Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_03G004420 | OGI:03008510 | 16/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr03:3207594-3211501 | ||||||||
| Gene Symbol | ACDR1, OsEDR1, OsACDR1, EDR1, OsMAPKKK1, MAPKKK1, SPL3, OsSPL3 | ||||||||||
| DNA seq | GTGGGTTTATGTGCTGTTTTTGCAGGGAGTTTTTGGTTGATCTCATGGCTGCTCCCGGTACTCTTATTCCATCAGATGTCTTAAGTTGGAAGGGCAACTCATTAAATTCTAATGCAAGACTCACCCAGAATCCATTGGCTGGGTCATCAAGTACAACTGATTCTAATCTCAGTGCCAATGCATTACCACCCGGACATAAAGGTGGCCAACTGCCTTTATTTAGCAGTGGCGATTGGATATTGGCCAGTCAATCTGGATATGAAAAAGATGGAGCCACCACATCTTCACAGGCCTCTTCAAGTGGCACAACATCTGTTGCTGCTGGAAGCGCTTTTGATAGTTCTTGGACATTAGTTTCTCATGGACAATCAGATGATCCATCAACCTCTGCTGGTATGTCAGCACAGCAGAAAGTTATACTTCCAGGTGGAGAACATCCATGGAATGAGAATATAAATGCGCGAAATGAGAATATAAAACTTGTTTCAGATTTACAAGGGAATTCAGAGTCCATCAACTTATTTGCCGACCTTAATCCTTTTGGGGGTAGGGAGCCCAAAAGGACTTCAGTGCCATTAAATGGGCCAGATAATAGAAATAATGAGTTGCAAAGACGCAGAGAGAATGTAGTCCCTAGCACACGAAGACCCCAGCAGCGATTAGTTATGAAAAACTGGTCTCCTTACAATGATGTTTCCAACAACAAGCAGTACAATTATGTTGAGGATTCATTTGCACGTAGAAATATTGGTGATAATGCCGCATCATCATCTCAGGTGGCACGGCCATCTGCAAAAAATACTAATCTTAATGTTGGAGTGCGCACTGATACACCATACATGGCAGCTCATAATTATGATAATAGTATGGCTGGTTCCTCTGCAATGAAGATGACTTCTACAGCTGGGATTGGGAAGGTTCCTGATAAGGTTCTGTACGGTGATTTGGACAAGGGCCTTACTAATTCTAGACTGGGGGATCAACCACCGATAGAAAGACATAAATGGGGCAATTCTGTAGAAGGAAGGATTCCAACAGGCACAGTTCACAATCAAGCAAAAGAACACAAGGAGAACTTCGATGGAAAGCAAGACAATAAGAAGTTACATCCTGATCCAAAGAAATCCCCACTTGACAGATTCATGGACACATCAATGCCATCAAGGAACCCTGAATCCGTTTCACCATCCTTTGCTAGGTCACACAAGCTAGACACCATGTTCGACGATGTGTCTGAATGTGAAATTCATTGGGAAGATCTTGTGATTGGTGAAAGGATTGGCTTAGGTATTTTTCCTCAACTAAGATTTTGACATGATCCTTGCTTCTCTATACATTAACAAGTTGAACCGACAAATCTTTAACAATTTGTCAAACTATATTATTATAGCTCAGCCATGTGTAAACTCATTGCACTATCTGATGCCAATTTGTTGCACAAACTTGAACCAACTTCTTCCTCCTCCCAACAGGTTCATATGGAGAGGTGTACCGTGCTGATTGGAATGGAACAGTAAGAAACTGTTTGCTTTTATTTCCATATTGTGCCATAGAAACATTCTTCCCAGAGGTTAAATTCTTTATTGTTTTGCTTCTGTCAAAAAACTTTTTTGTTTATTTGCAGGAAGTAGCTGTCAAGAAATTCTTGGATCAAGATTTCTATGGTGATGCTTTGGATGAATTCCGGAGTGAAGTAGGTGAAACTATATATATTTTATATATCTTAGAGCTTTACTGGCTATAGCGTGGATTCATTTATTTGTCATTTTTAATTGATTTTTGCTGCAATGTTTTGATTTGCCATATACTTTCTTTTTACAAGGTGCGGATTATGCGTCGACTGCGTCATCCAAATATTGTTCTCTTCATGGGTGCTGTTACTCGTCCTCCAAACTTATCTATTGTATCTGAGTATCTTCCAAGGTATAACAATTTTCTACTGTTGTTTGCTTGTGAAGATCTTTTGGTGTTTATGATAAAGTATCATGGTGTAGATAAACATAGAAAACATTCTATCTGGAAGGACCACAAAGAAAAGCTCTCTCAACAACTTAGCTTTAGAATGGAACATAACACTGGAGGTTCAACATGCTGTAGTTGAAATACCTGTCTTTAATGATTTACTTGTGCATGGGAGGTGGCATACTGGCATCTATCTATAGTAGTTATATTATAGTGCAACTCATGCTCTATAGTTATTGTACTGGTCATGTTCGACGAATTGATGGCTCACCCTTGACTACTCTCCTGTCCTTGGCAGGGGAAGCTTATATAAGATCCTTCACCGTCCTAATTGCCAAATTGACGAGAAGCGTAGAATTAAAATGGCCCTTGATGTGGTAAGTATTTTCTATATTTTCTTGGCATGTTTGTTTATTTTTGTATCTGCTTGAGAAAATGGTTGCTTTCTCTTAAAGGCCAAAGGAATGAATTGCCTCCATATTAGTGTACCAACAATTGTTCATCGGGATCTTAAATCACCAAACTTGCTGGTTGACAACAACTGGAATGTGAAGGTACTGTGCTCTTTTTACCTTTACATTCATTCAGTCATAAGTATTTATGAGCGTGCTGATCGATTGGCTCACCAATGATGTGAAATAGGTTTGTGATTTTGGACTTTCACGCTTGAAGCACAGTACATTCTTATCATCCAAATCCACTGCTGGAACTGTAAGTACTAAACCGGACCATAGTAGGATGAGTTCTCTCCTTCTTTGATCATCACTAAACATTTACTATTTCTGTTTTCGATATCTCACCAGCCGGAGTGGATGGCACCTGAGGTCTTGCGGAATGAACAATCAAATGAAAAGTAAGTTATTCCTCGATGGCTTTTGTTTCAATAACTATTAGCTTTTGCCCTAGCTTGTTCAATTTATTTTTTCATTCTGGGCATACCATTCAAAGTTGTTCAGCATTACAGAAGAAATTATGTTTATCTTCCAGTCTCTACTCGTAGAAATGGAACACCCATCTCCCTCACAAACCTTTCAGCTTTCCTTGTTTGATTGGTGTGGCAGTAATCTCACTCAGACATCACCTGAAATTTCTGCAGGTGCGATGTTTACAGCTTTGGTGTCATCTTGTGGGAATTAGCAACACTTAGGATGCCATGGAGTGGAATGAATCCAATGCAAGTTGTTGGGGCAGTCGGCTTCCAGGACAAGCGGCTCGATATTCCCAAGGAAATTGATCCTCTAGTTGCAAGGATCATATGGGAATGCTGGCAGAAGTGAGTGTTTAGAAACAAACCTATTTTATGTTGCATCAATAAAGTACTCTCTTCCAACTATCAATTGTGTTGCTAGATCCGAGCTAATATTTGGTTTTTAAACCTCAGGGATCCAAATTTGCGGCCCTCGTTTGCACAGTTAACCAGTGCTTTGAAGACTGTCCAAAGGCTAGTAACCCCTTCTCACCAGGAGTCCCAGAGCCCTCCTGTGCCTCAAGAAATATGGGTGAATTCTTCCACCCCTTGATGTTGAGGGGCATTCCACTCTCAAAATTGTGAGTAATTATTGATGATTGTTGCTGTTAAGTTTGTTCAAGTCTGCAAATGTGGGCGCACTGTAGATTCTAGCGCCCCTAATGGTAGACATCCCTGCTGCCGCGACAAAAGAACCCAGCAGTAGAGTATGTATAGAGACTATAGTCATCGACCAAAACGATGACCCGAAGAAGAAATCCAGTCTGTGGCATCTCATTTTTCATGTTCCCAGTTTGCCTTTGTAAAACCTTTTGGATTCGAGCCCTCTGGAAAGCAGTGAGAGCTCGTGGCGTTGGATTAAGAAGGATCTGTGTCTGACTGTGTTTACAAGTGGATTGGATAATTGTTGCTGCAGAACATGACATCTTGGAAGTTAAAAATGTTGTAATATGCAATTTTTTTAAACTTGCAATTCGAA
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| CDS seq | ATGTGCTGTTTTTGCAGGGAGTTTTTGGTTGATCTCATGGCTGCTCCCGGTACTCTTATTCCATCAGATGTCTTAAGTTGGAAGGGCAACTCATTAAATTCTAATGCAAGACTCACCCAGAATCCATTGGCTGGGTCATCAAGTACAACTGATTCTAATCTCAGTGCCAATGCATTACCACCCGGACATAAAGGTGGCCAACTGCCTTTATTTAGCAGTGGCGATTGGATATTGGCCAGTCAATCTGGATATGAAAAAGATGGAGCCACCACATCTTCACAGGCCTCTTCAAGTGGCACAACATCTGTTGCTGCTGGAAGCGCTTTTGATAGTTCTTGGACATTAGTTTCTCATGGACAATCAGATGATCCATCAACCTCTGCTGGTATGTCAGCACAGCAGAAAGTTATACTTCCAGGTGGAGAACATCCATGGAATGAGAATATAAATGCGCGAAATGAGAATATAAAACTTGTTTCAGATTTACAAGGGAATTCAGAGTCCATCAACTTATTTGCCGACCTTAATCCTTTTGGGGGTAGGGAGCCCAAAAGGACTTCAGTGCCATTAAATGGGCCAGATAATAGAAATAATGAGTTGCAAAGACGCAGAGAGAATGTAGTCCCTAGCACACGAAGACCCCAGCAGCGATTAGTTATGAAAAACTGGTCTCCTTACAATGATGTTTCCAACAACAAGCAGTACAATTATGTTGAGGATTCATTTGCACGTAGAAATATTGGTGATAATGCCGCATCATCATCTCAGGTGGCACGGCCATCTGCAAAAAATACTAATCTTAATGTTGGAGTGCGCACTGATACACCATACATGGCAGCTCATAATTATGATAATAGTATGGCTGGTTCCTCTGCAATGAAGATGACTTCTACAGCTGGGATTGGGAAGGTTCCTGATAAGGTTCTGTACGGTGATTTGGACAAGGGCCTTACTAATTCTAGACTGGGGGATCAACCACCGATAGAAAGACATAAATGGGGCAATTCTGTAGAAGGAAGGATTCCAACAGGCACAGTTCACAATCAAGCAAAAGAACACAAGGAGAACTTCGATGGAAAGCAAGACAATAAGAAGTTACATCCTGATCCAAAGAAATCCCCACTTGACAGATTCATGGACACATCAATGCCATCAAGGAACCCTGAATCCGTTTCACCATCCTTTGCTAGGTCACACAAGCTAGACACCATGTTCGACGATGTGTCTGAATGTGAAATTCATTGGGAAGATCTTGTGATTGGTGAAAGGATTGGCTTAGGTTCATATGGAGAGGTGTACCGTGCTGATTGGAATGGAACAGAAGTAGCTGTCAAGAAATTCTTGGATCAAGATTTCTATGGTGATGCTTTGGATGAATTCCGGAGTGAAGTGCGGATTATGCGTCGACTGCGTCATCCAAATATTGTTCTCTTCATGGGTGCTGTTACTCGTCCTCCAAACTTATCTATTGTATCTGAGTATCTTCCAAGGGGAAGCTTATATAAGATCCTTCACCGTCCTAATTGCCAAATTGACGAGAAGCGTAGAATTAAAATGGCCCTTGATGTGGCCAAAGGAATGAATTGCCTCCATATTAGTGTACCAACAATTGTTCATCGGGATCTTAAATCACCAAACTTGCTGGTTGACAACAACTGGAATGTGAAGGTTTGTGATTTTGGACTTTCACGCTTGAAGCACAGTACATTCTTATCATCCAAATCCACTGCTGGAACTCCGGAGTGGATGGCACCTGAGGTCTTGCGGAATGAACAATCAAATGAAAAGTGCGATGTTTACAGCTTTGGTGTCATCTTGTGGGAATTAGCAACACTTAGGATGCCATGGAGTGGAATGAATCCAATGCAAGTTGTTGGGGCAGTCGGCTTCCAGGACAAGCGGCTCGATATTCCCAAGGAAATTGATCCTCTAGTTGCAAGGATCATATGGGAATGCTGGCAGAAGGATCCAAATTTGCGGCCCTCGTTTGCACAGTTAACCAGTGCTTTGAAGACTGTCCAAAGGCTAGTAACCCCTTCTCACCAGGAGTCCCAGAGCCCTCCTGTGCCTCAAGAAATATGGGTGAATTCTTCCACCCCTTGA
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| Protein seq | MCCFCREFLVDLMAAPGTLIPSDVLSWKGNSLNSNARLTQNPLAGSSSTTDSNLSANALPPGHKGGQLPLFSSGDWILASQSGYEKDGATTSSQASSSGTTSVAAGSAFDSSWTLVSHGQSDDPSTSAGMSAQQKVILPGGEHPWNENINARNENIKLVSDLQGNSESINLFADLNPFGGREPKRTSVPLNGPDNRNNELQRRRENVVPSTRRPQQRLVMKNWSPYNDVSNNKQYNYVEDSFARRNIGDNAASSSQVARPSAKNTNLNVGVRTDTPYMAAHNYDNSMAGSSAMKMTSTAGIGKVPDKVLYGDLDKGLTNSRLGDQPPIERHKWGNSVEGRIPTGTVHNQAKEHKENFDGKQDNKKLHPDPKKSPLDRFMDTSMPSRNPESVSPSFARSHKLDTMFDDVSECEIHWEDLVIGERIGLGSYGEVYRADWNGTEVAVKKFLDQDFYGDALDEFRSEVRIMRRLRHPNIVLFMGAVTRPPNLSIVSEYLPRGSLYKILHRPNCQIDEKRRIKMALDVAKGMNCLHISVPTIVHRDLKSPNLLVDNNWNVKVCDFGLSRLKHSTFLSSKSTAGTPEWMAPEVLRNEQSNEKCDVYSFGVILWELATLRMPWSGMNPMQVVGAVGFQDKRLDIPKEIDPLVARIIWECWQKDPNLRPSFAQLTSALKTVQRLVTPSHQESQSPPVPQEIWVNSSTP |
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| Function | Serine/threonine-protein kinase EDR1 [UniProtKB/Swiss-Prot:Q9FPR3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_03G004420 | OsN22_03G004420_01 | Chr03 | 3207594 | 3211501 | + | NAM | ||
| CDS seq | ATGTGCTGTTTTTGCAGGGAGTTTTTGGTTGATCTCATGGCTGCTCCCGGTACTCTTATTCCATCAGATGTCTTAAGTTGGAAGGGCAACTCATTAAATTCTAATGCAAGACTCACCCAGAATCCATTGGCTGGGTCATCAAGTACAACTGATTCTAATCTCAGTGCCAATGCATTACCACCCGGACATAAAGGTGGCCAACTGCCTTTATTTAGCAGTGGCGATTGGATATTGGCCAGTCAATCTGGATATGAAAAAGATGGAGCCACCACATCTTCACAGGCCTCTTCAAGTGGCACAACATCTGTTGCTGCTGGAAGCGCTTTTGATAGTTCTTGGACATTAGTTTCTCATGGACAATCAGATGATCCATCAACCTCTGCTGGTATGTCAGCACAGCAGAAAGTTATACTTCCAGGTGGAGAACATCCATGGAATGAGAATATAAATGCGCGAAATGAGAATATAAAACTTGTTTCAGATTTACAAGGGAATTCAGAGTCCATCAACTTATTTGCCGACCTTAATCCTTTTGGGGGTAGGGAGCCCAAAAGGACTTCAGTGCCATTAAATGGGCCAGATAATAGAAATAATGAGTTGCAAAGACGCAGAGAGAATGTAGTCCCTAGCACACGAAGACCCCAGCAGCGATTAGTTATGAAAAACTGGTCTCCTTACAATGATGTTTCCAACAACAAGCAGTACAATTATGTTGAGGATTCATTTGCACGTAGAAATATTGGTGATAATGCCGCATCATCATCTCAGGTGGCACGGCCATCTGCAAAAAATACTAATCTTAATGTTGGAGTGCGCACTGATACACCATACATGGCAGCTCATAATTATGATAATAGTATGGCTGGTTCCTCTGCAATGAAGATGACTTCTACAGCTGGGATTGGGAAGGTTCCTGATAAGGTTCTGTACGGTGATTTGGACAAGGGCCTTACTAATTCTAGACTGGGGGATCAACCACCGATAGAAAGACATAAATGGGGCAATTCTGTAGAAGGAAGGATTCCAACAGGCACAGTTCACAATCAAGCAAAAGAACACAAGGAGAACTTCGATGGAAAGCAAGACAATAAGAAGTTACATCCTGATCCAAAGAAATCCCCACTTGACAGATTCATGGACACATCAATGCCATCAAGGAACCCTGAATCCGTTTCACCATCCTTTGCTAGGTCACACAAGCTAGACACCATGTTCGACGATGTGTCTGAATGTGAAATTCATTGGGAAGATCTTGTGATTGGTGAAAGGATTGGCTTAGGTTCATATGGAGAGGTGTACCGTGCTGATTGGAATGGAACAGAAGTAGCTGTCAAGAAATTCTTGGATCAAGATTTCTATGGTGATGCTTTGGATGAATTCCGGAGTGAAGTGCGGATTATGCGTCGACTGCGTCATCCAAATATTGTTCTCTTCATGGGTGCTGTTACTCGTCCTCCAAACTTATCTATTGTATCTGAGTATCTTCCAAGGGGAAGCTTATATAAGATCCTTCACCGTCCTAATTGCCAAATTGACGAGAAGCGTAGAATTAAAATGGCCCTTGATGTGGCCAAAGGAATGAATTGCCTCCATATTAGTGTACCAACAATTGTTCATCGGGATCTTAAATCACCAAACTTGCTGGTTGACAACAACTGGAATGTGAAGGTTTGTGATTTTGGACTTTCACGCTTGAAGCACAGTACATTCTTATCATCCAAATCCACTGCTGGAACTCCGGAGTGGATGGCACCTGAGGTCTTGCGGAATGAACAATCAAATGAAAAGTGCGATGTTTACAGCTTTGGTGTCATCTTGTGGGAATTAGCAACACTTAGGATGCCATGGAGTGGAATGAATCCAATGCAAGTTGTTGGGGCAGTCGGCTTCCAGGACAAGCGGCTCGATATTCCCAAGGAAATTGATCCTCTAGTTGCAAGGATCATATGGGAATGCTGGCAGAAGGATCCAAATTTGCGGCCCTCGTTTGCACAGTTAACCAGTGCTTTGAAGACTGTCCAAAGGCTAGTAACCCCTTCTCACCAGGAGTCCCAGAGCCCTCCTGTGCCTCAAGAAATATGGGTGAATTCTTCCACCCCTTGA
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| Protein seq | MCCFCREFLVDLMAAPGTLIPSDVLSWKGNSLNSNARLTQNPLAGSSSTTDSNLSANALPPGHKGGQLPLFSSGDWILASQSGYEKDGATTSSQASSSGTTSVAAGSAFDSSWTLVSHGQSDDPSTSAGMSAQQKVILPGGEHPWNENINARNENIKLVSDLQGNSESINLFADLNPFGGREPKRTSVPLNGPDNRNNELQRRRENVVPSTRRPQQRLVMKNWSPYNDVSNNKQYNYVEDSFARRNIGDNAASSSQVARPSAKNTNLNVGVRTDTPYMAAHNYDNSMAGSSAMKMTSTAGIGKVPDKVLYGDLDKGLTNSRLGDQPPIERHKWGNSVEGRIPTGTVHNQAKEHKENFDGKQDNKKLHPDPKKSPLDRFMDTSMPSRNPESVSPSFARSHKLDTMFDDVSECEIHWEDLVIGERIGLGSYGEVYRADWNGTEVAVKKFLDQDFYGDALDEFRSEVRIMRRLRHPNIVLFMGAVTRPPNLSIVSEYLPRGSLYKILHRPNCQIDEKRRIKMALDVAKGMNCLHISVPTIVHRDLKSPNLLVDNNWNVKVCDFGLSRLKHSTFLSSKSTAGTPEWMAPEVLRNEQSNEKCDVYSFGVILWELATLRMPWSGMNPMQVVGAVGFQDKRLDIPKEIDPLVARIIWECWQKDPNLRPSFAQLTSALKTVQRLVTPSHQESQSPPVPQEIWVNSSTP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.489978 | 4.997541 | 5.466861 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0160100 | RBH | 5.327981 | 6.815548 | 9.894333 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g06410 | RBH | 3.558560 | 4.522464 | 2.511459 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0160100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0004500 | RBH | 2.147064 | 45.958084 | 11.687453 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0004420 | RBH | 1.065464 | 7.561298 | 8.065224 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0004460 | RBH | 4.872579 | 32.228439 | 24.228937 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0004430 | RBH | 0.516980 | 1.050182 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0004470 | RBH | 16.295090 | 31.272278 | 28.885223 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0051400 | RBH | 15.165012 | 61.5400525 | 37.1773205 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0004360 | RBH | 1.334086 | 2.688608 | 2.947207 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0052000 | RBH | 30.609497 | 100.9243165 | 64.925827 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0004470 | RBH | 0.508214 | 0.719219 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0004440 | RBH | 1.937340 | 26.635813 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0004400 | RBH | 8.678082 | 44.558781 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0004460 | RBH | 2.324234 | 3.111474 | 3.188221 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0004450 | RBH | 1.444519 | 14.060811 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G011720 | RBH | 0.452614 | 2.778796 | 3.221243 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0004280 | RBH | 4.828476 | 40.038334 | 11.516891 |
