Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_01G038250 | OGI:01011440 | 16/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr01:35084536-35085447 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGACACTATTCCAAATTTAGAGCAGCAGGATGATCATGAGTCTAGAACAAAAAGGCCAACTAGACTATGGTCTCATTACTACATAGAGTTACAAGCAGTCAAACTCTATAATGCCAAAATATTCAAGAAGTTCCAGGTGCAACTTAAAAAAACAACAAGACTACAACTCAATGAGATAGACAAATTCAAAACCTATGAAGTTTTCATAGCTCTGAATCAGACAATTGAGGTGTATAGACGAAGAAAGTACCTTGTTATGATAGACTTGGAGAAGGAAGATTTCAGTTGCATCTGTGCAATGTTCCAAAAGGATGGATTACTGTGTTCACATATCTTGAAAGTTATGCTCCACAACAACCTCAGCAGTATACCAGACAAATATATAATTCAGAGATGGAGAAAAAAAGAAGAAACATCAAAACTGAAATCTGGCAATCATATCATACCTGTTTCAGATTGCTCAACTCTCAGGTTCAATATCCTCTCAAGAAGAAGTGCTGAATTTGCTTCAAAAGGTGCCAAAACAACTGAATCATATGAGTTCATGATGCAACAATTTGATATGATTGATAAAGCTTGGAAAAATAGGAGTCCAGAAGAGACAAGGCAACAGCAAAGCAGTACAGAAAACCAGAACAATGCAAATTCAGCTTCAGAAGTTGATCATGTTGAAGTAGAAAATACAGCAGTTAATGAACTTCAGATATTGGATCCAGAGATAGCAAAATCAAAGGGAAGACCACAACAGCGATACAAAACTATTAGGGAACAAATAGAAGAAAAACATGTGAATCACTGCAGTCACTGTGGAAGAACAGATCACACATTTCCAAGCTGCCCATTGAAACACATAGAGTTCAATTTAGCAAAGAAAAAAAAAGGAAAACAAAAAACCAAGTGGAACAGGTAA
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| CDS seq | ATGGACACTATTCCAAATTTAGAGCAGCAGGATGATCATGAGTCTAGAACAAAAAGGCCAACTAGACTATGGTCTCATTACTACATAGAGTTACAAGCAGTCAAACTCTATAATGCCAAAATATTCAAGAAGTTCCAGGTGCAACTTAAAAAAACAACAAGACTACAACTCAATGAGATAGACAAATTCAAAACCTATGAAGTTTTCATAGCTCTGAATCAGACAATTGAGGTGTATAGACGAAGAAAGTACCTTGTTATGATAGACTTGGAGAAGGAAGATTTCAGTTGCATCTGTGCAATGTTCCAAAAGGATGGATTACTGTGTTCACATATCTTGAAAGTTATGCTCCACAACAACCTCAGCAGTATACCAGACAAATATATAATTCAGAGATGGAGAAAAAAAGAAGAAACATCAAAACTGAAATCTGGCAATCATATCATACCTGTTTCAGATTGCTCAACTCTCAGGTTCAATATCCTCTCAAGAAGAAGTGCTGAATTTGCTTCAAAAGGTGCCAAAACAACTGAATCATATGAGTTCATGATGCAACAATTTGATATGATTGATAAAGCTTGGAAAAATAGGAGTCCAGAAGAGACAAGGCAACAGCAAAGCAGTACAGAAAACCAGAACAATGCAAATTCAGCTTCAGAAGTTGATCATGTTGAAGTAGAAAATACAGCAGTTAATGAACTTCAGATATTGGATCCAGAGATAGCAAAATCAAAGGGAAGACCACAACAGCGATACAAAACTATTAGGGAACAAATAGAAGAAAAACATGTGAATCACTGCAGTCACTGTGGAAGAACAGATCACACATTTCCAAGCTGCCCATTGAAACACATAGAGTTCAATTTAGCAAAGAAAAAAAAAGGAAAACAAAAAACCAAGTGGAACAGGTAA
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| Protein seq | MDTIPNLEQQDDHESRTKRPTRLWSHYYIELQAVKLYNAKIFKKFQVQLKKTTRLQLNEIDKFKTYEVFIALNQTIEVYRRRKYLVMIDLEKEDFSCICAMFQKDGLLCSHILKVMLHNNLSSIPDKYIIQRWRKKEETSKLKSGNHIIPVSDCSTLRFNILSRRSAEFASKGAKTTESYEFMMQQFDMIDKAWKNRSPEETRQQQSSTENQNNANSASEVDHVEVENTAVNELQILDPEIAKSKGRPQQRYKTIREQIEEKHVNHCSHCGRTDHTFPSCPLKHIEFNLAKKKKGKQKTKWNR |
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| Function | Protein FAR1-RELATED SEQUENCE 3 [UniProtKB/Swiss-Prot:Q9ZVC9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_01G038250 | OsN22_01G038250_01 | Chr01 | 35084536 | 35085447 | + | NAM | ||
| CDS seq | ATGGACACTATTCCAAATTTAGAGCAGCAGGATGATCATGAGTCTAGAACAAAAAGGCCAACTAGACTATGGTCTCATTACTACATAGAGTTACAAGCAGTCAAACTCTATAATGCCAAAATATTCAAGAAGTTCCAGGTGCAACTTAAAAAAACAACAAGACTACAACTCAATGAGATAGACAAATTCAAAACCTATGAAGTTTTCATAGCTCTGAATCAGACAATTGAGGTGTATAGACGAAGAAAGTACCTTGTTATGATAGACTTGGAGAAGGAAGATTTCAGTTGCATCTGTGCAATGTTCCAAAAGGATGGATTACTGTGTTCACATATCTTGAAAGTTATGCTCCACAACAACCTCAGCAGTATACCAGACAAATATATAATTCAGAGATGGAGAAAAAAAGAAGAAACATCAAAACTGAAATCTGGCAATCATATCATACCTGTTTCAGATTGCTCAACTCTCAGGTTCAATATCCTCTCAAGAAGAAGTGCTGAATTTGCTTCAAAAGGTGCCAAAACAACTGAATCATATGAGTTCATGATGCAACAATTTGATATGATTGATAAAGCTTGGAAAAATAGGAGTCCAGAAGAGACAAGGCAACAGCAAAGCAGTACAGAAAACCAGAACAATGCAAATTCAGCTTCAGAAGTTGATCATGTTGAAGTAGAAAATACAGCAGTTAATGAACTTCAGATATTGGATCCAGAGATAGCAAAATCAAAGGGAAGACCACAACAGCGATACAAAACTATTAGGGAACAAATAGAAGAAAAACATGTGAATCACTGCAGTCACTGTGGAAGAACAGATCACACATTTCCAAGCTGCCCATTGAAACACATAGAGTTCAATTTAGCAAAGAAAAAAAAAGGAAAACAAAAAACCAAGTGGAACAGGTAA
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| Protein seq | MDTIPNLEQQDDHESRTKRPTRLWSHYYIELQAVKLYNAKIFKKFQVQLKKTTRLQLNEIDKFKTYEVFIALNQTIEVYRRRKYLVMIDLEKEDFSCICAMFQKDGLLCSHILKVMLHNNLSSIPDKYIIQRWRKKEETSKLKSGNHIIPVSDCSTLRFNILSRRSAEFASKGAKTTESYEFMMQQFDMIDKAWKNRSPEETRQQQSSTENQNNANSASEVDHVEVENTAVNELQILDPEIAKSKGRPQQRYKTIREQIEEKHVNHCSHCGRTDHTFPSCPLKHIEFNLAKKKKGKQKTKWNR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g61100 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0046910 | RBH | 0.0 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0046440 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0038630 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0038090 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0040020 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0639600 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0039700 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0612300 | SBH | 0.012 | 0 | 0.0042855 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0040050 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0040000 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0040240 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0037900 | SBH | 0.0 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0040080 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G020750 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0037930 | RBH | 0.0 | 0.0 | 0.0 |
