Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_03G035870 | OGI:03089890 | 16/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr03:34703842-34707323 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGAAATCAACAGAACTATGCATTCTTCTTGCTCAAATTAGAGCATGGATTTTTGAAAGTATATAGTAAAATACCACTATCAAAATAAACAGCGAAATGATTAAAAAAGAGGTGGTGCCTCTGAATGTGCCTGAATATACTTGTCAAGAACTTCGCCAGCCAGAGAAATTATACTAACAAGCTGTAAAGAACAATTAAAACGTGCTCCCTTCTCCTCCAGCTGCTTCTGTGCCTCTCCAGTATCACCTTTCTCGCGTGTTTGGGGAGCACAGCATAATCGCTGCACGATAACATGAAATCCTTCAGGCTTGACCTTCCGAAACTGTTTTTGAGCTGCCAGGAGTAGAACTGCTGACTGTACAAGCTTGCCATCCTTCATGTAATTCCATAGCTCATCAACAAGATTATCTGTTTTTTCGGCAAGCAGTCTAGTTGTATCCAAGAAAATCTTCTGCAAAACAAAAAGGCCGCCAAGGAACAAAATTAGATTGCCTTTATCAAGCAGCACTGAATAACTTCCTATATTACATCACCTAGTTTCTTCTAATTACAAGGCATGAATTAGGACCAATCTTCAAGCCAAATAAAATTTACTTAGCTAATACTCCCCATATCGTAACATCACATTGTTTGGAACTGAAGATGTTATTTTTTCTATAAAATGATCCAACATAAACAACATCAAATTAGTTCAATTAAAATCCACTATGAAATATGTCTTGATAGTTTATTTATTTTGTATTGAAGATGTTAATTATTTTTCTATAAATTTGGTCAAAGTTAAAGAACTTTGACTAAGGACAAAACTAAAACACCTTACTTGCAACTGAGGAAGTAGAATTTCAGGATAAATGACTGCTAAATTTGAAATAAAAACAGGCTGCACCACATATGAAAAATTCAAAAAGGTATACATATTTAAAATGCCATTCTGCACACGTTTTGTGTAGAGAGGAAAGTGAAACAAATCATCTCAGGTAAGCACAGCAGATGAATGAGCTTGTATACATAATCCTCATTATACTGGGTAGGAGATAGATTATCCTCCAGATACTTATGCATGCAAGTATTCTCAACTGCAATATGGAGTGGGAGAAGGTCCTCAGTGCCAGCATTACCAACTGTGCGTACATTAGCTGAAGCACCATGGCGGAAGAGCAACTTGATCATGTCAACAAAGAACCGTTCAGCAGCTTCATGGAGTGCAAAACATCCATATGGATTAATGCAATTGGGATTAGCATGCATATAATTGAGCTCAGGTGCCTTGCCCTCCAATACAACTTGGCGCACATCGCAGGGCGTTATGCCTGACCATGTAGGTCAAGGTTTCAGAGGTAATGGTAAAATCCCATGCCAATATCCAAGAGTTTGCAAACAAGCGGCGGAAGCACCGGGTACTATCCTTTTTCAGGATGTGTTCCAAGTAGGGAGTTAAACAATAGAAGTTATTTTGCACCCACTAGATCGATCCATTGACAAATGAAAAAGAAGGCCAGTTATTTTTCCAGTTGATAAAGCAGAACATAATAAACAAGCTTCACTGGCATGCGCTTTATAATTAAGTAACAGAACACTTAGCTTCAACATGGACTACTTAGATACACCAAAATGCTGCAGGTTAGAAAGAAATAACTAATATAACAGAATGATCTGTCAACTGAATTCTGTAAGTGAAATAGAAACAAAACCTGAGGAGTAGGATCTGTCATGATATCGTTCTTTACGTTCTTGGCGGCCCAAACAGATTTAATTTTTACCCACTGGAAGAGAGTATGTCAAATGCCAGTTCATAAGGGAAGAAAACAGAAGCCAAGAGGAGGATCACAGAGATGGGTAGCCAACATACCTCATCCATCTTTTTCTGATCGAATTTCTCAAGGTATAGAAAAGGACGGGAAGGATCCATATTATCCACAGTTGCTCCTTCTTCTTTAAGTCTAGCATTATCTCCGCACACCACCTCGTGTTTCTCCATTTGAGAAGAACTGGTCTGAAGACTTCCCGTAGTTTGTTTGTCTGAAACAAGGAACAAGGAGATTTATTTATAAAATGGAATACATTAAAACATACAACAATTTTCTATTGCTACTAATATATTGTAAGACTCATAAATGGTTGAACGATGATCCTGTTGGCCACGAAGACAAAATGGAGTATTTCTAAATGGATTACTCCCTTGGATTAAAAAATATATGATGCTTAGGACATTGACATGATCTACAAGGTAAAATTTTGACTAGCAAATTCTATGAAAATATGGTCTTTCAAATAAAATGGTTAAACTATGAAAGTAATTTTCATGATGAATCTAGTAATAGCTATCTTACATTGCCAATCTCTAATTTTTATATACTGATGACCAGGGTTAAAATGGCTTGACCAGTAGGAATCCTAAAACAAAATATACTTTGAATTGGAGGAAGCATGCATCGCTGAAACATAAAATATATATTACGCTGCAAAAGAAAATATTGAATTTCCATCACACATCTGGATAAGGTAAAATGTGATATTAAGGGGCAAAAGGAAGTTCACACATACTAGTTGTACGGGAATGCTAAAACCTATGCATGTACAAAGTAAAAGCAAAAAAGTGATAGCTGAACATGTGATTCCTGCCAGACTTTACTAATGGTTACTGATGCCCGTCAACAACTTATTCTTTCTGATCCTGGACTATGAGAGATTTCGATGCTTTACATCAAAGGGAGGTAGGGAAAAATAAAAACATTACTGGTCCTATACACAGCTAGAGTACACATTTCGACGTCCTGCTGTGGAGATAAAACACTATAGACTGAAAACAGGGGTGCGACAATTACTTAGGCTGTGTTGCATATGCCGGTTCCCAGCCCAAAACAGTACGCACGGAAAACGGAACAATCCATTAGCACGTGATTAATTAAGTATTTGCTATTTATTTCACAAATCGATCAATATAATTTTTTAAACAACTCTCGTATAGAAACTTTTTGCAAAAAACGCACCGTTTTAACAGTTTGAAAAGCGTGCGCGCGGAAAACAAAGCAAGGGAGGTTGGGAACTTGGAGATCCGAACAAACCCTTAAGGTCGGTATCAGTCGAAATATTAGATTTTGATATGAAGAATAGCTCCCGGTCGGAGGAATATGACCAGAAGCCACAGATCCCACCTTTAAATAGCAACAAACAGGGGTTCCGGATCTCGCCTTAGAAAGATACATCGCGGTTCACAAGTACTAATTTTCAAGGAAAAAATAAAGAGGGCAATGACTCCTTACAGCCTCCCATGGTGAGGGGGGGGGAGAAATAGCTGATTAACAGAAAAATCACATACTGTTTCCTTACCTCCGTCATGTTCTGACATGAATCTTCTAAATATGAAAGGGTGAAGTTTTTTTTTCACGAAACAATAGAGAAAGATCTGGATGAAACTGGAGCTGAGAGGGGTGGAAGGGGGTCGGCGGCGTCGGAACTCGGAAAGGGCGCTGCTAGGGTTTC
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| CDS seq | ATGTCAGAACATGACGGAGACAAACAAACTACGGGAAGTCTTCAGACCAGTTCTTCTCAAATGGAGAAACACGAGGTGGTGTGCGGAGATAATGCTAGACTTAAAGAAGAAGGAGCAACTGTGGATAATATGGATCCTTCCCGTCCTTTTCTATACCTTGAGAAATTCGATCAGAAAAAGATGGATGAGTGGGTAAAAATTAAATCTGTTTGGGCCGCCAAGAACGTAAAGAACGATATCATGACAGATCCTACTCCTCAGAAGATTTTCTTGGATACAACTAGACTGCTTGCCGAAAAAACAGATAATCTTGTTGATGAGCTATGGAATTACATGAAGGATGGCAAGCTTGTACAGTCAGCAGTTCTACTCCTGGCAGCTCAAAAACAGTTTCGGAAGGTCAAGCCTGAAGGATTTCATGTTATCGTGCAGCGATTATGCTGTGCTCCCCAAACACGCGAGAAAGGTGATACTGGAGAGGCACAGAAGCAGCTGGAGGAGAAGGGAGCACGTTTTAATTGTTCTTTACAGCTTGTTAGTATAATTTCTCTGGCTGGCGAAGTTCTTGACAAGTATATTCAGGCACATTCAGAGGCACCACCTCTTTTTTAA
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| Protein seq | MSEHDGDKQTTGSLQTSSSQMEKHEVVCGDNARLKEEGATVDNMDPSRPFLYLEKFDQKKMDEWVKIKSVWAAKNVKNDIMTDPTPQKIFLDTTRLLAEKTDNLVDELWNYMKDGKLVQSAVLLLAAQKQFRKVKPEGFHVIVQRLCCAPQTREKGDTGEAQKQLEEKGARFNCSLQLVSIISLAGEVLDKYIQAHSEAPPLF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_03G035870 | OsN22_03G035870_01 | Chr03 | 34703843 | 34707323 | - | NAM | ||
| CDS seq | ATGTCAGAACATGACGGAGACAAACAAACTACGGGAAGTCTTCAGACCAGTTCTTCTCAAATGGAGAAACACGAGGTGGTGTGCGGAGATAATGCTAGACTTAAAGAAGAAGGAGCAACTGTGGATAATATGGATCCTTCCCGTCCTTTTCTATACCTTGAGAAATTCGATCAGAAAAAGATGGATGAGTGGGTAAAAATTAAATCTGTTTGGGCCGCCAAGAACGTAAAGAACGATATCATGACAGATCCTACTCCTCAGAAGATTTTCTTGGATACAACTAGACTGCTTGCCGAAAAAACAGATAATCTTGTTGATGAGCTATGGAATTACATGAAGGATGGCAAGCTTGTACAGTCAGCAGTTCTACTCCTGGCAGCTCAAAAACAGTTTCGGAAGGTCAAGCCTGAAGGATTTCATGTTATCGTGCAGCGATTATGCTGTGCTCCCCAAACACGCGAGAAAGGTGATACTGGAGAGGCACAGAAGCAGCTGGAGGAGAAGGGAGCACGTTTTAATTGTTCTTTACAGCTTGTTAGTATAATTTCTCTGGCTGGCGAAGTTCTTGACAAGTATATTCAGGCACATTCAGAGGCACCACCTCTTTTTTAA
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| Protein seq | MSEHDGDKQTTGSLQTSSSQMEKHEVVCGDNARLKEEGATVDNMDPSRPFLYLEKFDQKKMDEWVKIKSVWAAKNVKNDIMTDPTPQKIFLDTTRLLAEKTDNLVDELWNYMKDGKLVQSAVLLLAAQKQFRKVKPEGFHVIVQRLCCAPQTREKGDTGEAQKQLEEKGARFNCSLQLVSIISLAGEVLDKYIQAHSEAPPLF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_03G035870 | OsN22_03G035870_02 | Chr03 | 34703842 | 34707314 | - | IsoSeq | ||
| CDS seq | AGCGCCCTTTCCGAGTTCCGACGCCGCCGACCCCCTTCCACCCCTCTCAGCTCCAGTTTCATCCAGATCTTTCTCTATTGTTTCGTGAAAAAAAAACTTCACCCTTTCATATTTAGAAGATTCATGTCAGAACATGACGGAGACAAACAAACTACGGGAAGTCTTCAGACCAGTTCTTCTCAAATGGAGAAACACGAGGTGGTGTGCGGAGATAATGCTAGACTTAAAGAAGAAGGAGCAACTGTGGATAATATGGATCCTTCCCGTCCTTTTCTATACCTTGAGAAATTCGATCAGAAAAAGATGGATGAGTGGGTAAAAATTAAATCTGTTTGGGCCGCCAAGAACGTAAAGAACGATATCATGACAGATCCTACTCCTCAGGTTTTGTTTCTATTTCACTTACAGAATTCAGTTGACAGATCATTCTGTTATATTAGTTATTTCTTTCTAACCTGCAGCATTTTGGTGTATCTAAGTAGTCCA
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| Protein seq | SALSEFRRRRPPSTPLSSSFIQIFLYCFVKKKLHPFIFRRFMSEHDGDKQTTGSLQTSSSQMEKHEVVCGDNARLKEEGATVDNMDPSRPFLYLEKFDQKKMDEWVKIKSVWAAKNVKNDIMTDPTPQVLFLFHLQNSVDRSFCYISYFFLTCSILVYLSSP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.373127 | 9.775942 | 6.731888 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g56360 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0036520 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0036190 | RBH | 0.000000 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0036270 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0036560 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0036080 | RBH | 10.237444 | 35.893997 | 24.722088 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0547500 | RBH | 1.9786365 | 5.0891425 | 5.643848 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0035880 | RBH | 0.409608 | 0.342063 | 1.216077 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0548300 | RBH | 3.4619355 | 8.1808405 | 22.540204 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0036370 | RBH | 0.494539 | 0.275403 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0036380 | RBH | 0.487892 | 8.451514 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0036030 | RBH | 7.622349 | 30.920053 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0036120 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0036080 | RBH | 0.385266 | 3.773671 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0035650 | RBH | 1.108762 | 30.967611 | 21.754436 |
