Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_02G034670 | OGI:02090850 | 16/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr02:33476878-33478666 | ||||||||
| Gene Symbol | SGL1 | ||||||||||
| DNA seq | TTCTTCAGAGGAGTTGTGCATGTTTTTGTTGCTTTATCCTGATGCTTTGAAACAATGCTCAGCATTCACTAAAGGATACGGATTGAATTTTGCATTGTTTTCTTCCTAGCCTCAAACAACTCTGCTCTGTGTTTCAGCAGTTTCAATAGAACTTGTAGAGCTTGTGAGTACCATATAGTACATCCACTATTGCTAGACGCCTTACCGAGATGACGACCTGTATTAGGGACAAAGTGACCACAAAATCCGCTAACTAAAGTGACTCAACAATAGTTAACAGTCCTATTGGCTTGTAAAGATGGAAAAGTTGAGCACCATTGCTTGCATCAATGCCCTACTTTCAGTTTAATTTAAAACCAAGATGATTTGATGTATGTTGAGAACCTTGAAAACGCTTTGCATAGAGCCGTGCATCTAGTGCAGCACTGCAGCGGACATGTCGGGAGAGTGAAGTATCGATTTGCTAGAAACAAAAAGGATCATGATTCAGGTGGATCCTTCCTCTGTTCTTCCTCTCGTTCTCTATCATACACACTCTCTTCTGTGGATCTTGTCCCTCTTTATGAAATCATACAGCAGAGCATGGAACAAGACAAAGGAGAGCACTGTTGATCCCCACAGGCCAGAAAGGCTCCATCACTATAGGCTATCCTCTCTTCACAGATCTGGCCATCTGGCAGACTAATGATTGCACCATAAAATTTTCGATCTACACAAGCGCTGCATTTTGTACAGGGTGGAGGGGGAAAAAAGAAACAAAAAAAGAAGAAGAAAGAGGAAGCAAAGACTGATATGGATCTAGTGGACAGCTAGCTAGAGAGACAGCACTTATGCAAGAAAAAAAATACACAATTGTTTGCTCTTCAGCACACACTGGCCATCTAGCACACAAGCAACCGAGCACAATCATCTACAAAAACTAGCCTTTGAGACAAGTACAATGCAAGAGGATGGTCACAATATGAGACAGAGACGAGAGTTCCATGTGTGTTTTGGCTGAGTCCCATATATGTCATCTCATTGCTCCTGCAGTGCATCAAAGGATCCTTAATGAGACAACCTATCATACATCCGTGTACTAATGAACTGTGTACCATGTGTGTGGCATGGTGGACTGCCGATCATGGCTCACTGACCTGCTTGGAATCGGCCACGTCGGTGACCATCTCGGTGTCGACGGTGGTGCTCTTCTTGGCGGTGCCATTGACGCCGCCGACGCAGAGAGGCTTCCGCAGGCCGAGCATCTCCTTCCACCGGCTGGATCCCTTGGCCGACGCCCTGTCGTCGCAGCGAAGCTCGTCGCGGAGCGTGGTGGGAGGCCGGCCGGAGGAGAAGCCGCCGTCCTTGAGGGGAAGGATCCTGCCCTTGGAGAAGAGCTGGTCGGCGGCCATCATGGGGTGGCTACCCACCGAGAACTCGAAGTTGATATCCTCCTCCTGGCACCGCAGGTTCATCGCCCGGTTCTGCACCGGCGGCGGTGGCTCGACGACAAAGTCGCTGGAGAAGGAGATGCGCGGGCCCAGCGCCGGCGGCTGGCCGCCCCCGAACGCCGCGCCGCCGTCCGGGTTGTACATGTTGATGCATGCCATTTTGACGCTCTGGTGGTGGTCGTGGCCTCTCCTCGCGCGCTTCTGCTCCCTCTCGTGCTCTCCCTTCTCCACTGTGAGCTCAATTCGCTTCGAGTTGCGAGGATGGAGGTGATGAGGCGTTTAAAAGGTGGTGGTGTGAGCAGGAAACGGGCTCGTTGTTGAATTGAATCAGAAACAGGTCACTGTTACGGCTCAAGGGT
More
|
||||||||||
| CDS seq | ATGGCATGCATCAACATGTACAACCCGGACGGCGGCGCGGCGTTCGGGGGCGGCCAGCCGCCGGCGCTGGGCCCGCGCATCTCCTTCTCCAGCGACTTTGTCGTCGAGCCACCGCCGCCGGTGCAGAACCGGGCGATGAACCTGCGGTGCCAGGAGGAGGATATCAACTTCGAGTTCTCGGTGGGTAGCCACCCCATGATGGCCGCCGACCAGCTCTTCTCCAAGGGCAGGATCCTTCCCCTCAAGGACGGCGGCTTCTCCTCCGGCCGGCCTCCCACCACGCTCCGCGACGAGCTTCGCTGCGACGACAGGGCGTCGGCCAAGGGATCCAGCCGGTGGAAGGAGATGCTCGGCCTGCGGAAGCCTCTCTGCGTCGGCGGCGTCAATGGCACCGCCAAGAAGAGCACCACCGTCGACACCGAGATGGTCACCGACGTGGCCGATTCCAAGCAGGAGCAATGA
More
|
||||||||||
| Protein seq | MACINMYNPDGGAAFGGGQPPALGPRISFSSDFVVEPPPPVQNRAMNLRCQEEDINFEFSVGSHPMMAADQLFSKGRILPLKDGGFSSGRPPTTLRDELRCDDRASAKGSSRWKEMLGLRKPLCVGGVNGTAKKSTTVDTEMVTDVADSKQEQ |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_02G034670 | OsN22_02G034670_01 | Chr02 | 33476878 | 33478666 | - | NAM | ||
| CDS seq | ATGGCATGCATCAACATGTACAACCCGGACGGCGGCGCGGCGTTCGGGGGCGGCCAGCCGCCGGCGCTGGGCCCGCGCATCTCCTTCTCCAGCGACTTTGTCGTCGAGCCACCGCCGCCGGTGCAGAACCGGGCGATGAACCTGCGGTGCCAGGAGGAGGATATCAACTTCGAGTTCTCGGTGGGTAGCCACCCCATGATGGCCGCCGACCAGCTCTTCTCCAAGGGCAGGATCCTTCCCCTCAAGGACGGCGGCTTCTCCTCCGGCCGGCCTCCCACCACGCTCCGCGACGAGCTTCGCTGCGACGACAGGGCGTCGGCCAAGGGATCCAGCCGGTGGAAGGAGATGCTCGGCCTGCGGAAGCCTCTCTGCGTCGGCGGCGTCAATGGCACCGCCAAGAAGAGCACCACCGTCGACACCGAGATGGTCACCGACGTGGCCGATTCCAAGCAGGAGCAATGA
More
|
|||||||
| Protein seq | MACINMYNPDGGAAFGGGQPPALGPRISFSSDFVVEPPPPVQNRAMNLRCQEEDINFEFSVGSHPMMAADQLFSKGRILPLKDGGFSSGRPPTTLRDELRCDDRASAKGSSRWKEMLGLRKPLCVGGVNGTAKKSTTVDTEMVTDVADSKQEQ |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_02G034670 | OsN22_02G034670_02 | Chr02 | 33477538 | 33478666 | - | IsoSeq | ||
| CDS seq | ATGGCACCGCCAAGAAGAGCACCACCGTCGACACCGAGATGGTCACCGACGTGGCCGATTCCAAGCAGGAGCAATGAGATGACATATATGGGACTCAGCCAAAACACACATGGAACTCTCGTCTCTGTCTCATATTGTGACCATCCTCTTGCATTGTACTTGTCTCAAAGGCTAGTTTTTGTAGATGATTGTGCTCGGTTGCTTGTG
More
|
|||||||
| Protein seq | MAPPRRAPPSTPRWSPTWPIPSRSNEMTYMGLSQNTHGTLVSVSYCDHPLALYLSQRLVFVDDCARLLV |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr02 | 33478014 | 33478666 | - | OsN22_02G034670_01 | OsN22_02G034670_01,OsN22_02G034670_02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 7.788180 | 0.759977 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0762600 | RBH | 0.145497 | 0.0 | 1.716829 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g52490 | RBH | 0.092236 | 0.0 | 0.414293 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0762600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0034660 | RBH | 0.0 | 68.461319 | 1.006374 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0034760 | RBH | 0.152610 | 8.070488 | 0.949400 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0034630 | RBH | 0.0 | 23.612818 | 4.668640 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0034230 | RBH | 0.0 | 1.190047 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0034290 | RBH | 0.0 | 21.163637 | 4.123789 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0525600 | RBH | 2.3926265 | 5.6228625 | 4.602994 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0034130 | RBH | 0.0 | 2.266279 | 0.386843 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0555600 | RBH | 2.989287 | 0.9279515 | 7.9370305 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0034380 | RBH | 0.049237 | 0.362281 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0034210 | RBH | 0.000000 | 12.598249 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0034470 | RBH | 1.404725 | 20.546539 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0034410 | RBH | 0.0 | 5.104932 | 1.232221 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0034000 | RBH | 0.069379 | 12.230621 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G013300 | SBH | 0.0 | 0.0 | 0.482435 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0034390 | RBH | 0.0 | 40.790756 | 3.476255 |
