Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_03G016950 | OGI:03034080 | 16/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr03:13158537-13163353 | ||||||||
| Gene Symbol | SRP32, Os-SR32, OsSR32, SR32, OsSRp32, Os-SRp32 | ||||||||||
| DNA seq | GTCGTCGCCGCCGTGTGCTCTCCCATCTTTTCCCAGTCTCCGCGACCTCGAGCGGTCATAAACCCTCCTCTCCTCCCCCTCTCCCCTCCCCTTCCCCGTGCGACCCGCCCAACCCAAACCCTAGGTCACCCAGCGCCGCGGCGCCCCCGGTACGAATCCCTCCTCCTCCTCCTCCCTCTCTCGATTCGCGCCTCGCGTCGTCGTGCTACCGCGCCCCGGTTCCCCGCCCCACCTCCGAACCTAGCTGCGGGCGGTGGTGCGGGGAGATTTTTTTTTTCTTTTTTGGGGGGGGGGGTCGATTTGCTATTTCTTTTTCTTTTTTTTTTTGGTTTTTTGCGGCGCGCTGTTTGCAGGGTCTGATCAGTGGTGGTTGGTTCTTGGTTGTTTATAGGTTGCTGACTTGCCGCGGGAAGGAGGATGAGCAGGCGGTGGAGCCGGACGATCTACGTGGGGAATCTCCCTGGTGACATCAGGGAGAGGGAGGTGGAGGATCTCTTCTACAAGGTCGGTGATTTGTTTTTTTCTCTCTTTTGTGTAGATAGTGTTAGCAGAAATTGTCAAGCTATTTTTTATGCCACATGTTACTCCGTATATGCTTAGATTCAGTTTTCCATAATTTAGCTAACTGGATTCGATCGACTTATATATATTACTATAAAAGAGAACTGATAAGTCCTGTACATAAGTTAATGGGAAATAAGTAAGGCATGGCTGTGCCGAAAGAAAACGGAAAAAAAAATGATAATCTTGTTTGAGAAAGCTGATGGGTAAATTTACTTATTTGGAAAAGTTGGTTTACCGCTGATATCCGGCATCTCGAGTCAACATATGTGCTTGAGGGTGTGTTTACAATTGATTTGTCGGGCATGATTCAATGTCCCGGGGTCTAATACTTTTTTACATTGTTTCATATAGTATGGCCGAATTGTTGATATTGACTTGAAGATCCCTCCGAGGCCACCAGGCTATGCTTTTGTAGAGGTAACATACTCCCAGATGTTTCACATAATGTTTATTTGGTCTTGGAATGAGACCTTCCTGTTGTTACATACTTAAGGTGCCGCATGCTAATATATTTGTGCCCTAACTTTTTAGTTTGAAGATCCTCGTGATGCTGAAGAAGCATGTGCTGGCAGGGATGGTTATAACTTTGATGGACATCGTCTAAGGGTAATGACACTAGAATAAATAAGTTACTTCTTGATGTCCTTTGTTTTTGATTTATCTGTATAATGACCGCAACCATCTGCAGGTTGAACCTGCTCACGGTGGGAGAGGTAATGGTGGTTCCTCCTTTGACCGCCCCAGCAACTTTGGTGGTGGAGGACGCCGTGGTGTGTCCAGGCACTCAGAATACCGTGGTATGACTCTCATCTATGTCCAAATTGATGTTTAATGCTCAATTCTATTCTACTCCGTGATGTTTTTAATGATTTATGCACTTCACACAGTTCTGGTTACTGGTTTGCCTTCTTCTGCATCATGGCAAGATTTAAAGGTTTGTTGCAAGCACATTTCCTTTTCAATGTAAAATTAAAACGACTTATTCCCTTGGACAACCAGTAACATTTTCTTATGAACATTTGCTTCTCAGGACCATATGCGCAAGGCTGGTGATGTTTGTTTCTCAGAAGTGTATCGCGAGGGCGGCGGTAATACACATATTTTGTGCCCACAGCTATAAGTTTTTATTTAGCTTCTGTAGTATCCATCGTACATAATAGACACTCCTACTCACCCCCTCCTCTCCTTGTCCTGATTCATAGCTCAAGGGAGCTATACTTTGGGACAGAGGGTGTATTTGTTGAACATATTGTTCAGGTTTATACCATAAGTAAATACACTCAGTTGGTCATTTCTATGACGAAATTAACAGCTCCAACTCTCCCAACCCATAACATACACGTGGTCATACCAATATTCTCAAGATTATCTCCGAAGCAGGATAATTTAGGTCCATTCTGAAAGAATTTTTATATACAGGAAAACACATTTGAAATTCATTTTTCTTTTGTTTCCTATGTCATCATGGTTATTCTTTATCAAGTATTACAAACTACTCTCTTTCCATAGTTTTCCTATCTACCTCAAATATTCTACCAAAAAAACATACCTGGTTGTTATCTCTTTGTAATGCCCCCCCCCCCCTCTAATAGTGGTCAATTGCCCTCTTTGTTTGTGCTTAAGGTGGGGGCCTACCGGCCCAGCAATCCCTGCTGTGCTGGGTCTCTCTTTGCTCTGTTTATCACAGTTGTAGTTCTAGGGTTTTAGCTGTTGGTTGGTATGCCAATATGCCATTGTAGTCCTCTGAATATATGCATTGTACAACTATCTGAAGCAATAATTCTTCTATATGGTTATTGAGGTAGAGACTTATGTTTTCATTTTGTTGCAGGTACTGTAGGGATTGTGGACTACACAAACTATGATGACATGAAATATGCTGTAAGCTTATATGTTAATACCTTTTATTACATTCTTTAGCTTGTGTGAAATATTTCATCTGAGAACTTTCTTTCTCTGTAATCTGTATGGTTTATGACACTCTATTTTGTATTTTTATGGCAGTCGGTTACTTTTGTATCTAGCATTCTAGTTCAGTCCTAGCATTGTGATCCTGATAGTTTAAATGTTCTCTTGGTTGCTGATCATTATTTGCAGATAAAGAAACTTGATGACAGTGAATTCAGGAATGCCTTTTCTAAAGGTCACATAAGGGTAAACTGTTCTTTCCTCTCTCTTTTTTTATGGTTGAGCCCTGGAATCAGTTTCTCTGGCTAACCATGTACTTCTTATCATAGGTGAAGGAATATGATGGCAAGCGCGCCCGCTCCTATTCACGTAGCCGAAGCCCAAGTCGTAGCCGAAGCAAAAGCAGGAGTCTAAGGTCTTTTTATCATATTTTGATCTCTGTGGGTAAAACTGTTGATGACTTAACTCATTTTGAATATGCTGTGCAGTAAATCTCCTAGAACTCGCCGTTCAGCATCCCGATCTCGATCTCGATCAAGGTCTGTTTCTTCCCGTTCACGGTCAGCATCAAAAGGGCGCTCTCCATCAAGGTAACACGCATCTGTCGTCTATCTAATTATATTTTTAATTCTTAAGTCAAACTCTTTATAGTATCCTCTTCTGGGGCACATCATGTCCTCCAAAGAAGGGAAAAAAGGGCAGATCACAGCATGATCTGATATGCGCACATACCATAACCATTTCCTATCATGCTCCCATATTACCAAATAAGTCTTGTGCATTAATTTGTTAATTTGAAAACAGTGACCAGCATTTGTTCCCCTAACAATATCTCTGTGCTCTGCATTATCTATGCCTGAGGCATTGGTTGTTGACCGTTCCATACTGCATGTGGCATCTGATTAGTGTCTGGCTCTTTTTTGGTATATGATAAGTAATTACTTGGCATCATTAGTTAAATTCACTAACTTATCTGTGTTTCCAAACTTACCTAATAATAATTGTCGATTTGCTATACTAGTATTTATTTCCTTGGGAATTTCCTTCTCAAGTACAGCTTCTATTATAAACTATATGAACTGCTTAGCCTCATTTGTTTTGTGAAGACCCGATTATCTCTTCATTTTATCTGGGATTGTGCGGCGATCTGGGGATTGCGCATTAGGATATTGAGGATGGGATTTCCTCAATTTGCTCTTGGTTGTATGAGGTATGCCCATTTATTGAGAGCTTCTATGGAAAGCTAAAATGATCCAATTATTTGACCTAATGCACTGTAACTGATTGCCATCAGAGATTGGGCATAGCGCATTGTTTGGAATTCTGGACATAGGAGCATTAAGGATTGACGATATTTGGATAATGATGGTACAATGACTAGGAATGTGCTTGGCGTTCAATGCTTGAGGAATGAGTTCTCTCCCTACCTTTGGCATGCTATATATGGTGGTTGCGTCTTGCATGCATTATTTGCATTCAATACTACATATTTTTGGACTTAATTATGTGCTCTTAATCTCTTGTTTTCATTGGGCTATTTTCACTTTCATTTTGTCGGTGCAATGCTGGACAAAGCATCAAGGTTTTTGGAATAAGCTGTTAGACCCGCATTTTGGATATTGAATATGGTTGCTTCTCGACTTCTTTTTTGCAGATCACCAGCAAGATCCAAATCTCCAAATGCTTCTGTAAGTTCCCTTCATACTATTAAAAATTTCCTTTTTCTTTCACTTCCGTTTGTTTTACTTAACGTGTTGTTTCCTAAATATACTTCCCCCAGCCTGCAAATGGTGAAGCATCAAGCCCCAAGAAACGGAGCCCAAGCAGGAGCCCATCTCGTTCACGGTCTCCTGATGTATGCATTCGTCCCCCATGTTTCCTTGACTTCCAAACATTGCATGGTTGATTGTTGTGCTTACACTAATTTAATTATGTTTCCAGGCGAAATCTGAATAGAAGTGATATGCTGATGTGAGCAGTGACACGGACTTCTCATGTACGGCTATTTGCTGTCCTTGATGACCGATTACATCCGATTCTTAGCTGTGGTGCAATGAGGCTCCATTAAATTTGATACTATGAATTTGTAGTAATGAAAACATCAAACTATGCACTTCATGTGGTCTTCTGTGGCTGGTCTTGTTCCCTTGGGTTTTTGGTAGTTCGCCGAATGCTACTATCTGGATTATTTTTACTCAAAACATATGTCGGATGCTTATTGATTTCCATGTCAGTTATTTCTTGGCACCCCCATGTTGTGTTGCTCATCAATTCATGGAAAGCTTCTGCTGCTTGTTGAGCAGCACTATGGTGCTTGTTACCCTAGCTTGCAATATGCTTACCAC
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| CDS seq | ATGAGCAGGCGGTGGAGCCGGACGATCTACGTGGGGAATCTCCCTGGTGACATCAGGGAGAGGGAGGTGGAGGATCTCTTCTACAAGTATGGCCGAATTGTTGATATTGACTTGAAGATCCCTCCGAGGCCACCAGGCTATGCTTTTGTAGAGTTTGAAGATCCTCGTGATGCTGAAGAAGCATGTGCTGGCAGGGATGGTTATAACTTTGATGGACATCGTCTAAGGGTTGAACCTGCTCACGGTGGGAGAGGTAATGGTGGTTCCTCCTTTGACCGCCCCAGCAACTTTGGTGGTGGAGGACGCCGTGGTGTGTCCAGGCACTCAGAATACCGTGTTCTGGTTACTGGTTTGCCTTCTTCTGCATCATGGCAAGATTTAAAGGACCATATGCGCAAGGCTGGTGATGTTTGTTTCTCAGAAGTGTATCGCGAGGGCGGCGGTACTGTAGGGATTGTGGACTACACAAACTATGATGACATGAAATATGCTGTGAAGGAATATGATGGCAAGCGCGCCCGCTCCTATTCACGTAGCCGAAGCCCAAGTCGTAGCCGAAGCAAAAGCAGGAGTCTAAGTAAATCTCCTAGAACTCGCCGTTCAGCATCCCGATCTCGATCTCGATCAAGGTCTGTTTCTTCCCGTTCACGGTCAGCATCAAAAGGGCGCTCTCCATCAAGATCACCAGCAAGATCCAAATCTCCAAATGCTTCTCCTGCAAATGGTGAAGCATCAAGCCCCAAGAAACGGAGCCCAAGCAGGAGCCCATCTCGTTCACGGTCTCCTGATGCGAAATCTGAATAG
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| Protein seq | MSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAEEACAGRDGYNFDGHRLRVEPAHGGRGNGGSSFDRPSNFGGGGRRGVSRHSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSEVYREGGGTVGIVDYTNYDDMKYAVKEYDGKRARSYSRSRSPSRSRSKSRSLSKSPRTRRSASRSRSRSRSVSSRSRSASKGRSPSRSPARSKSPNASPANGEASSPKKRSPSRSPSRSRSPDAKSE |
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| Function | Serine/arginine-rich splicing factor SR30 [UniProtKB/Swiss-Prot:Q9XFR5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_03G016950 | OsN22_03G016950_01 | Chr03 | 13158537 | 13163353 | + | NAM | ||
| CDS seq | ATGAGCAGGCGGTGGAGCCGGACGATCTACGTGGGGAATCTCCCTGGTGACATCAGGGAGAGGGAGGTGGAGGATCTCTTCTACAAGTATGGCCGAATTGTTGATATTGACTTGAAGATCCCTCCGAGGCCACCAGGCTATGCTTTTGTAGAGTTTGAAGATCCTCGTGATGCTGAAGAAGCATGTGCTGGCAGGGATGGTTATAACTTTGATGGACATCGTCTAAGGGTTGAACCTGCTCACGGTGGGAGAGGTAATGGTGGTTCCTCCTTTGACCGCCCCAGCAACTTTGGTGGTGGAGGACGCCGTGGTGTGTCCAGGCACTCAGAATACCGTGTTCTGGTTACTGGTTTGCCTTCTTCTGCATCATGGCAAGATTTAAAGGACCATATGCGCAAGGCTGGTGATGTTTGTTTCTCAGAAGTGTATCGCGAGGGCGGCGGTACTGTAGGGATTGTGGACTACACAAACTATGATGACATGAAATATGCTGTGAAGGAATATGATGGCAAGCGCGCCCGCTCCTATTCACGTAGCCGAAGCCCAAGTCGTAGCCGAAGCAAAAGCAGGAGTCTAAGTAAATCTCCTAGAACTCGCCGTTCAGCATCCCGATCTCGATCTCGATCAAGGTCTGTTTCTTCCCGTTCACGGTCAGCATCAAAAGGGCGCTCTCCATCAAGATCACCAGCAAGATCCAAATCTCCAAATGCTTCTCCTGCAAATGGTGAAGCATCAAGCCCCAAGAAACGGAGCCCAAGCAGGAGCCCATCTCGTTCACGGTCTCCTGATGCGAAATCTGAATAG
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| Protein seq | MSRRWSRTIYVGNLPGDIREREVEDLFYKYGRIVDIDLKIPPRPPGYAFVEFEDPRDAEEACAGRDGYNFDGHRLRVEPAHGGRGNGGSSFDRPSNFGGGGRRGVSRHSEYRVLVTGLPSSASWQDLKDHMRKAGDVCFSEVYREGGGTVGIVDYTNYDDMKYAVKEYDGKRARSYSRSRSPSRSRSKSRSLSKSPRTRRSASRSRSRSRSVSSRSRSASKGRSPSRSPARSKSPNASPANGEASSPKKRSPSRSPSRSRSPDAKSE
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_03G016950 | OsN22_03G016950_02 | Chr03 | 13158634 | 13163224 | + | IsoSeq | ||
| CDS seq | ATGACTAGGAATGTGCTTGGCGTTCAATGCTTGAGATCACCAGCAAGATCCAAATCTCCAAATGCTTCTCCTGCAAATGGTGAAGCATCAAGCCCCAAGAAACGGAGCCCAAGCAGGAGCCCATCTCGTTCACGGTCTCCTGATGCGAAATCT |
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| Protein seq | MTRNVLGVQCLRSPARSKSPNASPANGEASSPKKRSPSRSPSRSRSPDAKS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr03 | 13160981 | 13161338 | + | OsN22_03G016950_02 | OsN22_03G016950_02,OsN22_03G016950_01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.596229 | 12.062416 | 6.299234 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0344100 | RBH | 10.623050 | 8.492687 | 18.920408 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g22380 | RBH | 6.411488 | 5.175160 | 4.534068 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0344100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0017380 | RBH | 2.551517 | 43.129883 | 16.350304 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0017220 | RBH | 1.430890 | 6.281215 | 11.718726 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0017230 | RBH | 5.639644 | 27.162426 | 23.649830 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0017230 | RBH | 0.671254 | 1.436825 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0017020 | RBH | 9.591209 | 39.768829 | 42.797997 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0211700 | RBH | 25.332337 | 46.265581 | 46.464905 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0016870 | RBH | 1.491706 | 2.996744 | 4.633908 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0216100 | RBH | 22.4429865 | 59.5018135 | 62.454588 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0017120 | RBH | 0.994892 | 1.589851 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0017130 | RBH | 1.674466 | 28.215015 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0017200 | RBH | 14.277211 | 62.256931 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0017070 | RBH | 2.906793 | 3.077972 | 3.781565 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0016970 | RBH | 1.418268 | 20.579287 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G027190 | RBH | 1.513977 | 8.644881 | 5.325560 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0016930 | RBH | 5.738175 | 52.129642 | 27.461592 |
