Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_02G019680 | OGI:02055840 | 16/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr02:20139901-20143247 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCTCGTATTGCAGAAGGTGATGTTCACATTCGGTGCTTTGGGTAGAGGTCGTGCAAAGGGAGAAGCTTTTACTGGATTTACCAACCACCTATCACCATTTTAATTGTTACAACGACAATCTGACTAAAATAGCCTAAACCTTTCCAGCAGCTAAAATTGCGATCTGGTTAGGAGTGACGGTCATGGCGCCTGGCCTCGAAGGTGAAGGTGCAGACTCCAGAGCGAAGGGAGCAAGAAGAAAGGAATTGAGAAATAAGAGAGTGTGCACCGTCGGATCAGAACGGGTGGTGGATTGAGCAGAACTGCACGCCCGTGACTTTGCTATCCAAAGTCAGGAGATCCGTTTCCCAGTCCACAACATCACATGCTATGGGTGTAAAAACAAGAAGCAAAAGAAAAAAAAACAAAAAAAACATCACATATGCTATGGCCGAATAAAACGGAAAGGCACCTGATGCGATTCAGTAGCAACTTGCGGCCAAATAATAGCCGACCTGAAGTAGATCAGACATGGGGACTAGGGCTTTGGACCTGAGCTATCTTGACCATCTTTGATACAGCAAAGATCGTAGTTGTTTGGCGCATTTTTTTTTTTTTTGAGAACTCATGCACTTTATTAAAAGAAAGCGTTTTAGAAACACAAAGCATGAGTTACATTAACTGCTCCATTAGGAGTGAAGGAAAGAGCTCTTTTAGTAGGACAAACATCTCTGGAACAAATGTGAGAAATATTAGAGCAATCAAACATTGGTACTGAGGTTTTTGGATACTTTTTCGCTTCCGGAGAGATCAGACAATTCCTCCCTCGGCGGAAAAGTTCCAGCGTGCAGAGAATGAAATACAAAGGATGAGAGCATTCTACGGCTGTGTTCGCAAGTCAAGTTTTCCAACCTCCGCTGTCTCATTTCGTATACACACGTTTTTCGAGCTACTAAATGGTAAAAAATATGTAGAAAAGTTAATGTAAAAAAATATATTAATCTATTTTCAAATTTTTCTAGCTAATACTTAATTAATTATGCGCTAATAAAAAACCTGTTTTCCGTGCACGGGAGAGAGGTTTCCATCCCCTTCTCCCGAACACAGTCTACGAGTAGATCCTAGCCACAGGTATTTTTGGAACAGATCATGTATGGAGCACTTGGGACAGGTTTGTATAAAGCATTTTACATGTTCTGCAGCATTCTCTTATGTAATTCAAACCTTCTTGCTGTGCACTCCCTCCTCAAAAAGAATGCAATTCTGCATTCGAAATTTGTTGCCAAAAGAATACAATTCTGAAGTACTACTCCAATCATTCCTCATTTAAATTTTTTTCTCAACTTATCCCCAACCATCCTCACACTCCTTACCATTCTCCTTTAACGAGGGTATCTAAGTTATTTTCTTCTTACTGATTTGCCTTTTAGACGCCACTATTGTACTTGTATTTTTTTTTGGGTGTTTTACAGTACCCTCCACTTATACGTGTAGTAGTGTAGTAGGATTACCGTTTTTTTTGACAAATTGACCCTTTTGGAAAACTTATTTCGAAACTAACCCCTGCCAAAAACTTCAACCAAAAATAGGCCGTCGCCTCAGCGCCAAACACATTGGCGCTGACATTGGCCGTGTCAGCGCCAACGGGACTGGCGCTGACATTGTGCCACCGTGGCGGCCGGGCCGATCCCCAGCTGACGTGGCAGCTACCTCAGCGCCAACCGGACTGGTGCTGAGGTGGGACTTGGCCGCAACCCCTAAGGCCCAGACCAGCAAGCCTTCTGGATGGCTTGCGGGCTGGGACCTCAGCGCCAGCCATAATGGCGCTGACCGTGGGACACTCAGCGCCAGCCCACCTGGCGCTGAGGTGGGACTTGGCCGCAACCCCCAAGGCCCAGACCAGCAAGCCTGCTGGATGGCTTGCGGGCTGGGACCTCAGCGCCAGCCATAATGGCGCTGACCGTGGGACACTCAGCGCCAGCCCACCTGGCGCTGAGGTGGGACTTGGCCGTTTCGGCCTTGGCCCAGCCCAGCAAGCCTTCTGGATGGCTTGCGGGCTAGGACCTCAGCGCTAGCCATAATGGCGCTAACTGTGGGAAACTCAGCGCCAGTCCACCTGGCGCTGAGGTGGGCCTTGGCCGTTTCGAGCCTTCTGGATGGCTTGCGGGCTGGGACCTCAGCGCCATCCATAATGGCGCTGACTGTGGGAAACTCAGCGCCAGCCCACCTGGCGCTGAGGTTGGGCACCTCAGCGCCGAAGCGGTTGGCGCTGAGGTAGCTGCCACGTCAGCTAGGGGATCGGCCCGGCCGCCACGGTGGCACAATGTCAGCGCCAGTCCCATTGGCGCTGACACGGCCAACCTCAGCGCCAATGCGCTTGGCGCTGAGCCGACGGCCTAGTTTTGGTTGAAGTTTTTGGCAGGGGTTAGTTTCGAATTAAGTTTTTGAAAAGGGTCAATTTGTCAAAAAAATGGGTAGGATTAGATCTGACCTTTGATTTTTGGGGGCATTTTAGTCATTCTCTTAATTTTAGTGGAAGGGTATTACAGTAATTTCGTCTTCCAATCGTTTTCACTGTTCGCTAGACCCGCATTCCTCTGCTTCATCCGCCATCTGCGCATCGCCTCCCCTCCCCTCCACCTATTGTGCGCGGCGCCTCGCCGCCCATCCCTGCGACTCGGTGCGCCGCCGCGCCACCCCTCCACCTTCGCGCAACCGCGCTGGCCCTCACCTTTGCGCGACCCGTTGCCGCCCCTCCACCTCCGCGCGGTCGCGGCGCCCCTCCCCTTTCGCGCGAGCGCGACCTGGTGTTCGGCGCGTCGGCGATCCCGTCGTGGCGGACGTTGGGGTTCGTGGAGTACATCCCGTCAGGGAAGAAGCAGGGGGGCATGGTGCTGGTTGTCCCCGAGGGGAGCTACGCGGTGCGGCTCGGGAACGAGGCGTCGATCCGGCAGCGCCTCGCCGGCGCGGCGCGCGGCGCGCGGTACGCGCTCACGTTCAGCGCGGCGCGGACGTGCGCGCAGGCGGAGCGGCTGAACGTGTCGGCGTCGGGGCAGTGGGCGGTGCTCCCCATGCAGACCATGTACAGCAGCAACGGCTGGGACTCGTACGCCTGGACGTGGGACGCCGCTGCCAACGTGTTCGACGTCGTCATCCACAACCCCGGCGTCACCGAGGACCCCGCCTGCGGCTCCCTCATCAGAAACACGGTTGAAAACAGCTTCCAGATAGTCATATATAAAATGTGGAGGCAATGGCTGACAGAAAATTCAAACTCGGTTTGAATTTTGTCATAATTTAGCTAGATTTCAACTGGGAATGTACTGACCGTGTCGAAAAAAAAACAGTCAGTTTTTTCGTTGTGAT
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| CDS seq | ATGCTCGTATTGCAGAAGACCCGCATTCCTCTGCTTCATCCGCCATCTGCGCATCGCCTCCCCTCCCCTCCACCTATTGTGCGCGGCGCCTCGCCGCCCATCCCTGCGACTCGGTGCGCCGCCGCGCCACCCCTCCACCTTCGCGCAACCGCGCTGGCCCTCACCTTTGCGCGACCCGTTGCCGCCCCTCCACCTCCGCGCGGTCGCGGCGCCCCTCCCCTTTCGCGCGAGCGCGACCTGGTGTTCGGCGCGTCGGCGATCCCGTCGTGGCGGACGTTGGGGTTCGTGGAGTACATCCCGTCAGGGAAGAAGCAGGGGGGCATGGTGCTGGTTGTCCCCGAGGGGAGCTACGCGGTGCGGCTCGGGAACGAGGCGTCGATCCGGCAGCGCCTCGCCGGCGCGGCGCGCGGCGCGCGGTACGCGCTCACGTTCAGCGCGGCGCGGACGTGCGCGCAGGCGGAGCGGCTGAACGTGTCGGCGTCGGGGCAGTGGGCGGTGCTCCCCATGCAGACCATGTACAGCAGCAACGGCTGGGACTCGTACGCCTGGACGTGGGACGCCGCTGCCAACGTGTTCGACGTCGTCATCCACAACCCCGGCGTCACCGAGGACCCCGCCTGCGGCTCCCTCATCAGAAACACGGTTGAAAACAGCTTCCAGATAGTCATATATAAAATGTGGAGGCAATGGCTGACAGAAAATTCAAACTCGGTTTGA
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| Protein seq | MLVLQKTRIPLLHPPSAHRLPSPPPIVRGASPPIPATRCAAAPPLHLRATALALTFARPVAAPPPPRGRGAPPLSRERDLVFGASAIPSWRTLGFVEYIPSGKKQGGMVLVVPEGSYAVRLGNEASIRQRLAGAARGARYALTFSAARTCAQAERLNVSASGQWAVLPMQTMYSSNGWDSYAWTWDAAANVFDVVIHNPGVTEDPACGSLIRNTVENSFQIVIYKMWRQWLTENSNSV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_02G019680 | OsN22_02G019680_01 | Chr02 | 20139901 | 20143165 | + | NAM | ||
| CDS seq | ATGCTCGTATTGCAGAAGACCCGCATTCCTCTGCTTCATCCGCCATCTGCGCATCGCCTCCCCTCCCCTCCACCTATTGTGCGCGGCGCCTCGCCGCCCATCCCTGCGACTCGGTGCGCCGCCGCGCCACCCCTCCACCTTCGCGCAACCGCGCTGGCCCTCACCTTTGCGCGACCCGTTGCCGCCCCTCCACCTCCGCGCGGTCGCGGCGCCCCTCCCCTTTCGCGCGAGCGCGACCTGGTGTTCGGCGCGTCGGCGATCCCGTCGTGGCGGACGTTGGGGTTCGTGGAGTACATCCCGTCAGGGAAGAAGCAGGGGGGCATGGTGCTGGTTGTCCCCGAGGGGAGCTACGCGGTGCGGCTCGGGAACGAGGCGTCGATCCGGCAGCGCCTCGCCGGCGCGGCGCGCGGCGCGCGGTACGCGCTCACGTTCAGCGCGGCGCGGACGTGCGCGCAGGCGGAGCGGCTGAACGTGTCGGCGTCGGGGCAGTGGGCGGTGCTCCCCATGCAGACCATGTACAGCAGCAACGGCTGGGACTCGTACGCCTGGACGTGGGACGCCGCTGCCAACGTGTTCGACGTCGTCATCCACAACCCCGGCGTCACCGAGGACCCCGCCTGCGGCTCCCTCATCAGAAACACGGTTGAAAACAGCTTCCAGATAGTCATATATAAAATGTGGAGGCAATGGCTGACAGAAAATTCAAACTCGGTTTGA
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| Protein seq | MLVLQKTRIPLLHPPSAHRLPSPPPIVRGASPPIPATRCAAAPPLHLRATALALTFARPVAAPPPPRGRGAPPLSRERDLVFGASAIPSWRTLGFVEYIPSGKKQGGMVLVVPEGSYAVRLGNEASIRQRLAGAARGARYALTFSAARTCAQAERLNVSASGQWAVLPMQTMYSSNGWDSYAWTWDAAANVFDVVIHNPGVTEDPACGSLIRNTVENSFQIVIYKMWRQWLTENSNSV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_02G019680 | OsN22_02G019680_02 | Chr02 | 20142592 | 20143247 | + | IsoSeq | ||
| CDS seq | CAACCGCGCTGGCCCTCACCTTTGCGCGACCCGTTGCCGCCCCTCCACCTCCGCGCGGTCGCGGCGCCCCTCCCCTTTCGCGCGAGCGCGACCTGGTGTTCGGCGCGTCGGCGATCCCGTCGTGGCGGACGTTGGGGTTCGTGGAGTACATCCCGTCAGGGAAGAAGCAGGGGGGCATGGTGCTGGTTGTCCCCGAGGGGAGCTACGCGGTGCGGCTCGGGAACGAGGCGTCGATCCGGCAGCGCCTCGCCGGCGCGGCGCGCGGCGCGCGGTACGCGCTCACGTTCAGCGCGGCGCGGACGTGCGCGCAGGCGGAGC
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| Protein seq | QPRWPSPLRDPLPPLHLRAVAAPLPFRASATWCSARRRSRRGGRWGSWSTSRQGRSRGAWCWLSPRGATRCGSGTRRRSGSASPARRAARGTRSRSARRGRARRRS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.540919 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0527500 | RBH | 0.0 | 0.0 | 1.526819 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g32600 | RBH | 0.0 | 0.0 | 0.332482 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0527500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0019560 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0019670 | RBH | 0.0 | 0.0 | 1.446617 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0019610 | RBH | 0.0 | 0.0 | 1.835767 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0019390 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0019350 | RBH | 0.000000 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0319900 | RBH | 0.127743 | 0.64121 | 0.7208565 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0019060 | RBH | 0.0 | 0.0 | 0.662666 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0340100 | RBH | 0.855424 | 0.874621 | 1.2740325 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0019600 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0019330 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0019740 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0019460 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0019250 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0019400 | RBH | 0.0 | 0.0 | 5.663204 |
