Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_05G005820 | OGI:05015300 | 15/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr05:5087947-5089179 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGACCACCGACCTCCTCCTCCTCCTCCTCCTCCTCCTCCTGCTTCTGTCGTCATCCCGCCTCGCCCTCGCCGCCGCGTTCGGCGTCTGGATCAATGGCGCCGCCTCCTCGTCGCCGCAGAGCCAGGAGTACGAGGCGCTGCAGGCGCTGAAGGCGGCGGTGGTGGAGGACCCGCGCGGCGCGCTGGCGTCGTGGCAGGGGCCCAACGTGTGCGCGTACAGGGGGGTGTACTGCTCGGCGCCGCCCGACGACGCCGCCGCGTCGGGCGCGGTGGTCGCCGGCATCGACCTCAACCGCGCCAACCTGAGGGGGACGCTCCCGGCGGCGGTGTCCCTCCTCGCCCACCTCACGTTCCTCCACCTCAACAGCAACCGCCTCGCCGGCCAGCCCCCCGACTCGCTCCGCGACCTCCAGTACCTCACCGAGCTCGACCTCAGCAACAACCTCTTCTCCGGCTCGTTCCCGGCGGCGGCGCTGCTCATCCCGTCGCTCGTCTACCTCGACCTCCGCTTCAACGCCTTCTCCGGCGGGATCCCCGCCGAGGCCTTCGCCAAGAGCAGCCTCGACGCGCTCTTCCTCAACAACAACCAGTTCGACGGCGAGATCCCGGAGACGCTCTGGTCGTCTCCGGCGACGGTGATCACGCTCGCGAACAACCGCCTCACCGGCCCCGTCCCGTCGGCGTACGGCTACGGCGGCCGCGTCCGGGAGGTGCTGTTCCTCAACAACAAGCTCACCGGCTGCATTCCGGAGGAGCTCGGGTTCTTGCCCACCATCGAGGTGCTCGACCTGAGCTACAACTCGCTCTCCGGCCACCTCCCGCCCACGCTGTCCTGCCTCGCCGGCATCGAGGTGCTCAACATCGCGCACAACCAGTTCACCGGCGAGCTCCCGGACCTCGTCTGCGACCTCAAGCGGATCACCAACCTGTCCGTCTCCTTCAACTTCTTCTCCGGCATCAGCCAGCACTGCGACCGCCTCGCCGGCCGCAGCGTGTTCGACTTCGTCGGCAACTGCGTCCCCGGCCGCGGCCTGCAGCGCCCGCCGCCGGAGTGCGACGGCGGCCAGGGCGACGGCGGCCTCAGCTGCCTGCGCAGCATCCCCGTCACCCGCCCCGTCCCCTGCGCCCAGGCCTCCGTCTCCGTCGGCGTCGGCGTCGGCGTCGGCGTCATCGTCCGCGGCGCGATGCCGTCGTTCGGCGCCGGCGGCGTGGTCACGGTCACCGTGCCATGA
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| CDS seq | ATGACCACCGACCTCCTCCTCCTCCTCCTCCTCCTCCTCCTGCTTCTGTCGTCATCCCGCCTCGCCCTCGCCGCCGCGTTCGGCGTCTGGATCAATGGCGCCGCCTCCTCGTCGCCGCAGAGCCAGGAGTACGAGGCGCTGCAGGCGCTGAAGGCGGCGGTGGTGGAGGACCCGCGCGGCGCGCTGGCGTCGTGGCAGGGGCCCAACGTGTGCGCGTACAGGGGGGTGTACTGCTCGGCGCCGCCCGACGACGCCGCCGCGTCGGGCGCGGTGGTCGCCGGCATCGACCTCAACCGCGCCAACCTGAGGGGGACGCTCCCGGCGGCGGTGTCCCTCCTCGCCCACCTCACGTTCCTCCACCTCAACAGCAACCGCCTCGCCGGCCAGCCCCCCGACTCGCTCCGCGACCTCCAGTACCTCACCGAGCTCGACCTCAGCAACAACCTCTTCTCCGGCTCGTTCCCGGCGGCGGCGCTGCTCATCCCGTCGCTCGTCTACCTCGACCTCCGCTTCAACGCCTTCTCCGGCGGGATCCCCGCCGAGGCCTTCGCCAAGAGCAGCCTCGACGCGCTCTTCCTCAACAACAACCAGTTCGACGGCGAGATCCCGGAGACGCTCTGGTCGTCTCCGGCGACGGTGATCACGCTCGCGAACAACCGCCTCACCGGCCCCGTCCCGTCGGCGTACGGCTACGGCGGCCGCGTCCGGGAGGTGCTGTTCCTCAACAACAAGCTCACCGGCTGCATTCCGGAGGAGCTCGGGTTCTTGCCCACCATCGAGGTGCTCGACCTGAGCTACAACTCGCTCTCCGGCCACCTCCCGCCCACGCTGTCCTGCCTCGCCGGCATCGAGGTGCTCAACATCGCGCACAACCAGTTCACCGGCGAGCTCCCGGACCTCGTCTGCGACCTCAAGCGGATCACCAACCTGTCCGTCTCCTTCAACTTCTTCTCCGGCATCAGCCAGCACTGCGACCGCCTCGCCGGCCGCAGCGTGTTCGACTTCGTCGGCAACTGCGTCCCCGGCCGCGGCCTGCAGCGCCCGCCGCCGGAGTGCGACGGCGGCCAGGGCGACGGCGGCCTCAGCTGCCTGCGCAGCATCCCCGTCACCCGCCCCGTCCCCTGCGCCCAGGCCTCCGTCTCCGTCGGCGTCGGCGTCGGCGTCGGCGTCATCGTCCGCGGCGCGATGCCGTCGTTCGGCGCCGGCGGCGTGGTCACGGTCACCGTGCCATGA
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| Protein seq | MTTDLLLLLLLLLLLLSSSRLALAAAFGVWINGAASSSPQSQEYEALQALKAAVVEDPRGALASWQGPNVCAYRGVYCSAPPDDAAASGAVVAGIDLNRANLRGTLPAAVSLLAHLTFLHLNSNRLAGQPPDSLRDLQYLTELDLSNNLFSGSFPAAALLIPSLVYLDLRFNAFSGGIPAEAFAKSSLDALFLNNNQFDGEIPETLWSSPATVITLANNRLTGPVPSAYGYGGRVREVLFLNNKLTGCIPEELGFLPTIEVLDLSYNSLSGHLPPTLSCLAGIEVLNIAHNQFTGELPDLVCDLKRITNLSVSFNFFSGISQHCDRLAGRSVFDFVGNCVPGRGLQRPPPECDGGQGDGGLSCLRSIPVTRPVPCAQASVSVGVGVGVGVIVRGAMPSFGAGGVVTVTVP |
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| Function | Leucine-rich repeat extensin-like protein 3 [UniProtKB/Swiss-Prot:Q9T0K5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_05G005820 | OsN22_05G005820_01 | Chr05 | 5087947 | 5089179 | + | NAM | ||
| CDS seq | ATGACCACCGACCTCCTCCTCCTCCTCCTCCTCCTCCTCCTGCTTCTGTCGTCATCCCGCCTCGCCCTCGCCGCCGCGTTCGGCGTCTGGATCAATGGCGCCGCCTCCTCGTCGCCGCAGAGCCAGGAGTACGAGGCGCTGCAGGCGCTGAAGGCGGCGGTGGTGGAGGACCCGCGCGGCGCGCTGGCGTCGTGGCAGGGGCCCAACGTGTGCGCGTACAGGGGGGTGTACTGCTCGGCGCCGCCCGACGACGCCGCCGCGTCGGGCGCGGTGGTCGCCGGCATCGACCTCAACCGCGCCAACCTGAGGGGGACGCTCCCGGCGGCGGTGTCCCTCCTCGCCCACCTCACGTTCCTCCACCTCAACAGCAACCGCCTCGCCGGCCAGCCCCCCGACTCGCTCCGCGACCTCCAGTACCTCACCGAGCTCGACCTCAGCAACAACCTCTTCTCCGGCTCGTTCCCGGCGGCGGCGCTGCTCATCCCGTCGCTCGTCTACCTCGACCTCCGCTTCAACGCCTTCTCCGGCGGGATCCCCGCCGAGGCCTTCGCCAAGAGCAGCCTCGACGCGCTCTTCCTCAACAACAACCAGTTCGACGGCGAGATCCCGGAGACGCTCTGGTCGTCTCCGGCGACGGTGATCACGCTCGCGAACAACCGCCTCACCGGCCCCGTCCCGTCGGCGTACGGCTACGGCGGCCGCGTCCGGGAGGTGCTGTTCCTCAACAACAAGCTCACCGGCTGCATTCCGGAGGAGCTCGGGTTCTTGCCCACCATCGAGGTGCTCGACCTGAGCTACAACTCGCTCTCCGGCCACCTCCCGCCCACGCTGTCCTGCCTCGCCGGCATCGAGGTGCTCAACATCGCGCACAACCAGTTCACCGGCGAGCTCCCGGACCTCGTCTGCGACCTCAAGCGGATCACCAACCTGTCCGTCTCCTTCAACTTCTTCTCCGGCATCAGCCAGCACTGCGACCGCCTCGCCGGCCGCAGCGTGTTCGACTTCGTCGGCAACTGCGTCCCCGGCCGCGGCCTGCAGCGCCCGCCGCCGGAGTGCGACGGCGGCCAGGGCGACGGCGGCCTCAGCTGCCTGCGCAGCATCCCCGTCACCCGCCCCGTCCCCTGCGCCCAGGCCTCCGTCTCCGTCGGCGTCGGCGTCGGCGTCGGCGTCATCGTCCGCGGCGCGATGCCGTCGTTCGGCGCCGGCGGCGTGGTCACGGTCACCGTGCCATGA
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| Protein seq | MTTDLLLLLLLLLLLLSSSRLALAAAFGVWINGAASSSPQSQEYEALQALKAAVVEDPRGALASWQGPNVCAYRGVYCSAPPDDAAASGAVVAGIDLNRANLRGTLPAAVSLLAHLTFLHLNSNRLAGQPPDSLRDLQYLTELDLSNNLFSGSFPAAALLIPSLVYLDLRFNAFSGGIPAEAFAKSSLDALFLNNNQFDGEIPETLWSSPATVITLANNRLTGPVPSAYGYGGRVREVLFLNNKLTGCIPEELGFLPTIEVLDLSYNSLSGHLPPTLSCLAGIEVLNIAHNQFTGELPDLVCDLKRITNLSVSFNFFSGISQHCDRLAGRSVFDFVGNCVPGRGLQRPPPECDGGQGDGGLSCLRSIPVTRPVPCAQASVSVGVGVGVGVIVRGAMPSFGAGGVVTVTVP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 3.278119 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0188700 | RBH | 0.0 | 0.0 | 2.271523 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g09640 | RBH | 0.0 | 0.0 | 0.718562 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0188700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0005980 | RBH | 0.0 | 0.0 | 2.364657 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0006040 | RBH | 0.083468 | 0.0 | 0.237593 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0005920 | RBH | 0.0 | 0.0 | 0.390168 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0005980 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0006060 | RBH | 0.0 | 0.0 | 2.044529 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0083600 | RBH | 1.022833 | 0.150418 | 0.796982 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0005880 | RBH | 0.0 | 0.131366 | 0.298468 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0145600 | SBH | 1.727006 | 46.4663545 | 0.021656 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0005970 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0005910 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0005990 | RBH | 1.533596 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0006060 | RBH | 0.0 | 0.0 | 0.150366 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0006030 | RBH | 0.0 | 2.717181 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0006030 | RBH | 0.618409 | 0.0 | 0.605375 |
