Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsN22_09G006490		OGI:09030450 \| 16/16			N22 \| OsN22RS2 \| Gramene(+IsoSeq)			Chr09:10869040-10872700		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		-
DNA seq		CTACCAGCTCCAGTGCCAGTGGAACCGGCTGCACTGCACATTCAGAGCCAACTAAACTGTAAAAGACGATGCCCTATTAGCGATGTAAAATGCAGACTCTGACTGAAATTTATTTTCTTGGTAAAACTGAAACTGGAACAATTGACACAGGGTGCTGTGGGAAATATGGCTGACTCCTAAGCTGTTCATGGATTGGATAATTTTGTCGTTATACTTGTTCGAGCGGAGCATCCTCTATCCCTATTTTTATCAGTTTATATGCATTGAAAATTTAGGGGGCTGCTATAAAAAAAATCCCATTCAGACGGATGAAACCGGTTACGTATGAGGTCCTAACCGGTATCAGGTGATTTCTATCAGGTTACCTATCAGACGATATGCTACCAGATACCAGGCAATTTCGGTACCAAGAAATCACTTGATATCGATTAGGTATTAGGGGATGATATATTAGAGGTATTAGGATATGTTATTTAATCGGTAAAGTAACCTGAAAATTTATCAGGTATCAGGTATTAGGATCTGATGTACGGGATGCCGTTACGTAGCATTCCTGAAAATTTATTAGAGGTCAAAGTAAAATGGAAATCATGAACGTGTTCAGGTGAAAGTCAGGAATTTTACATTTGCGGATGGATGAGCCTGATGGAATGGATGAGAAAGTGCAATTTGTTTTTGGGTGAATAGCTAATTTAGTCCTTCAAGTTTCAACGAAGGCTTAATTTAGTCCATCACGTTTCATTTTATCCACATAGCTCCTCTAAATATTTGTTTTAGCTTGAAATCATTCTTGGGCCCACTTAATATGCCATATGGCTATTTCTAGTCAATATTTCTATTAGAAAATGCCCCTTCTGCCCTTAATTTGTATACAACTATATACTAGATAAGAGAAAACCAAGATGAATAAACAACATTGCATATGTACTTCCCATTATTTTAACATGTGCACATAAACTTAAGCAATTGCTATCTCATACACTTTCTAGTACATATTTTATTTTCGTTTTACATAATTTAATATGCATTATCTATAAAAAAATTCAAGCATGCAATTTTTCTCTTATATATGTGAATGATGAGGGGGTATAAGTGTCATTTATCAAGAGAATTGTCGGTTCAAGGATAAGTTTGAACTAAAATGAAAATTTGAAGGATTAATATGGATAGATTGAAACATCAAGGACTAAACCAAGCCTTAGGTGAAACTTGGAGGACTACTTTGGCTATTCACCCTTTGTTTTTCATCTTGTGAAATACCAATAGCACAACATTTTTTCAGACAACATGTACAACTGCCCTGTCAGATCGTGTTTACGACGACATAGACGGTAAGGAAAAACGCCACAGCATTCAAGAACCAGAACAAGTACAGAACTAACAGGTAAACCCCCACCGACCGGAAACGCCGCCCGATGCGCCGACGCGTCCACCCACTGTCTTCTCCGGCGAGGGCACGAGGCAACAGAAGCAGTGTGGTGAAGGTCGGCGCTGGCACGGCCCAGACGAAGCTGAGCGCGACCAAGAAGGCGAACGGCAGCACGAAGATGCTCCACAGGATGTACTTGGTGGTCGTGCTGTCCAGCCCGGAGACGACGGCGGCCATGAACGCCAGGATCATGCTCATCAGCGCCATCCAGAGGAAGATGAGGGACATGCATATCCACGCCGTGCTTGAGCGTGCCGCCCCCCTGCCGTAGGTGAGGAGCATGGTGGCGATCACGGAGGACGCCATGGCCACGGTGTCGAGCACCAGGAAGGCGTTGTAAGGCGTCGTCGCGCGGAGGTTCGCCACGCCGTCGGAGTTGTACCCTCCTGGCACGTTGAACATGGCGGTCAGGGCGATGGTGGCGATCAGCACGGCGACGATGCCAAGGTTCTTGGTCGTTTTCTCGTTCCATTCCTTAACATTTTTGCTGCTCCATTGGGATATGCAATCTTGTCGTTGCGCCCCGAACCGAGCTCCATTGGCTGACAGTCTGAGCAAAAAACCAATCTGACAGTGAAAAGAAACCAATTTTTAGTTCGATGCAATCATGAACAAAGCTAGCTACGACTAGTTTCGAATCGAGAGTACTACCATGTGCAAGAAACCGGTTGTGTTTGATGCGAGGTCGAATGGTGTTTGCCCTTCGTTGTTAACAATGTTCAGTTTGATGTTTCTGCTCTCCAAAATTGCGAGACGCGGGTTCCCGGCCTTCACCGCGTAGTGCATGGGTGTGTTCCCTTTCTTGTCTTGCTCATTGAAAAGCTCAGCAAGAGATGGATCGCCAAGGATGTATGACACTACAGGTTCATGGCCTCTCTCGATGGCCAGATGGAGAATGTTTCTGCCCTCGTTGTCGACAAGCTCGGCAGAGTCTGGGCATTCTTTCAGCATGTCTTGGATGACATCAAGATGACCCATCTTCGCTGCGACATGAAGAGGTGTCAATCCTTCTTTGTCTGGGATGTACATAGCCGATGGCATCGACTGAATCAACATGCTGATGATCTCTCGGACGCCATCAGACGCCGCATAGTGCAGCGGAGTGCTTTCCGATTCATCGGGTTCCTTGGCCAGATTCGAGTTCCATGACAATAACTCGCGTGTGATTTCTACATAAGACTGAAAATTAGCTCTGCAACAACATTTTCTTGGAAAAAGTTTCGTGTCTCTGAATTCTGAATAGCTGAAGAACTAAGTGAAGTTTTCAGTAGGTCAACGGCTCACCTACGCTCTGAAGAACAGCTACGTGCAAAGCGTTCTGCCTCTTGGGGCCAGACGCAGACGCGTGCTTCCACTGGATGATGGCTTTCACGGCGCCGATCGACCGCCCGACGACGGCGAGGTACAGCGGCGATATTCCGAAGTTGTTCACACCGCAAGACAAGGCCGGAGCGGCCACCATCAGGACCTTCACCACCGCCACGCGCCCGTGCCGTGCCGCCACGTGCAACGCCGTGTCGCCCGCGCTGTTCTTCGTCACCAGTAGCCCGGGAGCGCCGGATCCATGCATCTGAGCTAGCCTGATGAGAAGGGACACCATGTCGCGCCTCCCCGCCCTCGCGGCGTGGTGCAACGCCGTCTCCGACTTGGTGGTCTCTTTCGGCAGCAGCGCCACCACCGCCGCCGCGGCCGTGTCGTCGCCATCGCAGAGCTTCCTCACAAGCCCAATCTTCCCTTGACCGGCCGCTAAGTGAAGAACGGTGTTCAGCCCTGCGGTGGTCTCGTCCAGGACGCACTGGCCGTCATGCCTTCTTCCTTGTTCCTCTGTCAATAAAATAGTCAAATTAATGTAGACGATTAATTTCAGATTCGTAGATTGCACTCTGCAAATTGGGATGCAAATCGATACATGAATGTACCTGCTGCCGTTCCACTGGGTGAAACAAGAAGTTCCTGGAGCTTGTCTACAGATCCAGAGAAGGCGGCGCGATACAGCTCTGGGCACATCAACCTGCGTCCCGCATTCTGCTGCTCCGGCTGGGTGGCTGCTGCTCCGGCATGGACGGGGTCTTCTACGGGAAGTTGCAGCAGAGGGAGTTGGAACGCCGTGTCAGCCGGTGAGTCCCTCGCACGACGTAACGCGGCTCTCAGATCATCGTCGCCGAGCTCGTCGGCCTTTCTCAAAGCTTGCTCGATTTGCCCGGCAAATTGAACACCAGCAACATGATCCAT More
CDS seq		ATGGATCATGTTGCTGGTGTTCAATTTGCCGGGCAAATCGAGCAAGCTTTGAGAAAGGCCGACGAGCTCGGCGACGATGATCTGAGAGCCGCGTTACGTCGTGCGAGGGACTCACCGGCTGACACGGCGTTCCAACTCCCTCTGCTGCAACTTCCCGTAGAAGACCCCGTCCATGCCGGAGCAGCAGCCACCCAGCCGGAGCAGCAGAATGCGGGACGCAGGTTGATGTGCCCAGAGCTGTATCGCGCCGCCTTCTCTGGATCTGTAGACAAGCTCCAGGAACTTCTTGTTTCACCCAGTGGAACGGCAGCAGAGGAACAAGGAAGAAGGCATGACGGCCAGTGCGTCCTGGACGAGACCACCGCAGGGCTGAACACCGTTCTTCACTTAGCGGCCGGTCAAGGGAAGATTGGGCTTGTGAGGAAGCTCTGCGATGGCGACGACACGGCCGCGGCGGCGGTGGTGGCGCTGCTGCCGAAAGAGACCACCAAGTCGGAGACGGCGTTGCACCACGCCGCGAGGGCGGGGAGGCGCGACATGGTGTCCCTTCTCATCAGGCTAGCTCAGATGCATGGATCCGGCGCTCCCGGGCTACTGGTGACGAAGAACAGCGCGGGCGACACGGCGTTGCACGTGGCGGCACGGCACGGGCGCGTGGCGGTGGTGAAGGTCCTGATGGTGGCCGCTCCGGCCTTGTCTTGCGGTGTGAACAACTTCGGAATATCGCCGCTGTACCTCGCCGTCGTCGGGCGGTCGATCGGCGCCGTGAAAGCCATCATCCAGTGGAAGCACGCGTCTGCGTCTGGCCCCAAGAGGCAGAACGCTTTGCACGTAGCTGTTCTTCAGAGCGTAGAAATCACACGCGAGTTATTGTCATGGAACTCGAATCTGGCCAAGGAACCCGATGAATCGGAAAGCACTCCGCTGCACTATGCGGCGTCTGATGGCGTCCGAGAGATCATCAGCATGTTGATTCAGTCGATGCCATCGGCTATGTACATCCCAGACAAAGAAGGATTGACACCTCTTCATGTCGCAGCGAAGATGGGTCATCTTGATGTCATCCAAGACATGCTGAAAGAATGCCCAGACTCTGCCGAGCTTGTCGACAACGAGGGCAGAAACATTCTCCATCTGGCCATCGAGAGAGGCCATGAACCTGTAGTGTCATACATCCTTGGCGATCCATCTCTTGCTGAGCTTTTCAATGAGCAAGACAAGAAAGGGAACACACCCATGCACTACGCGGTGAAGGCCGGGAACCCGCGTCTCGCAATTTTGGAGAGCAGAAACATCAAACTGAACATTGTTAACAACGAAGGGCAAACACCATTCGACCTCGCATCAAACACAACCGGTTTCTTGCACATGATTGGTTTTTTGCTCAGACTGTCAGCCAATGGAGCTCGGTTCGGGGCGCAACGACAAGATTGCATATCCCAATGGAGCAGCAAAAATGTTAAGGAATGGAACGAGAAAACGACCAAGAACCTTGGCATCGTCGCCGTGCTGATCGCCACCATCGCCCTGACCGCCATGTTCAACGTGCCAGGAGGGTACAACTCCGACGGCGTGGCGAACCTCCGCGCGACGACGCCTTACAACGCCTTCCTGGTGCTCGACACCGTGGCCATGGCGTCCTCCGTGATCGCCACCATGCTCCTCACCTACGGCAGGGGGGCGGCACGCTCAAGCACGGCGTGGATATGCATGTCCCTCATCTTCCTCTGGATGGCGCTGATGAGCATGATCCTGGCGTTCATGGCCGCCGTCGTCTCCGGGCTGGACAGCACGACCACCAAGTACATCCTGTGGAGCATCTTCGTGCTGCCGTTCGCCTTCTTGGTCGCGCTCAGCTTCGTCTGGGCCGTGCCAGCGCCGACCTTCACCACACTGCTTCTGTTGCCTCGTGCCCTCGCCGGAGAAGACAGTGGGTGGACGCGTCGGCGCATCGGGCGGCGTTTCCGGTCGGTGGGGGTTTACCTGTTAGTTCTGTACTTGTTCTGGTTCTTGAATGCTGTGGCGTTTTTCCTTACCTGCAGCCGGTTCCACTGGCACTGGAGCTGGTAG More
Protein seq		MDHVAGVQFAGQIEQALRKADELGDDDLRAALRRARDSPADTAFQLPLLQLPVEDPVHAGAAATQPEQQNAGRRLMCPELYRAAFSGSVDKLQELLVSPSGTAAEEQGRRHDGQCVLDETTAGLNTVLHLAAGQGKIGLVRKLCDGDDTAAAAVVALLPKETTKSETALHHAARAGRRDMVSLLIRLAQMHGSGAPGLLVTKNSAGDTALHVAARHGRVAVVKVLMVAAPALSCGVNNFGISPLYLAVVGRSIGAVKAIIQWKHASASGPKRQNALHVAVLQSVEITRELLSWNSNLAKEPDESESTPLHYAASDGVREIISMLIQSMPSAMYIPDKEGLTPLHVAAKMGHLDVIQDMLKECPDSAELVDNEGRNILHLAIERGHEPVVSYILGDPSLAELFNEQDKKGNTPMHYAVKAGNPRLAILESRNIKLNIVNNEGQTPFDLASNTTGFLHMIGFLLRLSANGARFGAQRQDCISQWSSKNVKEWNEKTTKNLGIVAVLIATIALTAMFNVPGGYNSDGVANLRATTPYNAFLVLDTVAMASSVIATMLLTYGRGAARSSTAWICMSLIFLWMALMSMILAFMAAVVSGLDSTTTKYILWSIFVLPFAFLVALSFVWAVPAPTFTTLLLLPRALAGEDSGWTRRRIGRRFRSVGVYLLVLYLFWFLNAVAFFLTCSRFHWHWSW
Function		Ankyrin repeat-containing protein At5g02620 [UniProtKB/Swiss-Prot:Q6AWW5]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsN22_09G006490	OsN22_09G006490_01	Chr09	10869040	10872700	-	NAM
CDS seq	ATGGATCATGTTGCTGGTGTTCAATTTGCCGGGCAAATCGAGCAAGCTTTGAGAAAGGCCGACGAGCTCGGCGACGATGATCTGAGAGCCGCGTTACGTCGTGCGAGGGACTCACCGGCTGACACGGCGTTCCAACTCCCTCTGCTGCAACTTCCCGTAGAAGACCCCGTCCATGCCGGAGCAGCAGCCACCCAGCCGGAGCAGCAGAATGCGGGACGCAGGTTGATGTGCCCAGAGCTGTATCGCGCCGCCTTCTCTGGATCTGTAGACAAGCTCCAGGAACTTCTTGTTTCACCCAGTGGAACGGCAGCAGAGGAACAAGGAAGAAGGCATGACGGCCAGTGCGTCCTGGACGAGACCACCGCAGGGCTGAACACCGTTCTTCACTTAGCGGCCGGTCAAGGGAAGATTGGGCTTGTGAGGAAGCTCTGCGATGGCGACGACACGGCCGCGGCGGCGGTGGTGGCGCTGCTGCCGAAAGAGACCACCAAGTCGGAGACGGCGTTGCACCACGCCGCGAGGGCGGGGAGGCGCGACATGGTGTCCCTTCTCATCAGGCTAGCTCAGATGCATGGATCCGGCGCTCCCGGGCTACTGGTGACGAAGAACAGCGCGGGCGACACGGCGTTGCACGTGGCGGCACGGCACGGGCGCGTGGCGGTGGTGAAGGTCCTGATGGTGGCCGCTCCGGCCTTGTCTTGCGGTGTGAACAACTTCGGAATATCGCCGCTGTACCTCGCCGTCGTCGGGCGGTCGATCGGCGCCGTGAAAGCCATCATCCAGTGGAAGCACGCGTCTGCGTCTGGCCCCAAGAGGCAGAACGCTTTGCACGTAGCTGTTCTTCAGAGCGTAGAAATCACACGCGAGTTATTGTCATGGAACTCGAATCTGGCCAAGGAACCCGATGAATCGGAAAGCACTCCGCTGCACTATGCGGCGTCTGATGGCGTCCGAGAGATCATCAGCATGTTGATTCAGTCGATGCCATCGGCTATGTACATCCCAGACAAAGAAGGATTGACACCTCTTCATGTCGCAGCGAAGATGGGTCATCTTGATGTCATCCAAGACATGCTGAAAGAATGCCCAGACTCTGCCGAGCTTGTCGACAACGAGGGCAGAAACATTCTCCATCTGGCCATCGAGAGAGGCCATGAACCTGTAGTGTCATACATCCTTGGCGATCCATCTCTTGCTGAGCTTTTCAATGAGCAAGACAAGAAAGGGAACACACCCATGCACTACGCGGTGAAGGCCGGGAACCCGCGTCTCGCAATTTTGGAGAGCAGAAACATCAAACTGAACATTGTTAACAACGAAGGGCAAACACCATTCGACCTCGCATCAAACACAACCGGTTTCTTGCACATGATTGGTTTTTTGCTCAGACTGTCAGCCAATGGAGCTCGGTTCGGGGCGCAACGACAAGATTGCATATCCCAATGGAGCAGCAAAAATGTTAAGGAATGGAACGAGAAAACGACCAAGAACCTTGGCATCGTCGCCGTGCTGATCGCCACCATCGCCCTGACCGCCATGTTCAACGTGCCAGGAGGGTACAACTCCGACGGCGTGGCGAACCTCCGCGCGACGACGCCTTACAACGCCTTCCTGGTGCTCGACACCGTGGCCATGGCGTCCTCCGTGATCGCCACCATGCTCCTCACCTACGGCAGGGGGGCGGCACGCTCAAGCACGGCGTGGATATGCATGTCCCTCATCTTCCTCTGGATGGCGCTGATGAGCATGATCCTGGCGTTCATGGCCGCCGTCGTCTCCGGGCTGGACAGCACGACCACCAAGTACATCCTGTGGAGCATCTTCGTGCTGCCGTTCGCCTTCTTGGTCGCGCTCAGCTTCGTCTGGGCCGTGCCAGCGCCGACCTTCACCACACTGCTTCTGTTGCCTCGTGCCCTCGCCGGAGAAGACAGTGGGTGGACGCGTCGGCGCATCGGGCGGCGTTTCCGGTCGGTGGGGGTTTACCTGTTAGTTCTGTACTTGTTCTGGTTCTTGAATGCTGTGGCGTTTTTCCTTACCTGCAGCCGGTTCCACTGGCACTGGAGCTGGTAG More
Protein seq	MDHVAGVQFAGQIEQALRKADELGDDDLRAALRRARDSPADTAFQLPLLQLPVEDPVHAGAAATQPEQQNAGRRLMCPELYRAAFSGSVDKLQELLVSPSGTAAEEQGRRHDGQCVLDETTAGLNTVLHLAAGQGKIGLVRKLCDGDDTAAAAVVALLPKETTKSETALHHAARAGRRDMVSLLIRLAQMHGSGAPGLLVTKNSAGDTALHVAARHGRVAVVKVLMVAAPALSCGVNNFGISPLYLAVVGRSIGAVKAIIQWKHASASGPKRQNALHVAVLQSVEITRELLSWNSNLAKEPDESESTPLHYAASDGVREIISMLIQSMPSAMYIPDKEGLTPLHVAAKMGHLDVIQDMLKECPDSAELVDNEGRNILHLAIERGHEPVVSYILGDPSLAELFNEQDKKGNTPMHYAVKAGNPRLAILESRNIKLNIVNNEGQTPFDLASNTTGFLHMIGFLLRLSANGARFGAQRQDCISQWSSKNVKEWNEKTTKNLGIVAVLIATIALTAMFNVPGGYNSDGVANLRATTPYNAFLVLDTVAMASSVIATMLLTYGRGAARSSTAWICMSLIFLWMALMSMILAFMAAVVSGLDSTTTKYILWSIFVLPFAFLVALSFVWAVPAPTFTTLLLLPRALAGEDSGWTRRRIGRRFRSVGVYLLVLYLFWFLNAVAFFLTCSRFHWHWSW More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.0	0.0	0.000000

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_09g0334900	RBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os09g16550	RBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| RAP-db	Os09g0334900	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_09g0006130	RBH	0.0	0.0	0.0
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_09g0006150	RBH	0.0	1.399602	0.0
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_09g0006390	RBH	0.0	0.0	0.0
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_09g0006230	RBH	0.0	0.028579	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_09g0006350	RBH	0.0	0.0	0.0
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_09G0180000	RBH	0	0.00995	0
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_09g0006490	RBH	0.0	0.0	0.0
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_09G0155000	RBH	0	0	0.01644
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_09g0006300	RBH	0.0	0.0	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_09g0006140	RBH	0.0	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_09g0006160	RBH	0.0	0.0	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_09g0006070	RBH	0.0	0.0	0.0
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_09g0006130	RBH	0.0	0.000000	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_09G006320	SBH	0.0	0.0	0.0
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_09g0006340	RBH	0.0	0.0	0.0

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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