Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_05G021510 | OGI:05065990 | 16/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr05:25337512-25341141 | ||||||||
| Gene Symbol | GNS8, Gns8, OsGns8 | ||||||||||
| DNA seq | CGCACGCACGCACGCGTTGCATTTGCCTAGTCCTTCGGGTTGGTGTGGCTTCTGAAACCGACTCCTCCCCCACTCTTCTCCCACGCAAATCTGAGATTGTGAAGTGAGCGGTTTGCCTTTAGGCTTATATATACGGAGACCTTAACACCACGCAGAGAGAGAGGAAGGAGACGCGCGCCCGCAGGTTCAGATAGTTTCAGGCTTGGGAGGAAGGAAGGAGAGGCAGAGAGAGAATTTTTGTCTGAGAGAATTCAGATTTCAGAGAGATAATTTTCGTCTGAAGAATTGTGTATCGATCGATGTCTGGTGGTGTGATCAGCATGGTGGTCGCGCCATGGATTCTCGCTTGCGGGTTCTTGCTCTGCTCATCCTCCTTCCTCGGTGAGAACAGTTCTCAGTTCATTGGTTCATCTTTCTGTTTTTTTTTTTCAGTTTTTTTACCTTGCTTGCAATTTCTTCTGTTTTCTTTACCTCAAGGGTGATCGGTTAGCTTCAATCTATACATGAGTTCATCTGAGGTTTAGAATTACGTTTAATCTCTTATAGTAGATTATAGTGTATGAATGGTTACAGCATGTTTCTCATAGCTAGAGTCGCAGTTTCTTCAATCTGTTCTTGACGTCTAGCTAGCTACTTTCATCGCGTTCTGTTCATAGCAGTTTTTTTTCTTTTTTTGAAGAACGTTCATAGCTAGGTTGGTTTTGTCTCCCATCACGTCTTGTTTTGTTTCTTGATTTGAGCTTATACTGCCATTAGGGTAAAGGATTTTCTTTTAACTTTGAGGGATCCTTTGGGATAAAGATGGCGCCAAATGTCTGCTTCGATAATTAATTATCGATTGCAGGTAGAGCCGTATAGGTGGTTGCCAGGCTTATTCTTTGTGTTCTTGGTTAGGTTTCTTAAAGAAAGAAATCCATCCTGCTGAGGAAACACTGCATGATTGGTTTCAGGAGGAATGCTGCGACTGTAGCTATATTTATTTTGTGGGTTTTCAATTTTTTAATTACCCATTTATCGTACTGGACAAAACTTCGGTAATACTCCAGTATTTAGGAGAAGGAAAAGGATAACAACAATATTGACATCAGCATCCTGATTGGACAGATTTCGATTACAGTACAAATATATTTCGTATGGTTCAGAAAAATAACTGTATCTAGTCCACTGGGCCTATGATGCGTTCTTACTTCCTTAGACCAGTTCTGTTCTTTCAGTAAAAGTTTAGCTAAACCTACCTAAATAATTTAAATAGGTCATATCTGCCATTATTTATTAGATGTTACATCTCAACCAAAATATATATCTTATTCTGCCAATAGTTTTTCTGATTGACGAAATGAAAAAGGGTAACACTTTTGCATTGATGTTTAAATCAAACTAAACTGATGTTGATATCGTTGTCATCTCAATATGACATAACACACCGTCACTGGATAGGATTATGTCTTTTCTTAATCTTGTAGTTTTTTTTTTCAACATCAGACAACCTAAACCACCATTTTTGCTGTTATCTTTGATTCCAGTGCATCTTTGACTCTTTGTATATCTTATCCAGTGTGCTTTGATGAAACAACTATAATTAGGCAGACCTAGATGATGCTGTAAACCTAGATAAGATATAATCCATTACCATATGAACGTATCTAAACAGCATCACATTGTCTACAATTACAACAAAAAAGACATTGCTGCGGTTTTAATATCTTTGTTTATTTCTGGTTGAAAGCGATGTACTTGGATATATTTGACTCCATGGACATTGACGTTTACTGTTTGCTCCTTGACGCCAAGTAGAAAATGGTTTGTGCATTTTGCATCTTATTTTTTGTAGTGTGAATGACGGAATTGGACCTGTGTAGTACGTTCTATAAGTCCTTAGGTTGGAAACTTGGAATAGCCAGCAGAAAAGACGTATAGTGATGTGGAGTTGTGCACGGGCTTCACTTGGAAAATTTTATCTGGTCCCAACTCTTCTCCTGGGTTTGTTGGCTAACCACTCGCCTAATCTAGCTAGGAGTTCAGTTTCTGCAAGTCAGGTTACACACCTAATTCATTGTTCTTCATTTCATAATGTTAACCTAAACATGATAGGTTTGGCATTGCGGATGTGAACAAGGCTAATGATTGCAACTTCTCACAAGTCCACTTAATTTTCTCATCTCAAATATATATATATATATATATATATATATATATATATATATATATATATATATTTGCTCCAAAGTTGAAACAAATATAAATTGATCATTTGACTAATGTAAATTGTATCATACACCCTCCATCCCACAAAATATAGCATTTTCTAGTACAACGAATCTGAATAAAGATGTTTAGATTCGTTGTACTAGTGTGATCTCTCCTAGGTTTTTTTTTTTTTTGATAGATGGAGTAGCTGTATAATGAATGAAAATTACTGAAAAAAAAAGTTGTAAGTTGTAACTCATCCGTGTGGCAAAATGATGCAGGAGCTGAAGGCGCCATTGGTGTGAACTACGGCATGCTGGGGAACAACCTGCCGTCGCCGGCGCAGGTGATCTCCATGTACAAGGCCAAGAACATCAACTACGTCCGCCTCTTCCACCCGGACACCGCCGTCCTCGCCGCGCTCCGCAACTCCGGCATCGGCGTCGTCCTCGGCACGTACAACGAGGACCTCGCCCGCCTCGCCTCCGACCCCTCGTTTGCCGCCTCCTGGGTCAGCTCCTACGTCCAGCCCTTCGCCGGCGCCGTCAGCTTCCGCTACATCAACGCCGGCAACGAGGTCATCCCCGGCGACCCCGCCGCCAACGTCCTCCCGGCCATGCGCAACCTCGACGCCGCGCTCAAGGCCGCCGGGATCAGCGGCATCCCGGTCACCACCGCCGTCGCCACGTCCGTGCTCGGCGTCTCGTACCCGCCGTCGCAGGGCGCGTTCTCGGAGGCGGCGTCGCCGTACATGGCGCCGATCGTCGCCTACCTCGCGTCCAGGGGCGCGCCGCTGCTGGTGAACGTGTACCCCTACTTCGCGTACGCCGCGGACGCGGAGCGCGTGCAGCTCGGGTACGCGCTGCTGTCGGCGTCGCAGTCGGCGTCGGTGACCGACGGCGGCGTGACGTACACCAACATGTTCGACGCGATCGTGGACGCGGCGCACGCGGCGGTGGAGAAGGCGACGGGCGGGCAGGCGGTGGAGCTGGTGGTGTCGGAGACCGGCTGGCCGTCCGGTGGCGGCGGCGTGGGCGCCACCGTGGAGAACGCGGCGGCGTATAACAACAACCTGATCCGCCACGTCTCCGGCGGCGCCGGGACGCCGCGGCGGCCGGGGAAGCCGGTGGAGACGTACCTGTTCGCCATGTTCAACGAGAACCAGAAGCCCGAGGGCGTGGAGCAGCATTTCGGCCTCTTCCAGCCCGACATGACCGAAGTCTACCATGTCGACTTCGCGGCCTCCAGCTAGATTAGGCCCGGCCCATTTCACATTTCTTTCTTTCAGCTGCTGCTACTATTTTATTATTTGTCGGATACAGTATTTTCGTAGTTTCGGTTCGATCTCATGTCACCGGTTCTCTGATTTGGATTCATTGTTCATTTGTTGTCGATGCACATTGGAGTATGATTTATTCAAACGCACGAATTTTACGAGAAGAT
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| CDS seq | ATGTCTGGTGGTGTGATCAGCATGGTGGTCGCGCCATGGATTCTCGCTTGCGGGTTCTTGCTCTGCTCATCCTCCTTCCTCGGAGCTGAAGGCGCCATTGGTGTGAACTACGGCATGCTGGGGAACAACCTGCCGTCGCCGGCGCAGGTGATCTCCATGTACAAGGCCAAGAACATCAACTACGTCCGCCTCTTCCACCCGGACACCGCCGTCCTCGCCGCGCTCCGCAACTCCGGCATCGGCGTCGTCCTCGGCACGTACAACGAGGACCTCGCCCGCCTCGCCTCCGACCCCTCGTTTGCCGCCTCCTGGGTCAGCTCCTACGTCCAGCCCTTCGCCGGCGCCGTCAGCTTCCGCTACATCAACGCCGGCAACGAGGTCATCCCCGGCGACCCCGCCGCCAACGTCCTCCCGGCCATGCGCAACCTCGACGCCGCGCTCAAGGCCGCCGGGATCAGCGGCATCCCGGTCACCACCGCCGTCGCCACGTCCGTGCTCGGCGTCTCGTACCCGCCGTCGCAGGGCGCGTTCTCGGAGGCGGCGTCGCCGTACATGGCGCCGATCGTCGCCTACCTCGCGTCCAGGGGCGCGCCGCTGCTGGTGAACGTGTACCCCTACTTCGCGTACGCCGCGGACGCGGAGCGCGTGCAGCTCGGGTACGCGCTGCTGTCGGCGTCGCAGTCGGCGTCGGTGACCGACGGCGGCGTGACGTACACCAACATGTTCGACGCGATCGTGGACGCGGCGCACGCGGCGGTGGAGAAGGCGACGGGCGGGCAGGCGGTGGAGCTGGTGGTGTCGGAGACCGGCTGGCCGTCCGGTGGCGGCGGCGTGGGCGCCACCGTGGAGAACGCGGCGGCGTATAACAACAACCTGATCCGCCACGTCTCCGGCGGCGCCGGGACGCCGCGGCGGCCGGGGAAGCCGGTGGAGACGTACCTGTTCGCCATGTTCAACGAGAACCAGAAGCCCGAGGGCGTGGAGCAGCATTTCGGCCTCTTCCAGCCCGACATGACCGAAGTCTACCATGTCGACTTCGCGGCCTCCAGCTAG
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| Protein seq | MSGGVISMVVAPWILACGFLLCSSSFLGAEGAIGVNYGMLGNNLPSPAQVISMYKAKNINYVRLFHPDTAVLAALRNSGIGVVLGTYNEDLARLASDPSFAASWVSSYVQPFAGAVSFRYINAGNEVIPGDPAANVLPAMRNLDAALKAAGISGIPVTTAVATSVLGVSYPPSQGAFSEAASPYMAPIVAYLASRGAPLLVNVYPYFAYAADAERVQLGYALLSASQSASVTDGGVTYTNMFDAIVDAAHAAVEKATGGQAVELVVSETGWPSGGGGVGATVENAAAYNNNLIRHVSGGAGTPRRPGKPVETYLFAMFNENQKPEGVEQHFGLFQPDMTEVYHVDFAASS |
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| Function | Putative glucan endo-1,3-beta-glucosidase GVI (Fragment) [UniProtKB/Swiss-Prot:Q02439] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_05G021510 | OsN22_05G021510_01 | Chr05 | 25337512 | 25341141 | + | NAM | ||
| CDS seq | ATGTCTGGTGGTGTGATCAGCATGGTGGTCGCGCCATGGATTCTCGCTTGCGGGTTCTTGCTCTGCTCATCCTCCTTCCTCGGAGCTGAAGGCGCCATTGGTGTGAACTACGGCATGCTGGGGAACAACCTGCCGTCGCCGGCGCAGGTGATCTCCATGTACAAGGCCAAGAACATCAACTACGTCCGCCTCTTCCACCCGGACACCGCCGTCCTCGCCGCGCTCCGCAACTCCGGCATCGGCGTCGTCCTCGGCACGTACAACGAGGACCTCGCCCGCCTCGCCTCCGACCCCTCGTTTGCCGCCTCCTGGGTCAGCTCCTACGTCCAGCCCTTCGCCGGCGCCGTCAGCTTCCGCTACATCAACGCCGGCAACGAGGTCATCCCCGGCGACCCCGCCGCCAACGTCCTCCCGGCCATGCGCAACCTCGACGCCGCGCTCAAGGCCGCCGGGATCAGCGGCATCCCGGTCACCACCGCCGTCGCCACGTCCGTGCTCGGCGTCTCGTACCCGCCGTCGCAGGGCGCGTTCTCGGAGGCGGCGTCGCCGTACATGGCGCCGATCGTCGCCTACCTCGCGTCCAGGGGCGCGCCGCTGCTGGTGAACGTGTACCCCTACTTCGCGTACGCCGCGGACGCGGAGCGCGTGCAGCTCGGGTACGCGCTGCTGTCGGCGTCGCAGTCGGCGTCGGTGACCGACGGCGGCGTGACGTACACCAACATGTTCGACGCGATCGTGGACGCGGCGCACGCGGCGGTGGAGAAGGCGACGGGCGGGCAGGCGGTGGAGCTGGTGGTGTCGGAGACCGGCTGGCCGTCCGGTGGCGGCGGCGTGGGCGCCACCGTGGAGAACGCGGCGGCGTATAACAACAACCTGATCCGCCACGTCTCCGGCGGCGCCGGGACGCCGCGGCGGCCGGGGAAGCCGGTGGAGACGTACCTGTTCGCCATGTTCAACGAGAACCAGAAGCCCGAGGGCGTGGAGCAGCATTTCGGCCTCTTCCAGCCCGACATGACCGAAGTCTACCATGTCGACTTCGCGGCCTCCAGCTAG
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| Protein seq | MSGGVISMVVAPWILACGFLLCSSSFLGAEGAIGVNYGMLGNNLPSPAQVISMYKAKNINYVRLFHPDTAVLAALRNSGIGVVLGTYNEDLARLASDPSFAASWVSSYVQPFAGAVSFRYINAGNEVIPGDPAANVLPAMRNLDAALKAAGISGIPVTTAVATSVLGVSYPPSQGAFSEAASPYMAPIVAYLASRGAPLLVNVYPYFAYAADAERVQLGYALLSASQSASVTDGGVTYTNMFDAIVDAAHAAVEKATGGQAVELVVSETGWPSGGGGVGATVENAAAYNNNLIRHVSGGAGTPRRPGKPVETYLFAMFNENQKPEGVEQHFGLFQPDMTEVYHVDFAASS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.304493 | 0.576429 | 0.657165 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0495900 | RBH | 6.633122 | 4.024232 | 1.760226 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g41610 | RBH | 4.338512 | 2.615961 | 0.437937 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0495900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0022170 | RBH | 0.953744 | 24.457031 | 2.292395 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0022130 | RBH | 0.409114 | 0.746489 | 1.163418 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0022060 | RBH | 2.655202 | 8.282376 | 2.788100 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0022050 | RBH | 0.392951 | 0.496912 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0022130 | RBH | 7.703352 | 2.518553 | 5.780600 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0377700 | RBH | 14.7771245 | 14.801128 | 0.091907 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0021710 | RBH | 0.945314 | 0.411463 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0386800 | RBH | 12.5387825 | 6.580813 | 0.135197 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0021990 | RBH | 0.730390 | 0.177284 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0021920 | RBH | 1.351887 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0022040 | RBH | 16.821266 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0022090 | RBH | 2.058938 | 0.464027 | 0.682095 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0022070 | RBH | 0.889364 | 4.989159 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G036450 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0021920 | RBH | 7.454451 | 0.000000 | 2.835673 |
