Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_09G017910 | OGI:09061440 | 4/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr09:22135710-22138199 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGATATAATTACAATCAGCAATGTTAGTCGTTAAAATAAATTGTGATGGCTTGGTCAACCACTAAAATGGACCAATGTATTATCCTCTGAACTATTCATCTTTGCACTTGGATCCTTCCACCTTCTGGTTGCTGATATAGACCCCTTGATAGGTAAGCATAAAACCTTTTCTTCTATCCCACATTAGCATCTCTGAAACTAACTAGGATTTCAGCTGAGCCATTTAAAAGTTCCATCCAGCAGGGCAGCAGCTCTTCTTTCAAGCCCATTTTTTACTGTAGAAAGTTATAAAATCTTATGTCCCTGTTCCCATGTTTTGGTTTTATCTGATTACCAGGCCTTGACAAAGTTCTGCTTTGTATGGACTGTATATCGGTATTAGCGTTGTGTTTCTATATATTTAACACAGTTTTTGTTGTTAGTCTGTTGCATGAATGCTATAAAATATCAATATACACAACGCATGATATGCTGGTATAGATCCCTGTTTCTGATGACATCGTATTGTTTTTATCTTGATTTTTTTAGTTTTATGTAATGTATCATGTATTCAATGTACTTGTTTTCTTCTTCCTGTATTTCCTGTGCAACTAAGTTCCTAATTTAATTGTTTTGAAACATATATTGGCAGTATACCTCTGTTGGTCATTAGGGTCATTCGGTTCTTCCTGTGCATGGCTTTGGAGCTTCCCTACAGCATTTTTGTGATAATATAGGTGCCATTGCTGATCAGGAATGCCGAGTTTGGACAATTACCCTTCTTGGCTTCGGGAAATCAGAGAAACCAAATATCAACTATTCAGAACTACTATGGTCAGAATTACTGAGAGACTTCATTGTTGATGTTGTGAAGGAGCCTGTTCATCTTGTTGGTAACTCAATCGGAGGTATAAATCTTTCGATATTTCTGGGGGTGATGGGCAACACATCGTTTACCCAAAACAACCTTAATTAATTCATTTCTTCATAATATTTTCAGGTTATATCTGTGCTATTACTGCTGGCTTATGGCCTTCTCTTGCAAGGTCTCTGATCCTTTTGAATACAGCTGGTTCAGTTGTGCCAAGTTACTCTTTTATTCCATTAAGTGAAGTAAGGCGACCAGCATTCACTGAAACTGTTCTATATTTGAATTATTTTTGTTAGTACATGTTATCTGAATGATACTCATAGGTCAAAGACTTACTGATATTTCATTAGTAACAGTGGCACTGGTTAGTGGCTATATGCTTATTATAAAAAAAAATGAGTGAAAATATTGTATCTTATTAATTGTTTGAGGCATTGTATTCACACGGGTTCTTTCTCATACATTTTCGTGTTACTTTAGACTTAGTACGATTGAAAATATGCACACTAAAATCTCAGCAGTTTTTTTTTTGGGCTAACCTAGCGTACGCCCCTCTATTGTAAAAACTGTTGTATAATTCAAATGCAATGTGCATGTTATTTCTAGTTTGTTGGAATTATTAAAGCATTTAAACTCTGAATAGTAGCATAGATAAGGCTAACAATTTCATGTTTCAGATACATATCTTTTGTGCTTATATCAACCAGTGTTTGTGGAATGATAATCTGACAGCAACAAAAATAAATCGTACTATTTAGGATCGAATTTTTAGCACTGGAACAAATTTCTTCTGCTTCAAATTAACTCAATGCTACTGAATGAAAAATACGAACAGGAAGGAAGGACTTCATGGTTTTCCAGTTTGCAGGCACGCCTCCTTCTGCTCTTCTTGAGGTCAAGAGCAGGAGGCATTCTAAAGGAATACTATCCTACAGTACGTGTATTTTGTGGCTATTGCTTCCTCAAATATTGAAATAGTACATAGTTACTAAGCAATACCAAAAAAAATCATATGCAGAGAACTGAACGAGTTGACAAGCCACTTGTGGATGAGATAATAAGAGCTGTATCCTCAGATCACAAAGTATATTTATCATAGACTTAACTGTCAATATATGCAGTATAGCCTGCAATTCTTTTTCCTTGACAGACAAATTCAGTCATATGACCTGGCGCAGCAACCGTTATTGAGAGCGTATTCAATTTCAATCTTTCCATTCCTCTCAATTTTTTATTAGATTCTTTTAGTGGAAAAATCTTAATTGTCCAGGTATTTTCTGACTCCATGCTGTGCGAATGGATCAAAAGAGACTGGCGCTTAGCCAGCAAAGAAGACGAGATGCAATTCGCACTCCGGGTGAACTTTCTGGTGGTTCTTAAAGCTGTTTTTGTTTATGGACCTAGCTCAAAATCAACCTTGAACCCTACATTACAAGAGTTGTTTAAATCTAATCATACAAGCTTTTGACCCCATCGTGCAAGTAATGTCTAATCGTGCCACATTTGAACTCTCTTGTAGCCTTGTTTTATATGGCTCGACATAGATAGAAGTACAAAATGAACGAATATTTCATGCCAATTGGGTGCGTTCTTTCATCTGTTCCAAATTGTCTTTCAAGGCAGTGGCTAACACCCTAG
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| CDS seq | ATGGACCAATGTGCCATTGCTGATCAGGAATGCCGAGTTTGGACAATTACCCTTCTTGGCTTCGGGAAATCAGAGAAACCAAATATCAACTATTCAGAACTACTATGGTCAGAATTACTGAGAGACTTCATTGTTGATGTTGTGAAGGAGCCTGCACGCCTCCTTCTGCTCTTCTTGAGGTCAAGAGCAGGAGGCATTCTAAAGGAATACTATCCTACAGTATTTTCTGACTCCATGCTGTGCGAATGGATCAAAAGAGACTGGCGCTTAGCCAGCAAAGAAGACGAGATGCAATTCGCACTCCGGTGGCTAACACCCTAG |
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| Protein seq | MDQCAIADQECRVWTITLLGFGKSEKPNINYSELLWSELLRDFIVDVVKEPARLLLLFLRSRAGGILKEYYPTVFSDSMLCEWIKRDWRLASKEDEMQFALRWLTP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_09G017910 | OsN22_09G017910_02 | Chr09 | 22135778 | 22138199 | + | NAM | ||
| CDS seq | ATGGACCAATGTGCCATTGCTGATCAGGAATGCCGAGTTTGGACAATTACCCTTCTTGGCTTCGGGAAATCAGAGAAACCAAATATCAACTATTCAGAACTACTATGGTCAGAATTACTGAGAGACTTCATTGTTGATGTTGTGAAGGAGCCTGCACGCCTCCTTCTGCTCTTCTTGAGGTCAAGAGCAGGAGGCATTCTAAAGGAATACTATCCTACAGTATTTTCTGACTCCATGCTGTGCGAATGGATCAAAAGAGACTGGCGCTTAGCCAGCAAAGAAGACGAGATGCAATTCGCACTCCGGTGGCTAACACCCTAG
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| Protein seq | MDQCAIADQECRVWTITLLGFGKSEKPNINYSELLWSELLRDFIVDVVKEPARLLLLFLRSRAGGILKEYYPTVFSDSMLCEWIKRDWRLASKEDEMQFALRWLTP |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_09G017910 | OsN22_09G017910_01 | Chr09 | 22135710 | 22138199 | + | NAM | ||
| CDS seq | ATGGATATAATTACAATCAGCAATGAATGCCGAGTTTGGACAATTACCCTTCTTGGCTTCGGGAAATCAGAGAAACCAAATATCAACTATTCAGAACTACTATGGTCAGAATTACTGAGAGACTTCATTGTTGATGTTGTGAAGGAGCCTGCACGCCTCCTTCTGCTCTTCTTGAGGTCAAGAGCAGGAGGCATTCTAAAGGAATACTATCCTACAGTATTTTCTGACTCCATGCTGTGCGAATGGATCAAAAGAGACTGGCGCTTAGCCAGCAAAGAAGACGAGATGCAATTCGCACTCCGGTGGCTAACACCCTAG
More
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| Protein seq | MDIITISNECRVWTITLLGFGKSEKPNINYSELLWSELLRDFIVDVVKEPARLLLLFLRSRAGGILKEYYPTVFSDSMLCEWIKRDWRLASKEDEMQFALRWLTP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.619981 | 1.817546 | 0.215973 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0532700 | SBH | 13.351435 | 9.863537 | 6.315846 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g36240 | SBH | 9.179013 | 5.907640 | 1.472292 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0532700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0350300 | RBH | 0.8788725 | 2.4017075 | 1.2100085 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0017590 | SBH | 0.922614 | 0.293244 | 2.974820 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0338600 | SBH | 0.971669 | 2.698415 | 3.126566 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0017660 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0017440 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G017890 | RBH | 1.508702 | 0.926498 | 3.964863 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0017740 | SBH | 4.034605 | 3.038103 | 3.714351 |
