Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_04G023560 | OGI:04086970 | 16/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr04:28611405-28617344 | ||||||||
| Gene Symbol | MADS17, OsMADS17, NMADS3, RMADS213, nmads3 | ||||||||||
| DNA seq | TAGATCATATCTCATCCCATCATCGGTCATATTCTCCTCAGCTTCATGTTGCTGAGCTATAGGCGAATGGTTGACAAGAGTACTAGTTAGCTTAATAATATAGCTTTGCAAAAGTTGAGGTAATGGATCGATCAGAGATGGGGAGGGGAAGGGTTGAGCTGAAGCGCATCGAGAACAAGATCAACCGGCAGGTCACCTTCTCCAAGCGCCGCAACGGCCTCCTCAAGAAGGCGTACGAGCTCTCCGTGCTCTGCGACGCGGAGGTGGCGCTCATCATCTTCTCCAGCCGTGGCAAGCTGTACGAATTCGGTAGCGCCGGGTAAGCGTGTGCATGATCCGTTCAGTACCCTAATCGTATGTGATTCTTGCAGATCTGGTGATTAATTTCTCTCTTCCCTTTGGTTTGTTTTGTTTCCTTCCATGGGATGCGTATTCTCGTTTGCTTCCTCAGCTTAAATCCGAAATTGTTTCTTAGATTTTTTGTTACCAAGTATATATATGTGCTCGCTGGTTTATTTTGCTATATGGTTTTTTGTTTCTCGCTAGCGTGCATGTGTTTTCATACATCTTTTAGGCTTAGGTAATCTTGCCGGATGTATGCCTAGCTCTTGCTACTTGCATACTTGGGTAATCTTTTCATAATGAAAATCCTCCAGCCCTAACTCAATAAAGCACATAATATCTCTTCTTCTTCTTCTTCTTCAGAACCTAAAGAGCATTGATTTCTTTCATTCGTGCGTGTGCCCGGCGTGCGCATGTCAGGAGCAGCTAGGTATATGAGGCTCTGAGGCGCAAGTTTTCTGATTGCAAGAGTGACTTGAAGGGGAAAGTGATGGGGTCTGCTGTTTCCATTTAGATGCCGCACCAAGAACTTTGTTTAAATCTTTTTTTTCAGAATTATTGCCTAATTTGATATCCATATATTTCATTCCTGCAAGTATATAACATCTTCTCTTGCCATCTCTCAGGTAAATTATATTACATATGAACCATGCATATGCCTCTCTTTTCTTTTGATGCATTTGTGTTTTCCTGAAAGGTTCGTGTTCCCGTTTAAATAAAGCTTTCAGATTTTTTTCCTGATAGGTACATGAGTTTTTTTTTCATTTATTTGATTAAACCCTCAAACATTATCATCACTTTAGCTGCATATATATGAATTCGATCTTTCAAATCTCTTATGTGTATACGCTCTTTTGCAAGATTTTGTGATTCTGGTATTATTATTTTTTTGTTGTTGCATTGCCTCTTGCTAATACATGAAGGTAACCGAGAGGGGCTTATGCACATTTTGAGTTGAATGTTAGTAATTGCTATATGTATTGACGGGAAAATCATAAATATATATAGACGAAAAATAACTGTGTTGATTGAAATGCATGGATCGAATTGAACACCGTTTAGTTGTGGAAATTCTTTTATTTCTTCTCCGTGATCAGTGTGTAGGGCTTCTCTCCATGACCATCATATCATTCTTTCCATGAAAAAAATTTTAATAAAGTAAATACATTAGGAAAGAGTTTTGTGTTATTGTGACCGGCAACTCTTTTTCTAACTTTCTCTTAACCTTTTATCACATGAATATGTGTTTTTCTTTTTTTCATCATAGTTTATTTTGCAACATTTACTTTTGAGTCGCCAAGAACACACATATAAAGCTTTACTTAGAAATATTCTTTTTATTTGCTAATAAGTGATTCGGATAAGCATATGAATAAGCGAAACAATGAGGCTTTGTGTCCGAATTAGAGCATCATTAAACAATTTCTGAAAACAATTTCTTCAGTAGCGATGATCGAAAGGGATTCGTTGAACTCTAACAATTATTAAAATTGTTCTTGACCACAAATTCACCTGGCCATATGATTATCATTACCTATTTTCTGCAATTAAATTTATGTATTTTCATTCTGTTATATTAGTCTCCTGCTGTTTAAAATTACATATCATTCTACCTTGTCCTAATTTATGTCAAACATTTCTATCCTTGACAGTCAATTTCTAGAAATTTGTATAAGTTAACAACATGCGAATTATATATTACAAAAGTATTTCTCATGATGAATCTAAAAACATAAATCTTATGATATTAAACTATATGAAATTTTAAATTTTGATGGCAAAACGTACAAATGTTTAACTTAGAACAAAACTAGAATGCAAGTAATTTCAAATGCAGGGCGAAGAGTAGATTTTATTGCATTCGGCTTTATGTATGTGAGTAAGTAACATATCCTAAACCTATTTTTGTTTGCAGAATAAACAAGACATTGGAAAAGTACAATAGTTGCTGTTACAACGCTCAAGGTTCAAATAGTGCTCTTGCTGGTGGTGAACATCAGGTATTCATAGAATAGTTGTCAAACACACTTCGGTAACCATATTATGTAGAATCCTTTAAAGTTCAAATATACATATCTAGACCTCTTTGCCAGTAATATTGTCTCAAATTCTTGAGATGCAAGGAGGATCAATGAAGAGATATATAGTACTTAAATATTGCTGATTTTAATTTGAAGATTGCAATCAAATTCTAATATATGTACTAGTTCAGTGAATAAGATATTAGTACTTACATTTTCTAAACCTAATGATAATATCGCTTTTTTCCTTGATGCAATAAAAATTAAACATTCAGATTCATATAAAATAAAATTCAAGGGTAAATAAGAACAAAAATAAATGCTTACTATTTTGGATTTTATCAATTATTGGTTTTAGTTTTTTTTCCCATTTGACCCATAGAGCTGGTACCAAGAGATGTCAAGGCTCAAGACTAAGCTTGAATGTCTCCAACGCTCTCAGAGGTACTGCACTGCATCAGCTGTTTCAGGAACACTTGAAATGCTTCACCACTTGAATGTTTGGGTGTTATATTTGCATATACAACAGGCACATGCTTGGTGAAGATCTTGGACCATTGAGCATAAAGGAACTGCAGCAGCTGGAGAAGCAACTTGAGTACTCACTGTCACAGGCTCGACAACGAAAGGTTATATCACCACACAATAAAATAAGTGTAGTTCCTTCAATTACCTTGTTAATTAACATACAATAATATCTGCTATTATCTAGTACAATACTGTATGCATTATTCTATATATACAACCTATATCTTGACAAATAAAAGGGATATATACTGCAAATATATCCATCTGATGAATTGTAAGAAATTAACCACTTAAGCCGTAAATGGTGCTAAAAAAGACAACGCAGCCGTAATATATATAAGCAACAAATATTGCATGAGTGTACGTACTTGATCAACAAATTTTACGGCGATCTCTGCTGGTAGTAGGATCAATATCTGGACCTTTCATCTTTACCTATCCAATATATATTTATATTACTAACTTAACCATTGGTAGTAGAATATTTTGTCTATAGGTAGTAAAATTCATAAATCAACTGTATATAATTTCTACTGATAATAAAATAATATCAATAAATATCACAATTAATAAAAGTACTTGATTGAGCACCAAGTTTATTTCTATAATAAAAAGACACCATAAGTTTTCTATAATTGCTTTTGCTTCCTTCCAACTTCGGGGGGACATGGTTTATATGCTCCTATGCCCTGAAATACTAAATATGTCAGAAGAAGAAGACAACAAAGTACAGGGCTTAACTTGCATGCTCGTCCATATAAAAGTTATCTAAATTTTAGTTGAGTTCTTTGTATTTATTTCAGACACAAATCATGATGGAGCAGGTCGACGATCTTCGCCGGAAGGTATTGGAATATCTGTCAAATGTTGTCGCTTTTCTATAAATCTGTAACATCGTAATTAATCATATGATCAAGATTACTAAACCATATATTTGTATGATATGATAGCTTATCAGATCTAGATAATTAATCCTGAAGGTTGTGGACGTATTGCTTTATAATTCAATACTTGTTGCTTCAGATATGGGGAATTTCAAGTGCACCACAGAGTTCGAGGACATCAAACATTATGCTGCCATTTTTTCAGAATCTTTCCTAAATATTTATATATGCTTTGGTTATTACTAGGGTATTCCGTGAGGAACTATATATTCTCTCCTTTAGATGAGAATGTATTTGTTCCTGATTTTACTCAATCGTAAAAAAAAAAAGGTTTATACCTAGGAAAATAAATGTAACACCTTATAATACAGATGCCCATCTGAGTCGCTGCGTCCGTACCTACATTTCATACGGCTTTAATGTTTATGCGTTAATTTTTCAAGTTGCAATATGGCCACCAACTATTAATTAAAAAGGGATTTATTTTGTCAATTATCAGAACGAATTATTGAATCTTATCAAGAATGAATTAATTACATACCAATATTATCTATCATGTCACAAAATCATTATGATCACAAGGAGCTGTTTGCAAGACTTTTAGGGTTAATTCTTTTTTTCTTGCTATGGCTAGGGGTGATAGCTGATTAAGGTCCATGGATTTTTTTACATCCGTATCTAGCATTTGTATATTTTTAGATCCAGTCTTCAAATTTTATAGACTAAAAACTTGGGCCAATTAGCACCCTAGCTGTGGCTCATATGTTGCTGCATATACTCTCTTTATATATATATATGTGTTTGATGGTATTTACTTTTAAACATAACCATTCATATTATTGAAAGAACCGTGCAAATATATAGAAATATAAGTCATGTCTAAAGTACAAACAAAATGGAATAGAAGGATGAATGGTCAAATTTATGTTAAAAAGTCAATGGCATTAGACAAAAAAGAAATAAAGGGAGTATACATCTACCTATCTAGCTGGAACTCCAAGTTCTATTGTCTGGAAATTGGAATAGGCTAGCTCTTGCTGACCTGTTTAACTGGCTTTGGTGGGGTGCTGGTGTTCCATATGTAATGGGGATGACATTACACCAAAATCGCTCAGCCTTTCTGCTTAATTTGCTTAGTAGGAGTAGTGTAGTACTCCTGAACTTGAACCCTGTAGCATGTCGTTTCTGATAATAGAAGCGGGACAGAGTGTTATGTTTTTCTATCGAAAAAATAAAATATAGTTAATCACATCTAATAATCCTGCCTCAAAAGTGCTAGTTGTATATTCCCTAGTTGACTGATTATCTGGGCTGCCTGCAGGAACGCCAGCTTGGAGAGCTCAATAAGCAACTGAAAAACAAGGTCCTACTTATCGTTTCCACAATTAATTTCTGCCTTTCAATTTGGTGGATTGGGAATACTGTACAACCACTTCTCTGTTTTCTAGTGTTAATTAGTGTATCTTCGAATTTTGTCATGTCATTTCGCCATGTAGTACTAACACATCGCCACACCATTCAGCTAGAAGCTGAAGCCGATAGCAGCAACTGCAGATCAGCCATCCAGGATTCCTGGGTCCATGGCACCGTCGTCAGTGGCGGCAGAGTGCTGAATGCTCAACCACCACCAGATATTGACTGTGAGCCTACTCTGCAAATTGGGTAAGTTTGGAAGATGAATCAAAACTAAAACCTGATCAATCTGATCTTCCGAACCAACGTGTTTGAAAATATGCATGCACGCTACAGGTACTATCAATTTGTCCGTCCTGAGGCGGCCAATCCAAGAAGCAATGGAGGAGGAGGGGATCAGAACAACAACTTTGTGATGGGATGGCCCCTCTGAAGTCCAAGCTTGCTAATAAAAACGCTGGCGTGCTATAATATATAGTTCGGCAAATGTTGAAACACATGTGTTCTCAGTATGTATATTTCTCCCCTATCCGGTGGTACTCTTAGCACGTACCTATGAGTGTATGTTTGTACGTTATCTATACTCTATGCTAGGCAACCCTATACTATTATGGTAAGACGTCTATCTTTTCAATCTATCTATACGTACCATACTAATTGGCAAATTTTGTGTAGCTACCGGATTAAGTGTGCTACCTACTGTAAAGATCCCAAGAGTTTTGCATGAATATATTTGGCTAGAGCGATCATTT
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| CDS seq | ATGGGGAGGGGAAGGGTTGAGCTGAAGCGCATCGAGAACAAGATCAACCGGCAGGTCACCTTCTCCAAGCGCCGCAACGGCCTCCTCAAGAAGGCGTACGAGCTCTCCGTGCTCTGCGACGCGGAGGTGGCGCTCATCATCTTCTCCAGCCGTGGCAAGCTGTACGAATTCGGTAGCGCCGGAATAAACAAGACATTGGAAAAGTACAATAGTTGCTGTTACAACGCTCAAGGTTCAAATAGTGCTCTTGCTGGTGGTGAACATCAGAGCTGGTACCAAGAGATGTCAAGGCTCAAGACTAAGCTTGAATGTCTCCAACGCTCTCAGAGGCACATGCTTGGTGAAGATCTTGGACCATTGAGCATAAAGGAACTGCAGCAGCTGGAGAAGCAACTTGAGTACTCACTGTCACAGGCTCGACAACGAAAGACACAAATCATGATGGAGCAGGTCGACGATCTTCGCCGGAAGGAACGCCAGCTTGGAGAGCTCAATAAGCAACTGAAAAACAAGCTAGAAGCTGAAGCCGATAGCAGCAACTGCAGATCAGCCATCCAGGATTCCTGGGTCCATGGCACCGTCGTCAGTGGCGGCAGAGTGCTGAATGCTCAACCACCACCAGATATTGACTGTGAGCCTACTCTGCAAATTGGGTACTATCAATTTGTCCGTCCTGAGGCGGCCAATCCAAGAAGCAATGGAGGAGGAGGGGATCAGAACAACAACTTTGTGATGGGATGGCCCCTCTGA
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| Protein seq | MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLKNKLEAEADSSNCRSAIQDSWVHGTVVSGGRVLNAQPPPDIDCEPTLQIGYYQFVRPEAANPRSNGGGGDQNNNFVMGWPL |
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| Function | MADS-box transcription factor 17 [UniProtKB/Swiss-Prot:Q7XUN2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_04G023560 | OsN22_04G023560_01 | Chr04 | 28611405 | 28617344 | + | NAM | ||
| CDS seq | ATGGGGAGGGGAAGGGTTGAGCTGAAGCGCATCGAGAACAAGATCAACCGGCAGGTCACCTTCTCCAAGCGCCGCAACGGCCTCCTCAAGAAGGCGTACGAGCTCTCCGTGCTCTGCGACGCGGAGGTGGCGCTCATCATCTTCTCCAGCCGTGGCAAGCTGTACGAATTCGGTAGCGCCGGAATAAACAAGACATTGGAAAAGTACAATAGTTGCTGTTACAACGCTCAAGGTTCAAATAGTGCTCTTGCTGGTGGTGAACATCAGAGCTGGTACCAAGAGATGTCAAGGCTCAAGACTAAGCTTGAATGTCTCCAACGCTCTCAGAGGCACATGCTTGGTGAAGATCTTGGACCATTGAGCATAAAGGAACTGCAGCAGCTGGAGAAGCAACTTGAGTACTCACTGTCACAGGCTCGACAACGAAAGACACAAATCATGATGGAGCAGGTCGACGATCTTCGCCGGAAGGAACGCCAGCTTGGAGAGCTCAATAAGCAACTGAAAAACAAGCTAGAAGCTGAAGCCGATAGCAGCAACTGCAGATCAGCCATCCAGGATTCCTGGGTCCATGGCACCGTCGTCAGTGGCGGCAGAGTGCTGAATGCTCAACCACCACCAGATATTGACTGTGAGCCTACTCTGCAAATTGGGTACTATCAATTTGTCCGTCCTGAGGCGGCCAATCCAAGAAGCAATGGAGGAGGAGGGGATCAGAACAACAACTTTGTGATGGGATGGCCCCTCTGA
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| Protein seq | MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGINKTLEKYNSCCYNAQGSNSALAGGEHQSWYQEMSRLKTKLECLQRSQRHMLGEDLGPLSIKELQQLEKQLEYSLSQARQRKTQIMMEQVDDLRRKERQLGELNKQLKNKLEAEADSSNCRSAIQDSWVHGTVVSGGRVLNAQPPPDIDCEPTLQIGYYQFVRPEAANPRSNGGGGDQNNNFVMGWPL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 3.203420 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0580700 | RBH | 0.0 | 0.0 | 15.848146 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g49150 | RBH | 0.0 | 0.0 | 3.693338 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0580700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0024130 | RBH | 0.0 | 0.0 | 10.147564 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0024870 | RBH | 0.0 | 0.0 | 2.705621 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0024570 | RBH | 0.0 | 0.0 | 14.197659 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0024350 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0024480 | RBH | 0.0 | 0.0 | 40.043377 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0462000 | RBH | 0.0866995 | 0.058936 | 16.1441965 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0023300 | RBH | 0.0 | 0.0 | 1.727589 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0465900 | RBH | 0.104151 | 0.075241 | 25.804351 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0023770 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0023600 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0023730 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0024120 | RBH | 0.0 | 0.0 | 1.337539 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0024330 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G029120 | RBH | 0.0 | 0.0 | 12.481837 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0023480 | RBH | 0.0 | 0.0 | 7.325583 |
