Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_07G005990 | OGI:07014410 | 16/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr07:5120687-5122977 | ||||||||
| Gene Symbol | STR2 | ||||||||||
| DNA seq | AACGCAAAACTCTCCCCGCGCGCCACGGCGCGTCCGAGAATAGCCACAGCCACCCCGCGCGCAACGCCGCAACGCCCGCCCGTCGCGCGCACCAGCGCCGTCGCGCGCGGCGCGCCACCCCAGCCCCCAACACACAAAAGCAACGCCAAGCCTCGCACGCGCGCGAGGCCGACGCAAGGAGGAGAGGCTGCCCCGGGGGGAGAGAGAGATCACCCGCCTCGCCGCCCGCCCGCGCCGCGGCGGATCGATGGAGCTGTTCGAGCGCGCGAGGACGGTGCGGCTGCGCGGCCACCATGACAAGTACCTGTACGCGGAGGAGGACGAGTCGCGCGTCTCCCAGGACCGGAGCGCCTCGTCCCCGAACGCGCGGTGGTCCGTCGAGCCGGTCCCCCACGCCCCCGGCGTCCTCCGCCTCCGCAGCCACTACGGCCGCTACCTCTCCGCCTCCAACGAGCCCTTCCTCCTCGGCGTCACCGGCCGCAAGGTCCTCCAGGCCCTCCCCCACCGCCTCGACTCCTCCGTCGAGTGGGTCCCCGTCCGCGACGGTGCCCACGCCCGCCTCCGCACCCGCTACGGCAACTACCTCCGCGCCAACGGCGGCCTCCCGCCGTGGCGCAACTCCGTCACCCACGACGTCCCCCACCGCCACGCCGGGTGGATCCTCTGGACCGTCGAGGTCGTCGAGGTCCTCCCGGAATCCCTCGTCCCCGCCCCCATCGCCTCCGACGACGACCCCGCCGCGCCGCATTACAAGACACCTTCTCGCGGGCCCTCTCCCGTGCCGACGCCGGCGCTGGCGCCTGCTTCGCCGCCGCGGCACCGTCCGGCGAGCCCACCTTCGTACTTAGCGCGGCCACCGCCGCCGCCACCGGGCTACATCGAGCCACCACAGGGATACATCGAGCCACCTCCACCGGAGCCCACCCTGGCGAGAATTGAGGTCCGTACTTTCCACGCCCGCCATCTGCTCGACGAATTGTACAGCCCAACAGGGATGTTAGATGAAAATGCCAAGTGCTTATTGTTGTTGCGGACGCATTTTGCCATTGCAGTCCACAGAATCCTTCTCGCTGCCGCTGCACAAGGTGGATGGGCGGGCGATCCACTACCACATTGGGGATGACAACGGCGACATCGGCGATGATCAGGAAGGACACTCATTCACGTTCAACGGGACTAGCCTGGAGGAGCTTTTGGAGAGGTTGCAGGAGGAGACGGGGCTCAACGACGTGATTATCTGCTCTCGTAGCCCGATCAATGGGAAGCTCATGCCCCTCCGCTTGCAGCTGCCGCCCAACAACGCCGCCATGCATATCGTGCTCGTGCGTGAGTCATCAAAAGGTGGGCTTTTCTTTTCATCAGTTATTGCTCATACCATTAGATTCACATTTCACACCGGTGGAACATGATATGTTGAATCATGGAATTTAACGATACATACTAAATTTCTATATACCATTAGATTGATACTTGATAGGCCTCCTATAAGCACAATATACCATCCTTTCTTCAGTGTTAGCTGAAGTGCTCAACTGTGTATAAAATGGTGAACTTCAAACATAAAAATAGGTTAATTCAGAATGCTAACATTTTAAGTTGAGTTTTTGGTTATGCAGATATTTGTCGTTATTTAGTCAATGCACACTGAGCCAACATCCCCTAAACATTTGCTAAATCCTGTATAGTAGATGCTAGTTTAAATTCCTTTATTGAAATAGCTGCAACACAATAATATTGTGGCATGCCATGACCTTATCATATTTACTGACCATCAAATATACTTGGCGGAAAATGGAAGCTAAAATGCATATTGATAAGATATCGATTTTGTGTAAAGTTAAAATTTTCAAGTTAGGACGTTTTAGTGACTAACACTACGATTTTGTTCTTATTTCTTACTCTGATAGAAATGTTTTATCTTTCAGTGGCAAAATCATTTCCATGACCATGTGGTAAAATTTGAAGAGGGTGGTGTCAGCGACTCAAATCAAGCAAGAACTGTGCATCTGTTGTATATATTGTAATCCCTGTTTATTATCAGTTCCACTGGCTACCATAATCAAGTATTATTCTTCCATCTTCAGGAGATCTCATTCTTGTAAGTATTTGCTTCTGTCAACTTTTTTATCATTTATTCAACAGGTAGAGTGATCTCTGGTAGCTAAAGACCCTTCAAAATGCCTATCCTGTCATTCCTCAGTTCTATAGAATAAACTATTCTCTAGGAAATCCACTTGTTCTCCTTTTCCATTTTGATTTTAATACATAAAATCAGAATGTCATTGTTAATT
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| CDS seq | ATGGAGCTGTTCGAGCGCGCGAGGACGGTGCGGCTGCGCGGCCACCATGACAAGTACCTGTACGCGGAGGAGGACGAGTCGCGCGTCTCCCAGGACCGGAGCGCCTCGTCCCCGAACGCGCGGTGGTCCGTCGAGCCGGTCCCCCACGCCCCCGGCGTCCTCCGCCTCCGCAGCCACTACGGCCGCTACCTCTCCGCCTCCAACGAGCCCTTCCTCCTCGGCGTCACCGGCCGCAAGGTCCTCCAGGCCCTCCCCCACCGCCTCGACTCCTCCGTCGAGTGGGTCCCCGTCCGCGACGGTGCCCACGCCCGCCTCCGCACCCGCTACGGCAACTACCTCCGCGCCAACGGCGGCCTCCCGCCGTGGCGCAACTCCGTCACCCACGACGTCCCCCACCGCCACGCCGGGTGGATCCTCTGGACCGTCGAGGTCGTCGAGGTCCTCCCGGAATCCCTCGTCCCCGCCCCCATCGCCTCCGACGACGACCCCGCCGCGCCGCATTACAAGACACCTTCTCGCGGGCCCTCTCCCGTGCCGACGCCGGCGCTGGCGCCTGCTTCGCCGCCGCGGCACCGTCCGGCGAGCCCACCTTCGTACTTAGCGCGGCCACCGCCGCCGCCACCGGGCTACATCGAGCCACCACAGGGATACATCGAGCCACCTCCACCGGAGCCCACCCTGGCGAGAATTGAGTCCACAGAATCCTTCTCGCTGCCGCTGCACAAGGTGGATGGGCGGGCGATCCACTACCACATTGGGGATGACAACGGCGACATCGGCGATGATCAGGAAGGACACTCATTCACGTTCAACGGGACTAGCCTGGAGGAGCTTTTGGAGAGGTTGCAGGAGGAGACGGGGCTCAACGACGTGATTATCTGCTCTCGTAGCCCGATCAATGGGAAGCTCATGCCCCTCCGCTTGCAGCTGCCGCCCAACAACGCCGCCATGCATATCGTGCTCGTGCGTGAGTCATCAAAAGTGGCAAAATCATTTCCATGA
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| Protein seq | MELFERARTVRLRGHHDKYLYAEEDESRVSQDRSASSPNARWSVEPVPHAPGVLRLRSHYGRYLSASNEPFLLGVTGRKVLQALPHRLDSSVEWVPVRDGAHARLRTRYGNYLRANGGLPPWRNSVTHDVPHRHAGWILWTVEVVEVLPESLVPAPIASDDDPAAPHYKTPSRGPSPVPTPALAPASPPRHRPASPPSYLARPPPPPPGYIEPPQGYIEPPPPEPTLARIESTESFSLPLHKVDGRAIHYHIGDDNGDIGDDQEGHSFTFNGTSLEELLERLQEETGLNDVIICSRSPINGKLMPLRLQLPPNNAAMHIVLVRESSKVAKSFP |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_07G005990 | OsN22_07G005990_01 | Chr07 | 5120687 | 5122977 | + | NAM | ||
| CDS seq | ATGGAGCTGTTCGAGCGCGCGAGGACGGTGCGGCTGCGCGGCCACCATGACAAGTACCTGTACGCGGAGGAGGACGAGTCGCGCGTCTCCCAGGACCGGAGCGCCTCGTCCCCGAACGCGCGGTGGTCCGTCGAGCCGGTCCCCCACGCCCCCGGCGTCCTCCGCCTCCGCAGCCACTACGGCCGCTACCTCTCCGCCTCCAACGAGCCCTTCCTCCTCGGCGTCACCGGCCGCAAGGTCCTCCAGGCCCTCCCCCACCGCCTCGACTCCTCCGTCGAGTGGGTCCCCGTCCGCGACGGTGCCCACGCCCGCCTCCGCACCCGCTACGGCAACTACCTCCGCGCCAACGGCGGCCTCCCGCCGTGGCGCAACTCCGTCACCCACGACGTCCCCCACCGCCACGCCGGGTGGATCCTCTGGACCGTCGAGGTCGTCGAGGTCCTCCCGGAATCCCTCGTCCCCGCCCCCATCGCCTCCGACGACGACCCCGCCGCGCCGCATTACAAGACACCTTCTCGCGGGCCCTCTCCCGTGCCGACGCCGGCGCTGGCGCCTGCTTCGCCGCCGCGGCACCGTCCGGCGAGCCCACCTTCGTACTTAGCGCGGCCACCGCCGCCGCCACCGGGCTACATCGAGCCACCACAGGGATACATCGAGCCACCTCCACCGGAGCCCACCCTGGCGAGAATTGAGTCCACAGAATCCTTCTCGCTGCCGCTGCACAAGGTGGATGGGCGGGCGATCCACTACCACATTGGGGATGACAACGGCGACATCGGCGATGATCAGGAAGGACACTCATTCACGTTCAACGGGACTAGCCTGGAGGAGCTTTTGGAGAGGTTGCAGGAGGAGACGGGGCTCAACGACGTGATTATCTGCTCTCGTAGCCCGATCAATGGGAAGCTCATGCCCCTCCGCTTGCAGCTGCCGCCCAACAACGCCGCCATGCATATCGTGCTCGTGCGTGAGTCATCAAAAGTGGCAAAATCATTTCCATGA
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| Protein seq | MELFERARTVRLRGHHDKYLYAEEDESRVSQDRSASSPNARWSVEPVPHAPGVLRLRSHYGRYLSASNEPFLLGVTGRKVLQALPHRLDSSVEWVPVRDGAHARLRTRYGNYLRANGGLPPWRNSVTHDVPHRHAGWILWTVEVVEVLPESLVPAPIASDDDPAAPHYKTPSRGPSPVPTPALAPASPPRHRPASPPSYLARPPPPPPGYIEPPQGYIEPPPPEPTLARIESTESFSLPLHKVDGRAIHYHIGDDNGDIGDDQEGHSFTFNGTSLEELLERLQEETGLNDVIICSRSPINGKLMPLRLQLPPNNAAMHIVLVRESSKVAKSFP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 1.100499 | 0.667416 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g09384 | RBH | 0.0 | 0.045621 | 0.458056 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0005910 | RBH | 0.238214 | 0.0 | 0.730664 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0005870 | RBH | 0.0 | 0.674237 | 1.832687 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0005780 | RBH | 0.0 | 0.0 | 3.932038 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0005700 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0005860 | RBH | 0.0 | 4.277620 | 4.619840 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0083400 | RBH | 0.1940925 | 0.5960595 | 0.1227875 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0006370 | RBH | 0.059689 | 0.0 | 2.468213 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0085200 | RBH | 1.6944165 | 0.7820415 | 1.0715035 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0005800 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0005800 | RBH | 0.112822 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0005840 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0005970 | RBH | 0.0 | 0.0 | 0.417089 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0005810 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G037910 | RBH | 0.066907 | 2.067999 | 1.215217 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0005790 | RBH | 0.0 | 0.0 | 3.091166 |
