Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_06G015420 | OGI:04046690 | 16/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr06:15750806-15751980 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGACTCAGGCTCAAGTTCCGAAGTAATTACACATATAGAAATTCAAAAAGAAATCGATACAATCCACGTCATAATCCATATTGGATTCCCCAATTTATTAAAGAAAAAAGGAGCAATCGAAGAATTAGAGAAAGATCTACAAAAAGAAGTTAGTTCTGTAAACCAGAGACTTAATATTGGGATCGAAAAAGTGAAAGAACCTTATAGACAACCTAACATTCTTGCAGAATATATAGCTTTCCAATTAAAAAATAGAGTTTCATTCCGAAAGGCAATGAAAAAAGCCATTGAATTAACTAAAAAAACAGATATAAAGGGAGTAAAAGTAAAAATTGCAGGCCGTCTCGCGGGAAAAGAAATTGCGCGTGCCGAATGCATCAAAAAAGGTAGACTTCCCCTCCAAACAATTCGCGCTAAAATTGATTATTGCTGCTATCCAATTCGAACTATCTATGGAGTATTAGATATGATGTTACAAATGCTTTACCTGCATTATGCTTCTGAAATTTCACTACTAGAAGGCCATATTCCGTTGATTCAGAAATTTTTTTTTGATGTGCAGGCCTGGAGCTATTTTTGGAAGCACAAACGTAAGGATCACATATGTACGTTACTACCTTTTCCTGCAAATACATATACACCACTTGGATGTACATACCCATTCTGCCTTGCTTTACATGTTAATTAACTTGATTGAGCAAATGTTTGCTGCATTGATCGGCCGGTGCCTCAAAGTACAATGAGTAAGTGACTGAAGGTAATTCATTAGCCTTTTATGTCTATATATGACCATAAAAATGTATGCAGGGTGCATCAGTCAAGCAAAAAGTATATGGCAATGGCACATTTCTTAGGGAAGGGATTTATGAGTTCAATGTCAAAATCCTCTCTATCAGTTGCTTATGTAGCTAAAAATAGGGAAGCAATATATTTATATTCACAGGATACTCTATGAGTTCAACATCAAAGTTATTTATAGTCACATGTTTCTTATATTCTAAATCCATATGTTGTTGATATGTGTTCTCCAATTGATCTGAATGCAGATTATCCTATCATAACATTAACAACGTTGGACCATACTTTTGGTGGGTGCTGCATGCAGTTATTATTATCAAAGCCATGAAAGGTATTTTACATTGTTACATCTTCTTCACCTTTATAGGTTTCTAA
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| CDS seq | ATGGACTCAGGCTCAAGTTCCGAAGTAATTACACATATAGAAATTCAAAAAGAAATCGATACAATCCACGTCATAATCCATATTGGATTCCCCAATTTATTAAAGAAAAAAGGAGCAATCGAAGAATTAGAGAAAGATCTACAAAAAGAAGTTAGTTCTGTAAACCAGAGACTTAATATTGGGATCGAAAAAGTGAAAGAACCTTATAGACAACCTAACATTCTTGCAGAATATATAGCTTTCCAATTAAAAAATAGAGTTTCATTCCGAAAGGCAATGAAAAAAGCCATTGAATTAACTAAAAAAACAGATATAAAGGGAGTAAAAGTAAAAATTGCAGGCCGTCTCGCGGGAAAAGAAATTGCGCGTGCCGAATGCATCAAAAAAGGCCTGGAGCTATTTTTGGAAGCACAAACATTATCCTATCATAACATTAACAACGTTGGACCATACTTTTGGTGGGTGCTGCATGCAGTTATTATTATCAAAGCCATGAAAGGTATTTTACATTGTTACATCTTCTTCACCTTTATAGGTTTCTAA
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| Protein seq | MDSGSSSEVITHIEIQKEIDTIHVIIHIGFPNLLKKKGAIEELEKDLQKEVSSVNQRLNIGIEKVKEPYRQPNILAEYIAFQLKNRVSFRKAMKKAIELTKKTDIKGVKVKIAGRLAGKEIARAECIKKGLELFLEAQTLSYHNINNVGPYFWWVLHAVIIIKAMKGILHCYIFFTFIGF |
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| Function | 30S ribosomal protein S3, chloroplastic [UniProtKB/Swiss-Prot:P0C485] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_06G015420 | OsN22_06G015420_01 | Chr06 | 15750806 | 15751980 | + | NAM | ||
| CDS seq | ATGGACTCAGGCTCAAGTTCCGAAGTAATTACACATATAGAAATTCAAAAAGAAATCGATACAATCCACGTCATAATCCATATTGGATTCCCCAATTTATTAAAGAAAAAAGGAGCAATCGAAGAATTAGAGAAAGATCTACAAAAAGAAGTTAGTTCTGTAAACCAGAGACTTAATATTGGGATCGAAAAAGTGAAAGAACCTTATAGACAACCTAACATTCTTGCAGAATATATAGCTTTCCAATTAAAAAATAGAGTTTCATTCCGAAAGGCAATGAAAAAAGCCATTGAATTAACTAAAAAAACAGATATAAAGGGAGTAAAAGTAAAAATTGCAGGCCGTCTCGCGGGAAAAGAAATTGCGCGTGCCGAATGCATCAAAAAAGGCCTGGAGCTATTTTTGGAAGCACAAACATTATCCTATCATAACATTAACAACGTTGGACCATACTTTTGGTGGGTGCTGCATGCAGTTATTATTATCAAAGCCATGAAAGGTATTTTACATTGTTACATCTTCTTCACCTTTATAGGTTTCTAA
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| Protein seq | MDSGSSSEVITHIEIQKEIDTIHVIIHIGFPNLLKKKGAIEELEKDLQKEVSSVNQRLNIGIEKVKEPYRQPNILAEYIAFQLKNRVSFRKAMKKAIELTKKTDIKGVKVKIAGRLAGKEIARAECIKKGLELFLEAQTLSYHNINNVGPYFWWVLHAVIIIKAMKGILHCYIFFTFIGF |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g16824 | RBH | 17.318314 | 12.998343 | 7.785769 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0015480 | SBH | 0.281660 | 4.048879 | 4.219406 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0020110 | RBH | 20.160227 | 3.098250 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0250300 | SBH | 3.7968365 | 10.6364145 | 29.416606 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0015270 | SBH | 0.314364 | 0.238787 | 2.088598 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0227600 | RBH | 1028.5620725 | 264.4079285 | 242.036064 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0015660 | SBH | 0.078873 | 0.219727 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0015600 | SBH | 0.406723 | 4.938557 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0010430 | RBH | 319.892578 | 1688.697632 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0021460 | RBH | 3.925312 | 0.0 | 18.279116 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0015390 | SBH | 0.565790 | 7.473816 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0015600 | SBH | 1.242196 | 20.409391 | 14.536360 |
