Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_08G013290 | OGI:04027680 | 2/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr08:17727337-17730153 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCACACCGCCCCATCTATGCTTGAAGTTGGAACCACTACACCAATCAGGCATCCTTGAAAAAAAACACATAGAACACAAAAAAGTCTGAGACAAAAATACAACATGTGCTCTGCAACAAAAAAAAAAGTGTATACTACTATGTAAGACAAACCAGGGAATACTATGAAACATAATATTAATGTGTACTACAACATTGTATATGCATGGATGGGAACACAAAAAAGGGAAAAAAATAAAAAAATGCATAATAGATTATCACAGTACAAAAATGGTAAAACAAAAAAACCACCATATGAAAACAATCACAGTGCAAACTATATATTATAGATTATCAAATATATCTCATAATAGATCATCATAGATTATCCTTGTGTGACAAATTAATATAACTACTAGAGTACAATCACATCTAGGAGGCCACATGCAACACGGACAATAAAAAAAATCCTTTCACATCTAGGGGGATCTCATAAATGCATCCTCATAAATTATACCTAAAAACATTCTGAAAAAAAATTAATGTCATTACTAGAACACATTCACATCTAGTAGACCACATGCAAAACACAAAAAAAAACTTTTCGGATTTGGGGGAGAAAAAGCATGGGGTAGCAAGAGGTTGGGTGTGGAGTGGGGAAAGGGGGTAAACGAAGGGCTCACCTCGACGCCGGGAATGGAGCTAGAAGCCGCCGCCGGGGATGGAGATAGCCGCCGTCGCTGCTGGTCGGAACCGCGGCAACACGCAGCCGCAGGGTGAGAGTGTGGTGGGGGTAGAGCCGTAGAGGGGAATGCGACGATTGGAGAAGCCGCTGCGACAGCTTCTAGTGCTGAGTCAGTGTTGCCATCCTGTTACAGTGTGGAGGCATTTTCAAAAGCATATGGGTTCAACATTTGACCATGCAGTGACATTTCTAAATGGGAGAAGACAAATGGGCCAGAAGTGAGGCCTCCAGTATATGAAAAGAAAGTGGGCACGCCACCTAAGTCCAGGAGGAAAGCACCACATGAAGTCCAGGGGAAGCATGGGCTAAAAATGTCCAAGCATGGTGTTGAGATGCATTGCAAGTATTGCAATGAGCCTGGCCACAACCAAAGGGGCTGCAAGCTCAAAAAAACTGGACTGAGGCCCACACAACAGCCACAGAGGGCTGCCACTACTACTGTTGAGGAATCTGATCCAATCAGCCCAGAGGTAATGCAATTTCAAATTTTAAACTGTTATGACTAACTGTCACCCTAGAGGTTTGATTTGCAACTGTCATGATATGGTTTTGTTTTGTAGGCTCAATCTCAACCTCATTTTCCTACCCATGACCAACTGTTGACACAAATACCTAATGCAATGGTATCACAGATGTTTGATGAGTCATCTCAAGTTTCTCAAATGAACCTAGCACCTGGGCCTTTACCTGACAATCAATTTGTCATGACTAACACTCCAACTGTCAGGCCAACCCTTCTCACCACTGCAACAAAGGCAGGAAAAGCAAGAGCAACCAAAAGAAAGGCTGCAGTTGTTGCTCCAGCAAAGAAAGCTACTAAGAAGAGGTAGAAGGATTGTGCTGATGGTGCAAAGAAATAACTTAGGATTAGGAACAGATTAAGAAGCAACTGAATGCTAGAAGTTAAGCATGCTTGTCCTTTTGTAATGCCAAACTAATGGCCTACCTTTATTCTTTTGTAGCTGCCAACCTAATGGCCTACCTTACCTTCTTTTGTAATGCCAAACTATGGCTCACTGCTATGCAAAACTGATGGATGTTGGGCTGCCATTTACTCTAGACTTTATGTCATGAAATATTTGGCATCTACTGTGCACAACTGATGGATGCTATGCAAAACTGATGGCTCACTGCTATGCAAAACTGATGGATATGCTATGCAAAACTGCTATGCAAAATTGTTTGCATCTACTGTCAGTCTGTAAATATTTTCATTTTGTTTGCATCTCCATAATCAATTTCAGATGACAAATGTACTGAAGACTGCAAACCTGACATTACCATTTCAAAAGTTTCACATCTCATTGCACATTGCAAACCAACACAGTATGGTTTAGCCTGAATACAACCCAAAATTCACTGATACAATGGGCACACATCACTTAAACCATAAAACAAGGAAACAACACACTATCAAACCAACTGAACACACACCACCAACTAGCATGAGCTTCATCATCACCATCATCTCCCTCAAAATGAGCAACATATGATCAGCCTGCTTAAATTATTCAACATCTGCATCTTTTCTAATCTCTTGAACCGTGCTCTTCTTCTTCACATCTGCATCCAGCTTGATTTCTTCAGTTCCCCTCTGCATTTCCCTCTGGTTTGCTTCATTCAGCAACTTTGCACAAGTGTTTTGCTCAATCAAGCCTTTCCTATTCAGGTATTTAATATACCCTTCCTCCCAATACCAAAAATCGCAACCACTTCCACCCTTCTGTACATTTTAGAACAAGCAAAGATTTCAGAAGATTTACCCCCAAAAACAGTAATACCCCCACAATAAAAAATTAACCTCAATCGATTTACCTCGTGTGAAGGGCATGTGAAGAATATGCGGCCTTGATTAGCTTCCGTGTTAGCAGTAAGCTCCACGATTTGCTTCACCCCGCATCAAGGGCACAAGATAAGTGGGATTGAGGTCCTCCTCCGACGACGACTTGAACACAAAGAACAGCTTGCTAAGGCCATGGCTCATCAAGACTCGTTGCACCGCCCTCAACTGTCGGCCACTGCTGCTCGCACCGCCGTCGCCTCTCCGCCGCCACTAACTATCCATGCTACGAACAGAGTGAGGCTAGGGTTTGT
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| CDS seq | ATGCAGAGGGGAACTGAAGAAATCAAGCTGGATGCAGATGTGAAGAAGAAGAGCACGGTTCAAGAGATTAGAAAAGATGCAGATGCTGATCATATGTTGCTCATTTTGAGGGAGATGATGGTGATGATGAAGCTCATGCTAGTTGGTGGTGTGTGTTCAGTTGGTTTGATAGCTAAACCATACTGTGTTGGTTTGCAATGTGCAATGAGATGTGAAACTTTTGAAATGGTAATGTCAGGATGCCTGATTGGTGTAGTGGTTCCAACTTCAAGCATAGATGGGGCGGTGTGA |
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| Protein seq | MQRGTEEIKLDADVKKKSTVQEIRKDADADHMLLILREMMVMMKLMLVGGVCSVGLIAKPYCVGLQCAMRCETFEMVMSGCLIGVVVPTSSIDGAV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_08G013290 | OsN22_08G013290_01 | Chr08 | 17727337 | 17729659 | - | NAM | ||
| CDS seq | ATGCAGAGGGGAACTGAAGAAATCAAGCTGGATGCAGATGTGAAGAAGAAGAGCACGGTTCAAGAGATTAGAAAAGATGCAGATGCTGATCATATGTTGCTCATTTTGAGGGAGATGATGGTGATGATGAAGCTCATGCTAGTTGGTGGTGTGTGTTCAGTTGGTTTGATAGCTAAACCATACTGTGTTGGTTTGCAATGTGCAATGAGATGTGAAACTTTTGAAATGGTAATGTCAGGATGCCTGATTGGTGTAGTGGTTCCAACTTCAAGCATAGATGGGGCGGTGTGA
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| Protein seq | MQRGTEEIKLDADVKKKSTVQEIRKDADADHMLLILREMMVMMKLMLVGGVCSVGLIAKPYCVGLQCAMRCETFEMVMSGCLIGVVVPTSSIDGAV |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_08G013290 | OsN22_08G013290_02 | Chr08 | 17729315 | 17730153 | - | IsoSeq | ||
| CDS seq | ATGCAGAGGGGAACTGAAGAAATCAAGCTGGATGCAGATGTGAAGAAGAAGAGCACGGTTCAAGAGATTAGAAAAGATGCAGATGTT |
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| Protein seq | MQRGTEEIKLDADVKKKSTVQEIRKDADV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.419769 | 0.000000 | 0.473451 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g27759 | SBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0013590 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0013170 | RBH | 0.0 | 1.044829 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0013860 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
