.440907 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g39550 | RBH | 0.968000 | 0.724082 | 5.085690 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0568900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0020290 | RBH | 0.907649 | 58.383820 | 17.377213 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0020340 | RBH | 0.739763 | 24.629591 | 10.921922 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0020550 | RBH | 3.394208 | 91.147324 | 30.636505 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0020310 | RBH | 0.358363 | 2.648147 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0020540 | RBH | 16.029255 | 80.267174 | 66.352760 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0384400 | RBH | 26.563405 | 40.930843 | 76.1263125 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0020320 | RBH | 0.312104 | 7.602394 | 3.719789 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0373900 | RBH | 28.4440975 | 19.772336 | 79.4214515 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0020380 | RBH | 0.693843 | 0.590597 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0020120 | RBH | 2.287723 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0020130 | RBH | 0.000000 | 45.970150 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0020160 | RBH | 1.528504 | 0.0 | 6.849595 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0020300 | RBH | 0.797687 | 28.488253 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G024840 | RBH | 0.659316 | 5.166067 | 4.094604 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0020460 | RBH | 2.295881 | 56.316483 | 51.654301 |
