Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_05G006930 | OGI:05018170 | 16/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr05:6494924-6496439 | ||||||||
| Gene Symbol | CIPK20, OsCIPK20, OsSnRK3.15, SnRK3.15 | ||||||||||
| DNA seq | AGCAATCTATTGTTTTCTCTCTTCATTTATATAAACTATAAATGAAACACGATTTATTCGGAAACTCAAATTTACTTCCAGCAGATGTCGTTCAGCGACGGCCTGAGGTCTCTGTTGCAGAACGCCTGGTACTCCAGCGTGTCGCCGGCCGTCTTCTTCACCTCGACGACGTAGCACGACGGCGAAACCTCGAAGATCTCGGCGTCAATGGCGAGCTGCCCTTTCCTCCCTTCCTTCCACCCCTGCAGCTTCACCGCCATCCCGTCCTCTTCTTGCCTCTTCTTCTGCTTCTTCTTCACCGTGAAGTGCTCCGTCTCCGCGATCTCCTCCAGCCTCGACACGATCGCCGTCGCCGGCTTCCCGGTGACGAACAGCTGATCCTGCGTCCTGCTGCTGTGGCCATGGCAGCAGAACATCCCTGACAGGTCGAATCCCTGCGAGAGCGAGATGATGTCGAACGCGTTCAAGCTCGCCGGCTTCATGTTCATGGCGGCGTTCGCTGGTTTCTCCTCCTCGTTGAGTTTCATGGTGTTCGAGCTTGCCGGCCGCTTGGTGTGTCCCTTCTTGAACCATGGATGCTTGACGAGCTCGTCGATGGTGATGCGAGTTGTAGGGTTTGGGTCGAGGAGTCTGGAGATGAGGCTGCGTGCGTCGGGGGTGAACCAGTCGGGGACCTTGAACTCGCCATTGGTGATCTTCTTGTACATCTCCATGAGGTTGGAATCGAAGAACGGGAGGTAGCCGGCGAGGAGGAGGAAGAGGATGACGCCGCAGGACCAGACGTCGGCGGTGGCCCCGTCGTAGCCCTTGTCGCCGATGATCTCCGGCGCGACGTACGACGGCGTGCCGCACGTCGTGTGGAGGAGGCCGTCGTGCCGCCGCGACGCGCTGAGCGCGCTGAGCCCGAAGTCGGTGACCTTGAGGTTGCCGCCGCCGCCGCTGCCGTCGTCGTCGACGAGGAGGTTCTCCGGCTTGAGGTCGCGGTGGTAGACGCCGCGGCTGTGGCAGAAGTCGACGGCGGCGACGAGCTGGTGGAAGTACCTCCTCGCCGCGTCCTCCCCGAGGCGGCCGCCGCCGGCGACCAGCCTGGCGAGGAGCTCGCCGCCGCGGACGAGCTCCATGACGAAGTAGATCTTGCTCCTGCTGGCCATCACCTCGTGGAGGCGGACCACGTTGGGGTGGCGGCCGACGAGCCGCATGACGGCGACCTCGCGCTCGATCTGGTCGACCATGCCGGCGCCGGCGCGCAGCGCCTTCTCCTTGTCGATCACCTTCACGGCGACGGTCTCGCCGGACACGAGGCTCCTGGCCTGGTACACCTTGGAGAACGTGCCGTGCCCCAGCGAGCGGCCGAGCTCGTACCGGCTCATCACCACGGTGCCCTTCTCCGGCATCTTGACACCGGCGCCCGGCGGCGCCGCCACCGGCAGCTGGTGGAGGCGACGGCCGGATTAGTGTATGTTCACGGCGGCCATGGCTGAACGTGGAGAGCCCATGTCGTTAATGGGTGAGAGAC
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| CDS seq | ATGCCGGAGAAGGGCACCGTGGTGATGAGCCGGTACGAGCTCGGCCGCTCGCTGGGGCACGGCACGTTCTCCAAGGTGTACCAGGCCAGGAGCCTCGTGTCCGGCGAGACCGTCGCCGTGAAGGTGATCGACAAGGAGAAGGCGCTGCGCGCCGGCGCCGGCATGGTCGACCAGATCGAGCGCGAGGTCGCCGTCATGCGGCTCGTCGGCCGCCACCCCAACGTGGTCCGCCTCCACGAGGTGATGGCCAGCAGGAGCAAGATCTACTTCGTCATGGAGCTCGTCCGCGGCGGCGAGCTCCTCGCCAGGCTGGTCGCCGGCGGCGGCCGCCTCGGGGAGGACGCGGCGAGGAGGTACTTCCACCAGCTCGTCGCCGCCGTCGACTTCTGCCACAGCCGCGGCGTCTACCACCGCGACCTCAAGCCGGAGAACCTCCTCGTCGACGACGACGGCAGCGGCGGCGGCGGCAACCTCAAGGTCACCGACTTCGGGCTCAGCGCGCTCAGCGCGTCGCGGCGGCACGACGGCCTCCTCCACACGACGTGCGGCACGCCGTCGTACGTCGCGCCGGAGATCATCGGCGACAAGGGCTACGACGGGGCCACCGCCGACGTCTGGTCCTGCGGCGTCATCCTCTTCCTCCTCCTCGCCGGCTACCTCCCGTTCTTCGATTCCAACCTCATGGAGATGTACAAGAAGATCACCAATGGCGAGTTCAAGGTCCCCGACTGGTTCACCCCCGACGCACGCAGCCTCATCTCCAGACTCCTCGACCCAAACCCTACAACTCGCATCACCATCGACGAGCTCGTCAAGCATCCATGGTTCAAGAAGGGACACACCAAGCGGCCGGCAAGCTCGAACACCATGAAACTCAACGAGGAGGAGAAACCAGCGAACGCCGCCATGAACATGAAGCCGGCGAGCTTGAACGCGTTCGACATCATCTCGCTCTCGCAGGGATTCGACCTGTCAGGGATGTTCTGCTGCCATGGCCACAGCAGCAGGACGCAGGATCAGCTGTTCGTCACCGGGAAGCCGGCGACGGCGATCGTGTCGAGGCTGGAGGAGATCGCGGAGACGGAGCACTTCACGGTGAAGAAGAAGCAGAAGAAGAGGCAAGAAGAGGACGGGATGGCGGTGAAGCTGCAGGGGTGGAAGGAAGGGAGGAAAGGGCAGCTCGCCATTGACGCCGAGATCTTCGAGGTTTCGCCGTCGTGCTACGTCGTCGAGGTGAAGAAGACGGCCGGCGACACGCTGGAGTACCAGGCGTTCTGCAACAGAGACCTCAGGCCGTCGCTGAACGACATCTGCTGGAAGTAA
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| Protein seq | MPEKGTVVMSRYELGRSLGHGTFSKVYQARSLVSGETVAVKVIDKEKALRAGAGMVDQIEREVAVMRLVGRHPNVVRLHEVMASRSKIYFVMELVRGGELLARLVAGGGRLGEDAARRYFHQLVAAVDFCHSRGVYHRDLKPENLLVDDDGSGGGGNLKVTDFGLSALSASRRHDGLLHTTCGTPSYVAPEIIGDKGYDGATADVWSCGVILFLLLAGYLPFFDSNLMEMYKKITNGEFKVPDWFTPDARSLISRLLDPNPTTRITIDELVKHPWFKKGHTKRPASSNTMKLNEEEKPANAAMNMKPASLNAFDIISLSQGFDLSGMFCCHGHSSRTQDQLFVTGKPATAIVSRLEEIAETEHFTVKKKQKKRQEEDGMAVKLQGWKEGRKGQLAIDAEIFEVSPSCYVVEVKKTAGDTLEYQAFCNRDLRPSLNDICWK |
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| Function | CBL-interacting protein kinase 20 [UniProtKB/Swiss-Prot:Q60EY8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_05G006930 | OsN22_05G006930_01 | Chr05 | 6494924 | 6496439 | - | NAM | ||
| CDS seq | ATGCCGGAGAAGGGCACCGTGGTGATGAGCCGGTACGAGCTCGGCCGCTCGCTGGGGCACGGCACGTTCTCCAAGGTGTACCAGGCCAGGAGCCTCGTGTCCGGCGAGACCGTCGCCGTGAAGGTGATCGACAAGGAGAAGGCGCTGCGCGCCGGCGCCGGCATGGTCGACCAGATCGAGCGCGAGGTCGCCGTCATGCGGCTCGTCGGCCGCCACCCCAACGTGGTCCGCCTCCACGAGGTGATGGCCAGCAGGAGCAAGATCTACTTCGTCATGGAGCTCGTCCGCGGCGGCGAGCTCCTCGCCAGGCTGGTCGCCGGCGGCGGCCGCCTCGGGGAGGACGCGGCGAGGAGGTACTTCCACCAGCTCGTCGCCGCCGTCGACTTCTGCCACAGCCGCGGCGTCTACCACCGCGACCTCAAGCCGGAGAACCTCCTCGTCGACGACGACGGCAGCGGCGGCGGCGGCAACCTCAAGGTCACCGACTTCGGGCTCAGCGCGCTCAGCGCGTCGCGGCGGCACGACGGCCTCCTCCACACGACGTGCGGCACGCCGTCGTACGTCGCGCCGGAGATCATCGGCGACAAGGGCTACGACGGGGCCACCGCCGACGTCTGGTCCTGCGGCGTCATCCTCTTCCTCCTCCTCGCCGGCTACCTCCCGTTCTTCGATTCCAACCTCATGGAGATGTACAAGAAGATCACCAATGGCGAGTTCAAGGTCCCCGACTGGTTCACCCCCGACGCACGCAGCCTCATCTCCAGACTCCTCGACCCAAACCCTACAACTCGCATCACCATCGACGAGCTCGTCAAGCATCCATGGTTCAAGAAGGGACACACCAAGCGGCCGGCAAGCTCGAACACCATGAAACTCAACGAGGAGGAGAAACCAGCGAACGCCGCCATGAACATGAAGCCGGCGAGCTTGAACGCGTTCGACATCATCTCGCTCTCGCAGGGATTCGACCTGTCAGGGATGTTCTGCTGCCATGGCCACAGCAGCAGGACGCAGGATCAGCTGTTCGTCACCGGGAAGCCGGCGACGGCGATCGTGTCGAGGCTGGAGGAGATCGCGGAGACGGAGCACTTCACGGTGAAGAAGAAGCAGAAGAAGAGGCAAGAAGAGGACGGGATGGCGGTGAAGCTGCAGGGGTGGAAGGAAGGGAGGAAAGGGCAGCTCGCCATTGACGCCGAGATCTTCGAGGTTTCGCCGTCGTGCTACGTCGTCGAGGTGAAGAAGACGGCCGGCGACACGCTGGAGTACCAGGCGTTCTGCAACAGAGACCTCAGGCCGTCGCTGAACGACATCTGCTGGAAGTAA
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| Protein seq | MPEKGTVVMSRYELGRSLGHGTFSKVYQARSLVSGETVAVKVIDKEKALRAGAGMVDQIEREVAVMRLVGRHPNVVRLHEVMASRSKIYFVMELVRGGELLARLVAGGGRLGEDAARRYFHQLVAAVDFCHSRGVYHRDLKPENLLVDDDGSGGGGNLKVTDFGLSALSASRRHDGLLHTTCGTPSYVAPEIIGDKGYDGATADVWSCGVILFLLLAGYLPFFDSNLMEMYKKITNGEFKVPDWFTPDARSLISRLLDPNPTTRITIDELVKHPWFKKGHTKRPASSNTMKLNEEEKPANAAMNMKPASLNAFDIISLSQGFDLSGMFCCHGHSSRTQDQLFVTGKPATAIVSRLEEIAETEHFTVKKKQKKRQEEDGMAVKLQGWKEGRKGQLAIDAEIFEVSPSCYVVEVKKTAGDTLEYQAFCNRDLRPSLNDICWK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.936262 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0208100 | RBH | 0.0 | 0.0 | 3.487472 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g11790 | RBH | 0.0 | 0.0 | 0.896313 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0208100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0007120 | RBH | 0.0 | 0.0 | 2.390504 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0007160 | RBH | 0.000000 | 0.000000 | 3.712291 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0007050 | RBH | 0.0 | 0.0 | 4.489834 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0007100 | RBH | 0.0 | 0.033572 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0007210 | RBH | 0.0 | 0.0 | 1.703722 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0100400 | RBH | 0.002685 | 0.0473145 | 0.006639 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0007050 | RBH | 0.0 | 0.0 | 2.341217 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0099400 | RBH | 0.011561 | 0.0060745 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0007100 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0007030 | RBH | 0.0 | 2.283475 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0007110 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0007200 | RBH | 0.0 | 0.0 | 0.915434 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0007150 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G007460 | RBH | 1.322666 | 2.154238 | 5.115108 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0007170 | RBH | 0.0 | 0.0 | 10.302863 |
