Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_06G015290 | OGI:06040980 | 16/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr06:15649828-15650762 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAATTTTTATTACCTGTTTTCCAGATCTTGGGTTGTGAAAGGGATGCTTTCACGGTCTCCATGCATCTCGGACAGCACACCCATTATACTACTTTGCGGTACGCGACATTGCTGCATAGTGTCTACAAACTCCATCAACGTGTCATCCCGTTGCTTGTACGATCTCATGTGCTTCATGGCTGTGGGTGATGGCATCAACGGGTGGTTGTGTTCTACAACAACATCATCAAAAACAACTGATACAACCTCTCCCTCTCTCATAACATTCCTCACCCTCACATATGCACGGCATCCAATCCTAGCTGATCCACGACGGCGTTCACGCTTAGTCTCATCCCCGCGGTATTTGTTCTTGCCCTCCCTGCTGCAACAAATTTCCCTGTGTGCTAACCTGCTCCGGCTCTTCCTCATGTCAAAACCGGCGTGCTCTGCGTATTTGTTATAGAACGCATAGGCCATATCGTACGATTCGAATTCAATGCCAAACTTGGGAACCATTTCATCCGAGACTTGAGCTCCCTAAAAAGTTATTTACATTTCACATCATCATCATGTAATCTTTACACGAGTAAAAAAAAATGCAATGTACACAGTCCAGACTATAAATAAATGGCACACTATAGATCCAAAACTATGAACATACACCAAACTTGAGACTGTCACGAGAAAGACAACTTACATGAATATGCATGACATTCCTCGTCGGCGTCCTCATCTGAGCATCATCTACACGTGGAGGGCGATCCATTCTGGTCGACGGGCTCCCTTTATGTCCTCCTCCATCTCCAACACCCAATTGCTGCAAACCCCCACGTTGAACATAACCATCTGGATGGACACCACTGCCTTACATCAAATGCGAACGATCTGCGCCAAGGGTTGGGACGTGCGATTGCACATCATATGGGTCGGGATCCTCACCTCTACTCGCCAT
More
|
||||||||||
| CDS seq | ATGGCGAGTAGAGGTGAGGATCCCGACCCATATGATGTGCAATCGCACGTCCCAACCCTTGGCGCAGATCGTTCGCATTTGATTGGTGTCCATCCAGATGGTTATGTTCAACGTGGGGGTTTGCAGCAATTGGGTGTTGGAGATGGAGGAGGACATAAAGGGAGCCCGTCGACCAGAATGGATCGCCCTCCACGTGTAGATGATGCTCAGATGAGGACGCCGACGAGGAATGTCATGCATATTCATGGAGCTCAAGTCTCGGATGAAATGGTTCCCAAGTTTGGCATTGAATTCGAATCGTACGATATGGCCTATGCGTTCTATAACAAATACGCAGAGCACGCCGGTTTTGACATGAGGAAGAGCCGGAGCAGGTTAGCACACAGGGAAATTTGTTGCAGCAGGGAGGGCAAGAACAAATACCGCGGGGATGAGACTAAGCGTGAACGCCGTCGTGGATCAGCTAGGATTGGATGCCGTGCATATGTGAGGGTGAGGAATGTTATGAGAGAGGGAGAGGTTGTATCAGTTGTTTTTGATGATGTTGTTGTAGAACACAACCACCCGTTGATGCCATCACCCACAGCCATGAAGCACATGAGATCGTACAAGCAACGGGATGACACGTTGATGGAGTTTGTAGACACTATGCAGCAATGTCGCGTACCGCAAAGTAGTATAATGGGTGTGCTGTCCGAGATGCATGGAGACCGTGAAAGCATCCCTTTCACAACCCAAGATCTGGAAAACAGGTAA
More
|
||||||||||
| Protein seq | MASRGEDPDPYDVQSHVPTLGADRSHLIGVHPDGYVQRGGLQQLGVGDGGGHKGSPSTRMDRPPRVDDAQMRTPTRNVMHIHGAQVSDEMVPKFGIEFESYDMAYAFYNKYAEHAGFDMRKSRSRLAHREICCSREGKNKYRGDETKRERRRGSARIGCRAYVRVRNVMREGEVVSVVFDDVVVEHNHPLMPSPTAMKHMRSYKQRDDTLMEFVDTMQQCRVPQSSIMGVLSEMHGDRESIPFTTQDLENR |
||||||||||
| Function | Protein FAR1-RELATED SEQUENCE 5 [UniProtKB/Swiss-Prot:Q9SZL8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_06G015290 | OsN22_06G015290_01 | Chr06 | 15649828 | 15650762 | - | NAM | ||
| CDS seq | ATGGCGAGTAGAGGTGAGGATCCCGACCCATATGATGTGCAATCGCACGTCCCAACCCTTGGCGCAGATCGTTCGCATTTGATTGGTGTCCATCCAGATGGTTATGTTCAACGTGGGGGTTTGCAGCAATTGGGTGTTGGAGATGGAGGAGGACATAAAGGGAGCCCGTCGACCAGAATGGATCGCCCTCCACGTGTAGATGATGCTCAGATGAGGACGCCGACGAGGAATGTCATGCATATTCATGGAGCTCAAGTCTCGGATGAAATGGTTCCCAAGTTTGGCATTGAATTCGAATCGTACGATATGGCCTATGCGTTCTATAACAAATACGCAGAGCACGCCGGTTTTGACATGAGGAAGAGCCGGAGCAGGTTAGCACACAGGGAAATTTGTTGCAGCAGGGAGGGCAAGAACAAATACCGCGGGGATGAGACTAAGCGTGAACGCCGTCGTGGATCAGCTAGGATTGGATGCCGTGCATATGTGAGGGTGAGGAATGTTATGAGAGAGGGAGAGGTTGTATCAGTTGTTTTTGATGATGTTGTTGTAGAACACAACCACCCGTTGATGCCATCACCCACAGCCATGAAGCACATGAGATCGTACAAGCAACGGGATGACACGTTGATGGAGTTTGTAGACACTATGCAGCAATGTCGCGTACCGCAAAGTAGTATAATGGGTGTGCTGTCCGAGATGCATGGAGACCGTGAAAGCATCCCTTTCACAACCCAAGATCTGGAAAACAGGTAA
More
|
|||||||
| Protein seq | MASRGEDPDPYDVQSHVPTLGADRSHLIGVHPDGYVQRGGLQQLGVGDGGGHKGSPSTRMDRPPRVDDAQMRTPTRNVMHIHGAQVSDEMVPKFGIEFESYDMAYAFYNKYAEHAGFDMRKSRSRLAHREICCSREGKNKYRGDETKRERRRGSARIGCRAYVRVRNVMREGEVVSVVFDDVVVEHNHPLMPSPTAMKHMRSYKQRDDTLMEFVDTMQQCRVPQSSIMGVLSEMHGDRESIPFTTQDLENR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g25610 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0015650 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0015010 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0015620 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0015190 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0015310 | SBH | 0.399305 | 1.271517 | 2.654288 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0238100 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0014800 | SBH | 0.000000 | 0.000000 | 0.211955 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0225100 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0015270 | SBH | 0.021745 | 0.068518 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0017400 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0014950 | SBH | 0.637295 | 5.120687 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0015570 | SBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0015010 | SBH | 0.028515 | 0.733965 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0015210 | SBH | 0.451214 | 5.574862 | 3.626108 |
