Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_09G015440 | OGI:09056050 | 16/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr09:20330973-20333303 | ||||||||
| Gene Symbol | OsTKPR1, TKPR1, OsDFR2, DFR2, OS-DFR2, OsDFR2A, DFR2A | ||||||||||
| DNA seq | GGTCAAGCAAATAGTATCAGGTTCCATGTAATCCACGGAATTCTTTTAATTAGCAAGACAATAACTAGAATTATTAAGGGAGAACTGAAAATGATAAAGATACACATTGCTACCAATCATTTACAGCTGCCAGAGTAACCAGGCGAACTCCAAGTAAGAAACAAATGATTGATTCCAAAACTTTTAACCCTAATAGCAGCAGCTAACGTTTCAACGAGTAGCTCGTCCCAGAAAATGCTTGGAACTTGGGCTCTTCCTTCTTTGCAAGTTCATCAACTTTAACAGGAGGAGCCTTCTCTGGTTCTTTGCTGCTGCTGCTGCTTTTGTTTGAACCAAAAACAAGCTTCCCCTTTTTCTGACGTGTAGAGTTGCTAACTCCTGATGCTGCTGTCTCCTGATTCACCTTCTTGTTCGAGTCTGAAATTGCAGAACTTGCAGCAGCAGGATTAGAAGAGATCCCTGCTGCTAGCGGTTTTGAGGCCTTACCATCCAAACGATTCCCTGAACCAGTGAATGCTCTGAATTCTGGCTCATCTTTGATTTGATCTTGATCTTCGGAAGCCGCCTTGCTTGAAGGAACAGATGGTTTCTGCTGAACCTTTTCAGGTTCTTTGTAATCGAGTGGAGGTGCGAAATCGACCTCGCAATCCGTCTCGATGATGCAGACGGCCGAGGCGGGCTTCGTCTCGATGATGTCGATGAGGAACTCCTTGTTGTTGTAGGCCACCATGATGGTGTCGCCGGTGGTGAGGCAGGTGAAGCTGCGCAGCGTCTTCTCCAGGACGGCCTTGGGGTTCGCCGTGTCGAGGAAGTCGCCGGTGTGAGGCTGCAGCTTGGCGTAGCTGCCCTTGGGGAGGCTGGCGCTCCTGACGACGACGAGGCCGCCGTCGTCGAGGCGCATGCCGCGCATCATCCACCGCGGCATGATCACCGTGCCCTCGTCGGCGACGAACTCCAGCACGCCGCAGTGGGTGACCCGGTGGGCGGCGGCGTCGCCGTGGTGGGAGAGCTCGAACAGCATCGGGTAGTCGATGTGGAGGGAGGCGAGGCGGTGGAGCGCCGACGCCGGCATGATCACCTTGTCTCCGCCTTCGAGCTGCGGCTTGTTGAAGGCCGCCGCCGAGTAGCACCGGTACGTCTGCTCGAAGCCTCTCCCGCCGTGTCCTCCATAGCCATGCAGAATCCGGGAAAGCATCTCGTCGTCGTCGGCGGCGGCGAGCGGAGATGCGGTGCGGTGCGGCGTCGACGCGAGGAAGGAGGGGACGCGGGCTTATGAGGGCGGTTCGTTGATCCGAACTTGGCGAGGATTCGATTCCGAGAGCCCCGAGACGCGGATGGGTAGGAGAAGAACTCGCAACAAGATTCGGTTTAGAAATCTAAAATTGATTCGGATTTGGGACGAACAATAGTAGTGCTTCAATCTGATTCGCGTTTCGCGGCGAGGGCGTCGAGAACACCATGGAAGCTGCTGAACCTGGCGCCGACGACGTCGACCTCGATGCCCAGCCTCCTGACGCCGTCGGCGGTGACGGGGCCATGCGCGGCGACGACCATGCGGGGCCAGCGCGCGCGCAGCCGCGGCCAGCTCCACCCCGCGGCGTCCAGCCCCTTGAGCAGGCCCTCCACCTCGGCGGTGGAGGTGAACACGACGGCGTCGGGCGCCGCGGCGTCCACCAGAGCCTCCGCGCAGCGCGGCCCCGCCCAGCACGTGACGTACGCCGGCGCGCGCACGGCGACCCACCCGGCCGCCTCCAGCCCGGAGAGGAAGCCCGGCACGACCGGCGGCTCGCGTAGGCCGACGACGTCGGGCACGGGGCAGAGCACGCGCCTGCCGGACCCGCTCCCCAGCGCCTCCACGAGGCCGGCCGGGGTGGGGACGTCGGGGACGAGGACCGACACCCTCCCGCCCGCGTCGCCGCAGAGCCTGGAGAGGAACGCCGCGTCGAGGAGGTCGGCGTCGCTGCCGAGGGCGGCGACGGTGAAGGGTAGCGCGGTGGCGGCGTCGGAGACGGGGTGCCGCGGCCGCCGCGCGGGGGAGGAGGAGGAGGACGGGAGGAGGGCGCGGGAGAAGGCGGAGATGCCGGAGCGCGAGGTGAAGGCGAGCGCCGCGAAGGCGTCGAGGCCGCCCGGCGCGACGAAGGGGCGGAGGATGTCCGGGTCGTGCGCGCGGATGGCGATGGTGGGCACCGGGACCGGCCGCGCGCCGCGCTGCCGCAGGATGGCGTGGAGCCGGCCGCCGTAGCCGCCGCCGCCGGCGTCGGTCTGCGGCGTCGTGAACGCCACCCGCCGCCCGGCCAGCGACAAGGTCTCCGGCTGCGCCATCCCTCCCGT
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| CDS seq | ATGCTTTCCCGGATTCTGCATGGCTATGGAGGACACGGCGGGAGAGGCTTCGAGCAGACGTACCGGTGCTACTCGGCGGCGGCCTTCAACAAGCCGCAGCTCGAAGGCGGAGACAAGGTGATCATGCCGGCGTCGGCGCTCCACCGCCTCGCCTCCCTCCACATCGACTACCCGATGCTGTTCGAGCTCTCCCACCACGGCGACGCCGCCGCCCACCGGGTCACCCACTGCGGCGTGCTGGAGTTCGTCGCCGACGAGGGCACGGTGATCATGCCGCGGTGGATGATGCGCGGCATGCGCCTCGACGACGGCGGCCTCGTCGTCGTCAGGAGCGCCAGCCTCCCCAAGGGCAGCTACGCCAAGCTGCAGCCTCACACCGGCGACTTCCTCGACACGGCGAACCCCAAGGCCGTCCTGGAGAAGACGCTGCGCAGCTTCACCTGCCTCACCACCGGCGACACCATCATGGTGGCCTACAACAACAAGGAGTTCCTCATCGACATCATCGAGACGAAGCCCGCCTCGGCCGTCTGCATCATCGAGACGGATTGCGAGGTCGATTTCGCACCTCCACTCGATTACAAAGAACCTGAAAAGGTTCAGCAGAAACCATCTGTTCCTTCAAGCAAGGCGGCTTCCGAAGATCAAGATCAAATCAAAGATGAGCCAGAATTCAGAGCATTCACTGGTTCAGGGAATCGTTTGGATGGTAAGGCCTCAAAACCGCTAGCAGCAGGGATCTCTTCTAATCCTGCTGCTGCAAGTTCTGCAATTTCAGACTCGAACAAGAAGGTGAATCAGGAGACAGCAGCATCAGGAGTTAGCAACTCTACACGTCAGAAAAAGGGGAAGCTTGTTTTTGGTTCAAACAAAAGCAGCAGCAGCAGCAAAGAACCAGAGAAGGCTCCTCCTGTTAAAGTTGATGAACTTGCAAAGAAGGAAGAGCCCAAGTTCCAAGCATTTTCTGGGACGAGCTACTCGTTGAAACGTTAG
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| Protein seq | MLSRILHGYGGHGGRGFEQTYRCYSAAAFNKPQLEGGDKVIMPASALHRLASLHIDYPMLFELSHHGDAAAHRVTHCGVLEFVADEGTVIMPRWMMRGMRLDDGGLVVVRSASLPKGSYAKLQPHTGDFLDTANPKAVLEKTLRSFTCLTTGDTIMVAYNNKEFLIDIIETKPASAVCIIETDCEVDFAPPLDYKEPEKVQQKPSVPSSKAASEDQDQIKDEPEFRAFTGSGNRLDGKASKPLAAGISSNPAAASSAISDSNKKVNQETAASGVSNSTRQKKGKLVFGSNKSSSSSKEPEKAPPVKVDELAKKEEPKFQAFSGTSYSLKR |
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| Function | Ubiquitin recognition factor in ER-associated degradation protein 1 [UniProtKB/Swiss-Prot:Q9ES53] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_09G015440 | OsN22_09G015440_01 | Chr09 | 20330973 | 20333303 | - | NAM | ||
| CDS seq | ATGCTTTCCCGGATTCTGCATGGCTATGGAGGACACGGCGGGAGAGGCTTCGAGCAGACGTACCGGTGCTACTCGGCGGCGGCCTTCAACAAGCCGCAGCTCGAAGGCGGAGACAAGGTGATCATGCCGGCGTCGGCGCTCCACCGCCTCGCCTCCCTCCACATCGACTACCCGATGCTGTTCGAGCTCTCCCACCACGGCGACGCCGCCGCCCACCGGGTCACCCACTGCGGCGTGCTGGAGTTCGTCGCCGACGAGGGCACGGTGATCATGCCGCGGTGGATGATGCGCGGCATGCGCCTCGACGACGGCGGCCTCGTCGTCGTCAGGAGCGCCAGCCTCCCCAAGGGCAGCTACGCCAAGCTGCAGCCTCACACCGGCGACTTCCTCGACACGGCGAACCCCAAGGCCGTCCTGGAGAAGACGCTGCGCAGCTTCACCTGCCTCACCACCGGCGACACCATCATGGTGGCCTACAACAACAAGGAGTTCCTCATCGACATCATCGAGACGAAGCCCGCCTCGGCCGTCTGCATCATCGAGACGGATTGCGAGGTCGATTTCGCACCTCCACTCGATTACAAAGAACCTGAAAAGGTTCAGCAGAAACCATCTGTTCCTTCAAGCAAGGCGGCTTCCGAAGATCAAGATCAAATCAAAGATGAGCCAGAATTCAGAGCATTCACTGGTTCAGGGAATCGTTTGGATGGTAAGGCCTCAAAACCGCTAGCAGCAGGGATCTCTTCTAATCCTGCTGCTGCAAGTTCTGCAATTTCAGACTCGAACAAGAAGGTGAATCAGGAGACAGCAGCATCAGGAGTTAGCAACTCTACACGTCAGAAAAAGGGGAAGCTTGTTTTTGGTTCAAACAAAAGCAGCAGCAGCAGCAAAGAACCAGAGAAGGCTCCTCCTGTTAAAGTTGATGAACTTGCAAAGAAGGAAGAGCCCAAGTTCCAAGCATTTTCTGGGACGAGCTACTCGTTGAAACGTTAG
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| Protein seq | MLSRILHGYGGHGGRGFEQTYRCYSAAAFNKPQLEGGDKVIMPASALHRLASLHIDYPMLFELSHHGDAAAHRVTHCGVLEFVADEGTVIMPRWMMRGMRLDDGGLVVVRSASLPKGSYAKLQPHTGDFLDTANPKAVLEKTLRSFTCLTTGDTIMVAYNNKEFLIDIIETKPASAVCIIETDCEVDFAPPLDYKEPEKVQQKPSVPSSKAASEDQDQIKDEPEFRAFTGSGNRLDGKASKPLAAGISSNPAAASSAISDSNKKVNQETAASGVSNSTRQKKGKLVFGSNKSSSSSKEPEKAPPVKVDELAKKEEPKFQAFSGTSYSLKR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.100222 | 0.381564 | 0.304455 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g32020 | RBH | 0.436983 | 0.0 | 0.124578 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0015140 | RBH | 2.453094 | 4.081823 | 2.772770 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0015130 | SBH | 1.226214 | 0.000000 | 1.929138 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0015350 | RBH | 0.601712 | 0.0 | 4.171225 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0015190 | RBH | 1.594265 | 0.084462 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0015280 | RBH | 0.876014 | 0.0 | 0.943108 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0320900 | SBH | 1.432266 | 3.7956585 | 1.9884985 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0015120 | RBH | 2.961598 | 0.000000 | 0.233764 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0310100 | RBH | 1.776915 | 5.0302685 | 3.4662785 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0015090 | RBH | 1.449509 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0014950 | RBH | 4.502866 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0014990 | RBH | 32.727436 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0014860 | RBH | 6.665013 | 0.0 | 2.510763 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0014960 | RBH | 0.105941 | 0.432305 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0015250 | RBH | 0.661360 | 1.842017 | 1.389710 |
