Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_04G023850 | OGI:04087680 | 15/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr04:28834190-28838722 | ||||||||
| Gene Symbol | CDPK13, OsCDPK13, OsCPK13, OsCDPK7, CDPK7, OsCPK13-1, OsCPK13-2 | ||||||||||
| DNA seq | CTATCTACTCATCAACCGCACACGAAAGAACAAGGGCCGCCAAGTTGCAGTTAGCTAGCTGTTGCGCTCGCTTTCCCCCAAACGTGACCCGGCCGGGAGGGAGAAGTCGCCATGAAGCAGCCTCCCGCTGCTGCTTTCTCTCTCTCGCCTCGTTAAAATCTCTCTTCCACCCCGAACCCCATCCAGTTCAGTTCCCTCTCGATCGCTTCCCGTGCTCTCGCTCTCTCGCTTGCTAGATCAGAGATTCCCCTCTGCGGCGGTTGTGAGGTTTCCGCTTCGGCTCGCTAGCTAGCTCTGCTGTTTCTGTGAGAGCCGGGAGCACCAACCGCGCGTGGGGTGGGTGCCCGGAGGTTTGATGCGCGTGGCCGCCGGTTTCTCCCCGTCGTTTGATGGGCAACGCATGCGGCGGTTCCCTTAGATCCAAGTACCTGAGCTTCAAGCAGACCGCGTCGCAGCGCCACGACACCGACGACAACAACAACGCCGCCGCGGCCGACTCGCCGAAGAAGCCCTCCCGCCCTCCAGCAGCCGCCAAGACGGACGACCACCCAGTCTCCGCGTCGGCGCCGGCCGCCGCCATGAGGCGCGGCCAGGCGCCCGCCGACCTCGGCTCGGTGCTCGGCCACCCCACCCCCAACCTCCGCGACCTCTACGCCATGGGCAGGAAGCTCGGGCAGGGGCAGTTCGGCACCACCTACCTCTGCACCGAGCTGTCCACTGGGGTGGACTACGCCTGCAAGTCCATTTCCAAGCGCAAGCTCATCACCAAGGAGGACATCGAAGACGTTCGCCGCGAGATCCAGATCATGCACCATCTCTCGGGCCACAAGAACGTCGTCGCCATCAAGGGCGCCTACGAGGACCAGCTATACGTGCACATCGTCATGGAGCTCTGCGCCGGCGGCGAGCTCTTCGATCGCATCATACAGCGCGGCCACTACAGCGAGCGGAAGGCCGCCGAGCTCACGCGGATCATCGTTGGGGTCGTCGAGGCCTGCCACTCGCTCGGGGTCATGCACCGGGACCTCAAGCCAGAAAACTTCCTGCTTGCCAACAAGGACGATGACCTCTCGCTCAAGGCCATAGATTTTGGTCTCTCAGTCTTCTTCAAGCCCGGTAAGCTACTTATGCAGAACACAAAGGCTTTAAACTGTGTTTTAATCCACTATTCCGATGCAAAATTGGTGTTGCGATTCGCAAATATTGTAGCGTCACATTAGAGTTAACATGCATCGGTTAATCCATTGTCTGAAGAAAAAAAAATGGAGGCAACATGCAACTGCAATTCTCAGTTTCTGAATAATTAGTTGGGCATATAGTGGAACATTCAAGGGTAGCACTACAGCAGTGGGAACATTGTTAATGAGTTCATTGCATCCTGCAAGGTCTGAAATACACGTTCGTTGGGGAGCAGCTGAATGGCAGAGTAAACTGATGGAAGCTAGTTCACTGGGAGGATTTCTGAGTTAAATGTAGTGGAAAACGATGGAAGCTGAACGACATCTTGTTCTAATAAACATCTGTAATGCTGTATTCTGTATTGTGGGGAATTTGATGTTTCCATAAGCTAAATTAGGTTACTGTAGGCATATTTATATGAGCTTGTGCCTCCTTTTATTCTTCGTCTTCTTTTCCATCTCAGGTCAAACTTTTACCGATGTTGTCGGAAGCCCATATTACGTAGCTCCAGAAGTGTTGTTGAAACACTATGGACCAGAAGCTGATGTATGGACTGCAGGTGTCATTCTCTACATTTTACTAAGTGGTGTACCCCCATTCTGGGCAGGTAAATTTTGATTTCCCCCTTCAATTAACCTGGGAAGCTTGTTTTCTGATGATTGTAGCTTGACATTTTTCGTATGTATACAATGCAGAGACACAACAAGGAATATTTGATGCTGTACTAAAAGGTTTCATTGATTTTGATTCTGATCCTTGGCCTGTGATCTCTGAGAGCGCAAAGGATCTTATAACAAAAATGCTCAATCCTCGCCCAAAGGAACGCTTAACAGCACATGAAGTTCTATGTATGTTTCTTTTACTATATTTTTTTTGACAAAATTCTTTTACTATGTTGTACTCGTGGTCTTATTTTTCTCTCTAATGCCTATCCAATCACTTGACACATTTGCAACTGCCGGGAGAAAATGTAACACTTCAACTCTTGCTCAGGCCATCCATGGATTCGTGATCACGGAGTTGCTCCAGATCGGCCTCTTGATCCAGCTGTCCTATCTCGCATCAAGCAGTTCTCTGCAATGAATAAGTTGAAGAAGATGGCTTTGCGGGTACGCATGATAACTTTAAGCTTAAGTTTTAAATTACCAGCTTTGTGATACATTGGCTTTTTTTTTCTCTACAATAGACTGTTTATTTTGCTCTATGATAAGCTTTTCGCCTAATCTTTCAACTTGAACTGAATGCATAGAAGGTGACCTTTTCACTGCCAGCTGTTGACAAGTTTTTGTAGTGACTTTTATTCACTAAAAAATAGTACTATACTCAAAGTGGTTTCTTTTGGGGGCAATACTATGTCTTTTTGTTGTTTCTGTTGAACGGTCACCCACCCACCATATTTATTAAATGTGACCGGATTTGTTATAACACTAGGGAGGTATGATGGTTTGATCATTTCTTTTCAGTCTCCCCTTAATACTAGGGAGCTATTGAAGCAAACCATGTTGAATTTTGGAACCTGTACTGTTGGTGAAGCATAATTAGTGGGTTTTGCATTTATGAACAATTTGTGTTTATCCTACCAGGTAATAGCTGAGAGTCTCTCAGAGGAGGAAATCGCTGGGTTGAAGGAAATGTTTCAGACTATGGATGCTGATAACAGTGGTGCGATCACATATGATGAGCTTAAAGAAGGCTTGAGAAAATATGGCTCAACACTTAAGGACACCGAGATTCGTGATCTTATGGATGCAGTAAGTTAACTTCAACCTATTTGAATGCTGCTTTCGATTTCTTCTGTGTTAGTGACTTATATTTTGAAGATACTTAAGGACCTTGAACTTAAAGTTACCTTAAAACATTCTGAATAAAATGCCTTTTGGTGTCATATTACTTATAAGTCGGTCGAGACTTGAGAAACTCTTGGTTAAAAAAAGAAAGATATGAGAAACTCAAGCTGCTTCCTGCCTCACAAGATTACTTGACTTCATGGAGAAGCTTGAGCGCTTAAGAGAGAAGTCATTACCCATACATTTTCCTTTTTGTTGGCTGTTTTCTTTAGAGTATCTATGATTAGAAAACATGCAGCAGGCAGATCTTGCCTTCTTAAATTTCTTTGTAGGCTGATAACTTCAGCCTCATGATTGTCTTTCTACTGCAAACATTTCAAAAACAGGTTAACATGGTAAATCAAGAAGCTTACATTGTCCCTTTTGTTCTGTTGTTTCATCAGGCAGATATAGACAACAGCGGAACAATTGATTATATCGAATTCATTGCTGCAACATTGCATCTCAATAAACTGGAGCGAGAGGAACATCTTGTGGCAGCTTTTTCATATTTTGACAAAGATGGAAGTGGTTACATCACAGTGGATGAACTGCAGCAAGCTTGCAAAGAGCATAACATGCCCGATGCTTTTCTTGATGATGTCATCAATGAAGCTGATCAGGACAATGTAAGTATAGTGTTGATACCTCCTGATGTGCTATATAACTATGTTATATATTATTCTGGTATAGCTGGGATGTGTACAAAAATGAATGTGCAAGCAGCGGATGCAATAAAGTTTGTTCAATTAGTTAAGACAATTAAAGGCTTTGCATTGGATTGTTTAGTATTGAGGTGGAAAACCAACCATAGTACCTGAACTACCTAGGTCTTGAAACTCTTTCAATCCATTATTGGGATCACATATGCTCTAGTAGGTGGTTAGCTGTCCAGTCATGTGCTTTACTTAACAAAGGCCTAGGGACTTCTCTTCAATAACCAGCAGAATTCATTTTGTTACTTCATTAATGAATGTTTATGGTTATGTTAGTAGCAAAAAGAAGTTAGTGCCATGACTTGTTTGCCTAATGTTGCTCCCTTTTGTCAGGATGGGCGCATTGACTATGGAGAATTTGTTGCCATGATGACCAAGGGCAATATGGGAGTCGGACGAAGAACAATGAGAAACAGCTTGAATATCAGCATGAGGGACGCACCTGGTGCACTCTAGACTTCCACGATGTACAGCTTACGGATTTTAGCTTCTTCCTGTCTTCCTGCCCAACGAACTCCTGCGATTTTTTAGCGTTGTCAGATGTCCGCGGATGTGTTTTTCTGGTGGTTCTGATTTAACTTGTCAATTGATTCCATGGAATGCATAACAAGATGTCCATGCCACGCTCAAACGAAGCTGGGTTGTAAATCTCTCGTACGCCATTGCTCAACTCTGAAGGTGTTCGGTGAACTAGCTCGTATTCTTTGTGTTGCAATGGATGAACTTATACTGGCTGTGTTGGGTGTAATTGCATTGCCAACATTTACAGGGGCATGTGAGATCCCGCTTTATCCACCGAGTATTCTTTGCGC
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| CDS seq | ATGGGCAACGCATGCGGCGGTTCCCTTAGATCCAAGTACCTGAGCTTCAAGCAGACCGCGTCGCAGCGCCACGACACCGACGACAACAACAACGCCGCCGCGGCCGACTCGCCGAAGAAGCCCTCCCGCCCTCCAGCAGCCGCCAAGACGGACGACCACCCAGTCTCCGCGTCGGCGCCGGCCGCCGCCATGAGGCGCGGCCAGGCGCCCGCCGACCTCGGCTCGGTGCTCGGCCACCCCACCCCCAACCTCCGCGACCTCTACGCCATGGGCAGGAAGCTCGGGCAGGGGCAGTTCGGCACCACCTACCTCTGCACCGAGCTGTCCACTGGGGTGGACTACGCCTGCAAGTCCATTTCCAAGCGCAAGCTCATCACCAAGGAGGACATCGAAGACGTTCGCCGCGAGATCCAGATCATGCACCATCTCTCGGGCCACAAGAACGTCGTCGCCATCAAGGGCGCCTACGAGGACCAGCTATACGTGCACATCGTCATGGAGCTCTGCGCCGGCGGCGAGCTCTTCGATCGCATCATACAGCGCGGCCACTACAGCGAGCGGAAGGCCGCCGAGCTCACGCGGATCATCGTTGGGGTCGTCGAGGCCTGCCACTCGCTCGGGGTCATGCACCGGGACCTCAAGCCAGAAAACTTCCTGCTTGCCAACAAGGACGATGACCTCTCGCTCAAGGCCATAGATTTTGGTCTCTCAGTCTTCTTCAAGCCCGGTCAAACTTTTACCGATGTTGTCGGAAGCCCATATTACGTAGCTCCAGAAGTGTTGTTGAAACACTATGGACCAGAAGCTGATGTATGGACTGCAGGTGTCATTCTCTACATTTTACTAAGTGGTGTACCCCCATTCTGGGCAGGCCATCCATGGATTCGTGATCACGGAGTTGCTCCAGATCGGCCTCTTGATCCAGCTGTCCTATCTCGCATCAAGCAGTTCTCTGCAATGAATAAGTTGAAGAAGATGGCTTTGCGGGTAATAGCTGAGAGTCTCTCAGAGGAGGAAATCGCTGGGTTGAAGGAAATGTTTCAGACTATGGATGCTGATAACAGTGGTGCGATCACATATGATGAGCTTAAAGAAGGCTTGAGAAAATATGGCTCAACACTTAAGGACACCGAGATTCGTGATCTTATGGATGCAGTAAGTTAA
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| Protein seq | MGNACGGSLRSKYLSFKQTASQRHDTDDNNNAAAADSPKKPSRPPAAAKTDDHPVSASAPAAAMRRGQAPADLGSVLGHPTPNLRDLYAMGRKLGQGQFGTTYLCTELSTGVDYACKSISKRKLITKEDIEDVRREIQIMHHLSGHKNVVAIKGAYEDQLYVHIVMELCAGGELFDRIIQRGHYSERKAAELTRIIVGVVEACHSLGVMHRDLKPENFLLANKDDDLSLKAIDFGLSVFFKPGQTFTDVVGSPYYVAPEVLLKHYGPEADVWTAGVILYILLSGVPPFWAGHPWIRDHGVAPDRPLDPAVLSRIKQFSAMNKLKKMALRVIAESLSEEEIAGLKEMFQTMDADNSGAITYDELKEGLRKYGSTLKDTEIRDLMDAVS |
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| Function | Calcium-dependent protein kinase 13 [UniProtKB/Swiss-Prot:Q9FXQ3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_04G023850 | OsN22_04G023850_01 | Chr04 | 28834190 | 28837284 | + | NAM | ||
| CDS seq | ATGGGCAACGCATGCGGCGGTTCCCTTAGATCCAAGTACCTGAGCTTCAAGCAGACCGCGTCGCAGCGCCACGACACCGACGACAACAACAACGCCGCCGCGGCCGACTCGCCGAAGAAGCCCTCCCGCCCTCCAGCAGCCGCCAAGACGGACGACCACCCAGTCTCCGCGTCGGCGCCGGCCGCCGCCATGAGGCGCGGCCAGGCGCCCGCCGACCTCGGCTCGGTGCTCGGCCACCCCACCCCCAACCTCCGCGACCTCTACGCCATGGGCAGGAAGCTCGGGCAGGGGCAGTTCGGCACCACCTACCTCTGCACCGAGCTGTCCACTGGGGTGGACTACGCCTGCAAGTCCATTTCCAAGCGCAAGCTCATCACCAAGGAGGACATCGAAGACGTTCGCCGCGAGATCCAGATCATGCACCATCTCTCGGGCCACAAGAACGTCGTCGCCATCAAGGGCGCCTACGAGGACCAGCTATACGTGCACATCGTCATGGAGCTCTGCGCCGGCGGCGAGCTCTTCGATCGCATCATACAGCGCGGCCACTACAGCGAGCGGAAGGCCGCCGAGCTCACGCGGATCATCGTTGGGGTCGTCGAGGCCTGCCACTCGCTCGGGGTCATGCACCGGGACCTCAAGCCAGAAAACTTCCTGCTTGCCAACAAGGACGATGACCTCTCGCTCAAGGCCATAGATTTTGGTCTCTCAGTCTTCTTCAAGCCCGGTCAAACTTTTACCGATGTTGTCGGAAGCCCATATTACGTAGCTCCAGAAGTGTTGTTGAAACACTATGGACCAGAAGCTGATGTATGGACTGCAGGTGTCATTCTCTACATTTTACTAAGTGGTGTACCCCCATTCTGGGCAGGCCATCCATGGATTCGTGATCACGGAGTTGCTCCAGATCGGCCTCTTGATCCAGCTGTCCTATCTCGCATCAAGCAGTTCTCTGCAATGAATAAGTTGAAGAAGATGGCTTTGCGGGTAATAGCTGAGAGTCTCTCAGAGGAGGAAATCGCTGGGTTGAAGGAAATGTTTCAGACTATGGATGCTGATAACAGTGGTGCGATCACATATGATGAGCTTAAAGAAGGCTTGAGAAAATATGGCTCAACACTTAAGGACACCGAGATTCGTGATCTTATGGATGCAGTAAGTTAA
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| Protein seq | MGNACGGSLRSKYLSFKQTASQRHDTDDNNNAAAADSPKKPSRPPAAAKTDDHPVSASAPAAAMRRGQAPADLGSVLGHPTPNLRDLYAMGRKLGQGQFGTTYLCTELSTGVDYACKSISKRKLITKEDIEDVRREIQIMHHLSGHKNVVAIKGAYEDQLYVHIVMELCAGGELFDRIIQRGHYSERKAAELTRIIVGVVEACHSLGVMHRDLKPENFLLANKDDDLSLKAIDFGLSVFFKPGQTFTDVVGSPYYVAPEVLLKHYGPEADVWTAGVILYILLSGVPPFWAGHPWIRDHGVAPDRPLDPAVLSRIKQFSAMNKLKKMALRVIAESLSEEEIAGLKEMFQTMDADNSGAITYDELKEGLRKYGSTLKDTEIRDLMDAVS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_04G023850 | OsN22_04G023850_02 | Chr04 | 28834374 | 28838722 | + | IsoSeq | ||
| CDS seq | ATGGAAGTGGTTACATCACAGTGGATGAACTGCAGCAAGCTTGCAAAGAGCATAACATGCCCGATGCTTTTCTTGATGATGTCATCAATGAAGCTGATCAGGACAATGATGGGCGCATTGACTATGGAGAATTTGTTG |
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| Protein seq | MEVVTSQWMNCSKLAKSITCPMLFLMMSSMKLIRTMMGALTMENLL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr04 | 28835975 | 28836362 | + | OsN22_04G023850_02 | OsN22_04G023850_02,OsN22_04G023850_01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.224199 | 16.644188 | 9.748708 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0584600 | RBH | 4.430853 | 4.315581 | 11.930920 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g49510 | RBH | 2.462099 | 2.376908 | 2.113385 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0584600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0024410 | RBH | 1.512859 | 54.589802 | 14.353505 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0025160 | RBH | 1.053450 | 11.756464 | 7.739491 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0024850 | RBH | 3.582193 | 38.918640 | 20.835135 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0024630 | RBH | 0.546838 | 1.638297 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0024820 | RBH | 9.348074 | 36.774651 | 32.735687 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0466000 | RBH | 7.398646 | 73.605156 | 35.027727 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0023590 | RBH | 0.463972 | 3.053327 | 3.352939 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0469200 | RBH | 13.249561 | 63.639576 | 9.398285 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0024070 | RBH | 0.351405 | 0.991981 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0023870 | RBH | 1.155787 | 47.070873 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0024000 | RBH | 1.377619 | 85.420448 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0024400 | RBH | 1.954911 | 5.214590 | 3.203456 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0024600 | RBH | 0.949053 | 21.741905 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G029330 | RBH | 0.034660 | 3.174417 | 0.912582 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0023750 | RBH | 0.421087 | 59.044380 | 23.668667 |
