Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_07G009720 | OGI:07015200 | 16/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr07:9608711-9610263 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TATAAAAGGATATACATTTTTCATGCCATCTACAATTAACCCCAATACAAAGAACAGAAAAGTGTTCAAGGAAGCAATAGATAAACAGATTAAATCCATCATAGTGAATTTCATGTTCAAGACATTAAGAAAACCACATCAATCCAGATAACTAATCTACAAGATACTTAGAAAATGTTTAAAGGGTACGTTCTGCCCACTAATATTTATTCTAAGCCTACATCTCCTTGGTTGTTGAACGGCTATCTAAAGTGTCACTAGGGCAACCAGCCTCGATGAAACCCACTAGCCCAGTAGGAGCTTTTGAAATGTTGTATGCGCCATCTGACGAGATGATATGATTGAAGATGAATCCACAGAGTTGTTCAGCGAGGCCGAAACAAGCATGTGGCAACAATTTACTTGTCGGGAGCTTTAATTTCTGCAAATGGAAGAATTGAAGATATGAAAATGTACTGTGTTTAGAAAGTTGGATTTACGTCTTAGAGCATGGCGAACCTTGGCATCCATAATGTTCCAGTTGTTGTCCTCCATGAAAATCGACATAAATCTCATCAGGTAGAACCCACATGTACTCGTGCCCGGATCCTGGCGTAAGCAATAAGGGTGGGCCCAAACCCGGAATGTATTTGCACGCGGAGCGTGTCGAATACACTTCTTCTTATACCTCACAAGTGCCTTATTGAGGGTGTCAATGACAGATTGGAACTTGGCTTGTGGGGTCCTCAGTCCATCGAAGACAACAATCTTGGAATCGTTTAAATGGATCACAAGAAGGATCCAGTGAGGCCTACATAAAAGGAGAGCAATTAACATCTTAAAGTACAAATGGGAAGTACAACGATATATGCCACACTTACTTAAAGTGGTAGGGCAAAAGGATGGTATTCTTGTCGTGCAGGTTGACAAAGGATGCATACACATAGTCGACCACTGCTTGTTCAGACTTATCGCCTAACTGGTCAATATTTCTGGAATTGATTATTTGTGGATCGAGGAATCCTAGTTTGCCATGTGTCGTTCTACATTCAAGTGCCGCCATTCTGCATAAGGAAAAAAATTAGACATGCAACGAGGATATCTACTTAGAAAAAATAGCGAGGGATCGAGTATACTTACAATGTCCATAATTGAATTAGCGATAAGTCTAGCTCCATCAGATTGTATAGTTGAAATAGTTCTTTAAATGGGACCCAAAATATACCATCACAGTGATGAAAGTCCTCGTCCCTGTAAAAGACGGGGAACATCTCCTTACCCTCCTTAGCCATCTGTAAGTACCACTCTTCTACCCTCCTCATCTGAGTACAATTGCCAACGATGTTGCGATATTCATCGGTAGTCAAAGAATGACCGAGTTTGTACTGAGCTGCCAATGGGGCATTCGCAATATTGCGTACATCAAATAAACTGTTCAGCCTTGCACCTTCTAGAAAATCTTGCATAGTCTTGCTGGTCTCAAATTCTTCCTTGGAAAATTCTTGCAATTTCTTTTTCCTGATTGTGCGTCGGAAGTTCGAAATAGGTACTAGTGGGGCAGGTGGTCTTGCCAT
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| CDS seq | ATGGCAAGACCACCTGCCCCACTAGTACCTATTTCGAACTTCCGACGCACAATCAGGAAAAAGAAATTGCAAGAATTTTCCAAGGAAGAATTTGAGACCAGCAAGACTATGCAAGATTTTCTAGAAGGTGCAAGGCTGAACAGTTTATTTGATGTACGCAATATTGCGAATGCCCCATTGGCAGCTCAGTACAAACTCGGTCATTCTTTGACTACCGATGAATATCGCAACATCGTTGGCAATTGTACTCAGATGAGGAGGGTAGAAGAGTGGTACTTACAGATGGCTAAGGAGGGTAAGGAGATGTTCCCCGTCTTTTACAGGGACGAGGACTTTCATCACTGTGATGGTATATTTTGGGTCCCATTTAAAGAACTATTTCAACTATACAATCTGATGGAGCTAGACTTATCGCTAATTCAATTATGGACATTAATGGCGGCACTTGAATGTAGAACGACACATGGCAAACTAGGATTCCTCGATCCACAAATAATCAATTCCAGAAATATTGACCAGTTAGGCGATAAGTCTGAACAAGCAGTGGTCGACTATGTGCCTCACTGGATCCTTCTTGTGATCCATTTAAACGATTCCAAGATTGTTGTCTTCGATGGACTGAGGACCCCACAAGCCAAGTTCCAATCTGTCATTGACACCCTCAATAAGGCACTTGTGAGGTATAAGAAGAAGTGTATTCGACACGCTCCGCGTGCAAATACATTCCGGGTTTGGGCCCACCCTTATTGCTTACGCCAGGATCCGGGCACGAGTACATGTGGGTTCTACCTGATGAGATTTATGTCGATTTTCATGGAGGACAACAACTGGAACATTATGGATGCCAAGAAATTAAAGCTCCCGACAAGTAAATTGTTGCCACATGCTTGTTTCGGCCTCGCTGAACAACTCTGTGGATTCATCTTCAATCATATCATCTCGTCAGATGGCGCATACAACATTTCAAAAGCTCCTACTGGGCTAGTGGGTTTCATCGAGGCTGGTTGCCCTAGTGACACTTTAGATAGCCGTTCAACAACCAAGGAGATGTAG
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| Protein seq | MARPPAPLVPISNFRRTIRKKKLQEFSKEEFETSKTMQDFLEGARLNSLFDVRNIANAPLAAQYKLGHSLTTDEYRNIVGNCTQMRRVEEWYLQMAKEGKEMFPVFYRDEDFHHCDGIFWVPFKELFQLYNLMELDLSLIQLWTLMAALECRTTHGKLGFLDPQIINSRNIDQLGDKSEQAVVDYVPHWILLVIHLNDSKIVVFDGLRTPQAKFQSVIDTLNKALVRYKKKCIRHAPRANTFRVWAHPYCLRQDPGTSTCGFYLMRFMSIFMEDNNWNIMDAKKLKLPTSKLLPHACFGLAEQLCGFIFNHIISSDGAYNISKAPTGLVGFIEAGCPSDTLDSRSTTKEM |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_07G009720 | OsN22_07G009720_01 | Chr07 | 9608711 | 9610263 | - | NAM | ||
| CDS seq | ATGGCAAGACCACCTGCCCCACTAGTACCTATTTCGAACTTCCGACGCACAATCAGGAAAAAGAAATTGCAAGAATTTTCCAAGGAAGAATTTGAGACCAGCAAGACTATGCAAGATTTTCTAGAAGGTGCAAGGCTGAACAGTTTATTTGATGTACGCAATATTGCGAATGCCCCATTGGCAGCTCAGTACAAACTCGGTCATTCTTTGACTACCGATGAATATCGCAACATCGTTGGCAATTGTACTCAGATGAGGAGGGTAGAAGAGTGGTACTTACAGATGGCTAAGGAGGGTAAGGAGATGTTCCCCGTCTTTTACAGGGACGAGGACTTTCATCACTGTGATGGTATATTTTGGGTCCCATTTAAAGAACTATTTCAACTATACAATCTGATGGAGCTAGACTTATCGCTAATTCAATTATGGACATTAATGGCGGCACTTGAATGTAGAACGACACATGGCAAACTAGGATTCCTCGATCCACAAATAATCAATTCCAGAAATATTGACCAGTTAGGCGATAAGTCTGAACAAGCAGTGGTCGACTATGTGCCTCACTGGATCCTTCTTGTGATCCATTTAAACGATTCCAAGATTGTTGTCTTCGATGGACTGAGGACCCCACAAGCCAAGTTCCAATCTGTCATTGACACCCTCAATAAGGCACTTGTGAGGTATAAGAAGAAGTGTATTCGACACGCTCCGCGTGCAAATACATTCCGGGTTTGGGCCCACCCTTATTGCTTACGCCAGGATCCGGGCACGAGTACATGTGGGTTCTACCTGATGAGATTTATGTCGATTTTCATGGAGGACAACAACTGGAACATTATGGATGCCAAGAAATTAAAGCTCCCGACAAGTAAATTGTTGCCACATGCTTGTTTCGGCCTCGCTGAACAACTCTGTGGATTCATCTTCAATCATATCATCTCGTCAGATGGCGCATACAACATTTCAAAAGCTCCTACTGGGCTAGTGGGTTTCATCGAGGCTGGTTGCCCTAGTGACACTTTAGATAGCCGTTCAACAACCAAGGAGATGTAG
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| Protein seq | MARPPAPLVPISNFRRTIRKKKLQEFSKEEFETSKTMQDFLEGARLNSLFDVRNIANAPLAAQYKLGHSLTTDEYRNIVGNCTQMRRVEEWYLQMAKEGKEMFPVFYRDEDFHHCDGIFWVPFKELFQLYNLMELDLSLIQLWTLMAALECRTTHGKLGFLDPQIINSRNIDQLGDKSEQAVVDYVPHWILLVIHLNDSKIVVFDGLRTPQAKFQSVIDTLNKALVRYKKKCIRHAPRANTFRVWAHPYCLRQDPGTSTCGFYLMRFMSIFMEDNNWNIMDAKKLKLPTSKLLPHACFGLAEQLCGFIFNHIISSDGAYNISKAPTGLVGFIEAGCPSDTLDSRSTTKEM
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_07G009720 | OsN22_07G009720_02 | Chr07 | 9608795 | 9609940 | - | IsoSeq | ||
| CDS seq | ATGCTTGTTTCGGCCTCGCTGAACAACTCTGTGGATTCATCTTCAATCATATCATCTCGTCAGATGGCGCATACAACATTTCAAAAGCTCCTACTG |
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| Protein seq | MLVSASLNNSVDSSSIISSRQMAHTTFQKLLL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr07 | 9609500 | 9609631 | - | OsN22_07G009720_02 | OsN22_07G009720_01,OsN22_07G009720_02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.403256 | 5.901347 | 4.005539 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0267400 | RBH | 6.492843 | 1.922362 | 7.635505 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g15350 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0267400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0009790 | RBH | 0.256222 | 8.223940 | 4.542645 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0009930 | RBH | 0.036769 | 0.535029 | 2.081076 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0009830 | RBH | 1.336115 | 2.851068 | 7.399927 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0009520 | RBH | 0.395014 | 0.219621 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0009700 | RBH | 4.613838 | 15.642239 | 6.300238 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0203100 | RBH | 0.0045215 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0010160 | RBH | 0.134953 | 0.303253 | 0.727716 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0147600 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0009650 | RBH | 0.091383 | 0.149949 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0009680 | RBH | 0.351306 | 1.855578 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0009650 | RBH | 2.406551 | 5.186172 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0009860 | RBH | 0.474596 | 0.484709 | 0.798801 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0009740 | RBH | 0.252558 | 1.070191 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
