Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_01G032300 | OGI:01092750 | 16/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr01:30459682-30463285 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTGCGTGACCGCACCATTTGCGTCGCGGCCTCGCCTCGGCTTCTCCGTCCCGCCCTCGCAAGCAGCGCCCGCCTCCTGTTCGACGGAATGGCACAGTGGGACGCGCTCGTGGACGCCGCGCTTGCGAGGCTGGCGTCGAGGAACCTCCTGCGAGCCACGCGTCCCATCGCCCTCGCGCCACCTCCAGCGCCGGCTGAAACCTTCGCCGGCCCTGGCCCATGGGACCGCGCCGCCGTCGAGATCCAGCTCGACCGCGCAACCCTCCACCAATGGCTCGCCGAAGGTACTTGACAACTGTTTTTTCTTCTACTACTTCCCTGCAGCTGCAGGGATGCATGTCAAAATTCAGCTCCCTTTTCACCCCTTTCTATTTCTAATTCCGTTTAACTTAGTATTATTCGTGGGCTTAAGAACTCCAAAAGGCAAATTGCTTAAGAATCTACCTGTTCGATCGAAATATAGTTTGTTCATCTTTAATACAGAGATACTCAAGTCTTTTGCGTATTTCCAAGAAAAATATTGGTTTGTTTCGTTGTGAATTTGGGTTTTCAGTGACTTTGCTCATGGCAAAGTTTGGTTTGATTAGGTGGTGAAGCGACTGGCCAAGAAGAGGAGGTGGATGAGAAACTCATTCTATTCTCCGGAAATGATTACATGGGCCTCAGCTCCCATCCGGCAATCCGCAAGGCTGCAGTGAAGGTGTGCTAATTCTGTACCTCTAGCCATCGTTTGGTCTATCGAGTTTCTTGCATACTGCATTACTGTTTGATTTTCTATATTTAAGAAAATAATTTCTGTTTGATTTTACTAACATCATGTCTCTTTGCTAGGCAGCTCAAGAGTACGGCATGGGACCTAGGGGCTCTGCCTTGATATGTGGCTATACTACTTATCACAAATTGGTGGAGGAATCTTTGGCAGAGTTGAAGAAAAAGGAGGTCCAGTATCATATTTTATTTTACGTGAACACCTGTGTTTGCGGAAATTATATGAAGTGACCATCATTTTTTAAGCTATGCATCCTTACTACAGAATTCTTCTACAGGATTGCCTTCTTTGCCCAACAGGATTTTCTGCCAACATGGCTGTGATGACTGCTCTAGGAAGTGTGAGCTCTCTTTTGTCTGTTGGGAGAAAACCTGCAGAGGGTGAGAGAATTGCAGTTTTCTCGGATGCTCTCAACCATGCTTCTATCATTGATGGAATTCGCCTTGTTGAGCGACAGCAAGAAGTAGTAGCATTTGTCTACAAGCACTGTGACATGCATCATCTTGATTTCCTACTGTATGCTTTTCACTTTCCTGCCATAACATACATAAATTAGCAACCAACTGATTTATCTATTAACCATATCAATGAATACATGTGCAGGTCCAGTTGCTCAATTGAAAAGAAAGTTGTTGTCACAGATAGGCAAGTAACTTTTCCAAGTGAACTGACTTGTCTGCATATGCATAGTATCAGAGTATCAAATTCTGAACTCTGAAGCTACTTTTTGTTGATAAAAAATGCAGCCTGTTCAGCATGGATGGTGATTTTGCTCCATTACCAGAACTTGTCAAATTACGCAGAAAGTATGGGTTTTTGTTGGTCATCGACGATGTTAGTATTTTATCTCCTCTCAAGTAAATTTTTATAGGCCTTGATAGTGATCAAGTTATGTTGCAATTTTTGTTTTGAAGGCACATGGAACACTTGTTTGTGGCGAGAATGGTGGTGGTGCACCCGAGCTGTTTGGATGCGAAAATGACATTGACATAAGCGTTGGTACCCTAAGTAAGGCTGCTGGCTGCCAGGGTGGTTTTATAGTTTGCAGGTAATCTATTATCATGTCATATCCATACTATACACCAAGGAAAGAGCTGCCATAATTGTATATATCGGGAGTGAAGCATGTGTTCTTAGTTCTTACAAATGAAGGAGTGCATATGCACAGAATATCTGAGACAGTTGGACAGATATTACTGCAAATATATGAACTGAGCAATGTGCCCATCAAATTATCAAAGCCAATAGGAGTGTGGGAGCATACGCTTTGATCGTTGGATCAGAGTGTATCTTTTAATTCCAAACACTTTGATACACCTGTATCTGTTGCCATTCTGATTTATGGGAGCTTTGCAACCATGCTATTTGCTGACGTCATCTGGGTAACTGGGTTATAACTTGTCATGCAAATATTTAACCTTATACACAGTCAAAATGTATTGTCCACATAGATTGTGAACGCTCAACATCACATTGCTTCTTTGTACTTTGGGTGCAGAATCTCCTGTGATAGTTTCTGACTTAATGAGCAATTATTTGAAATATGTTGTGCAGCAACCGATGGAAGAGGCTAATTCAATCACGTGGCCGCTCATTCATATTTTCAACTGCTTTGCCAGTTCCAGTAGTTGCCTCTGTGCATGGTAATACTCACTTCGAATATTAAATTATAGCGCCAACATTTCATTTGTGGGCAAAAGGCATAGCATTGCTACCATATTAATTTCACATTAGTCGCTTAGTAAGAATGAAGATTTCAATAAAACACCTGTGCATATCATGAAGATAAAGTTCATTGTAGAGTATGGTATGGTTAAGTAACTGAAATCTTTTCTAATTATTTCAGCTGCTCTCCATGTCTCAAAGAAGGAGAGATGGCGGAGATCAGTGATCTGGAGGCATGTGCAGTATTTTGCTTCTTTGACCAAACTCGACTTAACTAGTCCCATAATTTCCATAGTAGTTGGAAGCGAAGAAGCAGCACTTAGGGCTGGCAGGTTCTCATTTCTTCCATTTTTGTATATTGCTAAGTCTTATTTGCTTAAAGTTTCTAATATTTTCGTATAAATCTGCAGGCATATGCTAAGATCTGGATTTCATGTTACACCAATTCGACCACCCACAGTACCACAAAACTCGTGCAGGTTGTTGTATTTCTTTTCCTGTCATTTTCCATCCCTGTGTCCATTTATACAAAAAGAAAAAATCACAACCGGTGTTGATTAGGGATCATAAACTGAGTAATTGAAGTAGAGCTCAGGGTATACATTGCTTTAGTTAATAACTTAATATGGTTTCTTGTACTACGGCACTGTGCTCTCTGTAGATGGTATCCCTGCTAGGTTTTGTTGTACTGTATGAGACAGTCCTCTTTTGATCAATATTGTAAACGAGCTAGGACTTGTATCAACCAAGCTTAAATGTTTTGGTTTCCATCAATCTCTTGCCAGGTTGCGAATAACTCTAAGCGCTTCTCATTCCTTGGATGACATCAAAAGGCTGGTAGATGCACTATCACCCTGGCTTCCTGACAAACATGATGAGCAGACTTATGTTATGGCGTCAAAACTTTAAGCAAGTCCATCGGAGAATTAAGTTTCAATATCTGATGCCCTGCTAGTTGATATGAGGAGAAGGGGATAAGTTGATTCTAGTTGACGCGATTATTTGCATATATCCTTTTATTTATGTTTGTATGATTGTATCACCACGATGTAAAACATAATTTATATGATCTCCGGATGCCCTACAAGTTGGGTAAAAGAATTTAAAAGTATTATTTTATGACCTTTGCTATCTATAAAGAATTAAGTCGGAAAATTGACTGATTAATATT
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| CDS seq | ATGGCACAGTGGGACGCGCTCGTGGACGCCGCGCTTGCGAGGCTGGCGTCGAGGAACCTCCTGCGAGCCACGCGTCCCATCGCCCTCGCGCCACCTCCAGCGCCGGCTGAAACCTTCGCCGGCCCTGGCCCATGGGACCGCGCCGCCGTCGAGATCCAGCTCGACCGCGCAACCCTCCACCAATGGCTCGCCGAAGGTGGTGAAGCGACTGGCCAAGAAGAGGAGGTGGATGAGAAACTCATTCTATTCTCCGGAAATGATTACATGGGCCTCAGCTCCCATCCGGCAATCCGCAAGGCTGCAGTGAAGGCAGCTCAAGAGTACGGCATGGGACCTAGGGGCTCTGCCTTGATATGTGGCTATACTACTTATCACAAATTGGTGGAGGAATCTTTGGCAGAGTTGAAGAAAAAGGAGGATTGCCTTCTTTGCCCAACAGGATTTTCTGCCAACATGGCTGTGATGACTGCTCTAGGAAGTGTGAGCTCTCTTTTGTCTGTTGGGAGAAAACCTGCAGAGGGTGAGAGAATTGCAGTTTTCTCGGATGCTCTCAACCATGCTTCTATCATTGATGGAATTCGCCTTGTTGAGCGACAGCAAGAAGTAGTAGCATTTGTCTACAAGCACTGTGACATGCATCATCTTGATTTCCTACTGTCCAGTTGCTCAATTGAAAAGAAAGTTGTTGTCACAGATAGCCTGTTCAGCATGGATGGTGATTTTGCTCCATTACCAGAACTTGTCAAATTACGCAGAAAGTATGGGTTTTTGTTGGTCATCGACGATGCACATGGAACACTTGTTTGTGGCGAGAATGGTGGTGGTGCACCCGAGCTGTTTGGATGCGAAAATGACATTGACATAAGCGTTGGTACCCTAAGTAAGGCTGCTGGCTGCCAGGGTGGTTTTATAGTTTGCAGCAACCGATGGAAGAGGCTAATTCAATCACGTGGCCGCTCATTCATATTTTCAACTGCTTTGCCAGTTCCAGTAGTTGCCTCTGTGCATGCTGCTCTCCATGTCTCAAAGAAGGAGAGATGGCGGAGATCAGTGATCTGGAGGCATGTGCAGTATTTTGCTTCTTTGACCAAACTCGACTTAACTAGTCCCATAATTTCCATAGTAGTTGGAAGCGAAGAAGCAGCACTTAGGGCTGGCAGGCATATGCTAAGATCTGGATTTCATGTTACACCAATTCGACCACCCACAGTACCACAAAACTCGTGCAGGTTGCGAATAACTCTAAGCGCTTCTCATTCCTTGGATGACATCAAAAGGCTGGTAGATGCACTATCACCCTGGCTTCCTGACAAACATGATGAGCAGACTTATGTTATGGCGTCAAAACTTTAA
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| Protein seq | MAQWDALVDAALARLASRNLLRATRPIALAPPPAPAETFAGPGPWDRAAVEIQLDRATLHQWLAEGGEATGQEEEVDEKLILFSGNDYMGLSSHPAIRKAAVKAAQEYGMGPRGSALICGYTTYHKLVEESLAELKKKEDCLLCPTGFSANMAVMTALGSVSSLLSVGRKPAEGERIAVFSDALNHASIIDGIRLVERQQEVVAFVYKHCDMHHLDFLLSSCSIEKKVVVTDSLFSMDGDFAPLPELVKLRRKYGFLLVIDDAHGTLVCGENGGGAPELFGCENDIDISVGTLSKAAGCQGGFIVCSNRWKRLIQSRGRSFIFSTALPVPVVASVHAALHVSKKERWRRSVIWRHVQYFASLTKLDLTSPIISIVVGSEEAALRAGRHMLRSGFHVTPIRPPTVPQNSCRLRITLSASHSLDDIKRLVDALSPWLPDKHDEQTYVMASKL |
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| Function | 8-amino-7-oxononanoate synthase [UniProtKB/Swiss-Prot:Q8GW43] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_01G032300 | OsN22_01G032300_02 | Chr01 | 30459682 | 30463285 | + | NAM | ||
| CDS seq | ATGGCACAGTGGGACGCGCTCGTGGACGCCGCGCTTGCGAGGCTGGCGTCGAGGAACCTCCTGCGAGCCACGCGTCCCATCGCCCTCGCGCCACCTCCAGCGCCGGCTGAAACCTTCGCCGGCCCTGGCCCATGGGACCGCGCCGCCGTCGAGATCCAGCTCGACCGCGCAACCCTCCACCAATGGCTCGCCGAAGGTGGTGAAGCGACTGGCCAAGAAGAGGAGGTGGATGAGAAACTCATTCTATTCTCCGGAAATGATTACATGGGCCTCAGCTCCCATCCGGCAATCCGCAAGGCTGCAGTGAAGGCAGCTCAAGAGTACGGCATGGGACCTAGGGGCTCTGCCTTGATATGTGGCTATACTACTTATCACAAATTGGTGGAGGAATCTTTGGCAGAGTTGAAGAAAAAGGAGGATTGCCTTCTTTGCCCAACAGGATTTTCTGCCAACATGGCTGTGATGACTGCTCTAGGAAGTGTGAGCTCTCTTTTGTCTGTTGGGAGAAAACCTGCAGAGGGTGAGAGAATTGCAGTTTTCTCGGATGCTCTCAACCATGCTTCTATCATTGATGGAATTCGCCTTGTTGAGCGACAGCAAGAAGTAGTAGCATTTGTCTACAAGCACTGTGACATGCATCATCTTGATTTCCTACTGTCCAGTTGCTCAATTGAAAAGAAAGTTGTTGTCACAGATAGCCTGTTCAGCATGGATGGTGATTTTGCTCCATTACCAGAACTTGTCAAATTACGCAGAAAGTATGGGTTTTTGTTGGTCATCGACGATGCACATGGAACACTTGTTTGTGGCGAGAATGGTGGTGGTGCACCCGAGCTGTTTGGATGCGAAAATGACATTGACATAAGCGTTGGTACCCTAAGTAAGGCTGCTGGCTGCCAGGGTGGTTTTATAGTTTGCAGCAACCGATGGAAGAGGCTAATTCAATCACGTGGCCGCTCATTCATATTTTCAACTGCTTTGCCAGTTCCAGTAGTTGCCTCTGTGCATGCTGCTCTCCATGTCTCAAAGAAGGAGAGATGGCGGAGATCAGTGATCTGGAGGCATGTGCAGTATTTTGCTTCTTTGACCAAACTCGACTTAACTAGTCCCATAATTTCCATAGTAGTTGGAAGCGAAGAAGCAGCACTTAGGGCTGGCAGGCATATGCTAAGATCTGGATTTCATGTTACACCAATTCGACCACCCACAGTACCACAAAACTCGTGCAGGTTGCGAATAACTCTAAGCGCTTCTCATTCCTTGGATGACATCAAAAGGCTGGTAGATGCACTATCACCCTGGCTTCCTGACAAACATGATGAGCAGACTTATGTTATGGCGTCAAAACTTTAA
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| Protein seq | MAQWDALVDAALARLASRNLLRATRPIALAPPPAPAETFAGPGPWDRAAVEIQLDRATLHQWLAEGGEATGQEEEVDEKLILFSGNDYMGLSSHPAIRKAAVKAAQEYGMGPRGSALICGYTTYHKLVEESLAELKKKEDCLLCPTGFSANMAVMTALGSVSSLLSVGRKPAEGERIAVFSDALNHASIIDGIRLVERQQEVVAFVYKHCDMHHLDFLLSSCSIEKKVVVTDSLFSMDGDFAPLPELVKLRRKYGFLLVIDDAHGTLVCGENGGGAPELFGCENDIDISVGTLSKAAGCQGGFIVCSNRWKRLIQSRGRSFIFSTALPVPVVASVHAALHVSKKERWRRSVIWRHVQYFASLTKLDLTSPIISIVVGSEEAALRAGRHMLRSGFHVTPIRPPTVPQNSCRLRITLSASHSLDDIKRLVDALSPWLPDKHDEQTYVMASKL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_01G032300 | OsN22_01G032300_01 | Chr01 | 30459682 | 30463285 | + | NAM | ||
| CDS seq | ATGGGACCTAGGGGCTCTGCCTTGATATGTGGCTATACTACTTATCACAAATTGGTGGAGGAATCTTTGGCAGAGTTGAAGAAAAAGGAGGATTGCCTTCTTTGCCCAACAGGATTTTCTGCCAACATGGCTGTGATGACTGCTCTAGGAAGTGTGAGCTCTCTTTTGTCTGTTGGGAGAAAACCTGCAGAGGGTGAGAGAATTGCAGTTTTCTCGGATGCTCTCAACCATGCTTCTATCATTGATGGAATTCGCCTTGTTGAGCGACAGCAAGAAGTAGTAGCATTTGTCTACAAGCACTGTGACATGCATCATCTTGATTTCCTACTGTCCAGTTGCTCAATTGAAAAGAAAGTTGTTGTCACAGATAGCCTGTTCAGCATGGATGGTGATTTTGCTCCATTACCAGAACTTGTCAAATTACGCAGAAAGTATGGGTTTTTGTTGGTCATCGACGATGCACATGGAACACTTGTTTGTGGCGAGAATGGTGGTGGTGCACCCGAGCTGTTTGGATGCGAAAATGACATTGACATAAGCGTTGGTACCCTAAGTAAGGCTGCTGGCTGCCAGGGTGGTTTTATAGTTTGCAGCAACCGATGGAAGAGGCTAATTCAATCACGTGGCCGCTCATTCATATTTTCAACTGCTTTGCCAGTTCCAGTAGTTGCCTCTGTGCATGCTGCTCTCCATGTCTCAAAGAAGGAGAGATGGCGGAGATCAGTGATCTGGAGGCATGTGCAGTATTTTGCTTCTTTGACCAAACTCGACTTAACTAGTCCCATAATTTCCATAGTAGTTGGAAGCGAAGAAGCAGCACTTAGGGCTGGCAGGCATATGCTAAGATCTGGATTTCATGTTACACCAATTCGACCACCCACAGTACCACAAAACTCGTGCAGGTTGCGAATAACTCTAAGCGCTTCTCATTCCTTGGATGACATCAAAAGGCTGGTAGATGCACTATCACCCTGGCTTCCTGACAAACATGATGAGCAGACTTATGTTATGGCGTCAAAACTTTAA
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| Protein seq | MGPRGSALICGYTTYHKLVEESLAELKKKEDCLLCPTGFSANMAVMTALGSVSSLLSVGRKPAEGERIAVFSDALNHASIIDGIRLVERQQEVVAFVYKHCDMHHLDFLLSSCSIEKKVVVTDSLFSMDGDFAPLPELVKLRRKYGFLLVIDDAHGTLVCGENGGGAPELFGCENDIDISVGTLSKAAGCQGGFIVCSNRWKRLIQSRGRSFIFSTALPVPVVASVHAALHVSKKERWRRSVIWRHVQYFASLTKLDLTSPIISIVVGSEEAALRAGRHMLRSGFHVTPIRPPTVPQNSCRLRITLSASHSLDDIKRLVDALSPWLPDKHDEQTYVMASKL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr01 | 30460380 | 30460516 | + | OsN22_01G032300_02 | OsN22_01G032300_02,OsN22_01G032300_01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.332292 | 1.032729 | 0.408688 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0736400 | RBH | 0.098404 | 0.000000 | 0.640799 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g53450 | RBH | 0.061462 | 0.000000 | 0.152353 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0736400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0032820 | RBH | 0.0 | 0.0 | 3.170187 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0032320 | RBH | 0.000000 | 0.000000 | 0.335549 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0032750 | RBH | 0.255478 | 0.488857 | 2.512470 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0032040 | RBH | 0.0 | 0.027093 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0031730 | RBH | 1.004415 | 3.043264 | 4.489997 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0510100 | RBH | 1.033237 | 2.4767425 | 2.89135 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0031430 | RBH | 0.060681 | 0.088233 | 0.038647 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0503300 | RBH | 0.5838785 | 1.081089 | 3.406176 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0031670 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0031720 | RBH | 0.049058 | 2.831343 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0031900 | RBH | 0.0 | 1.500595 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0032060 | RBH | 0.086375 | 0.000000 | 0.251713 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0031840 | RBH | 0.0 | 0.652244 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G019940 | RBH | 0.000000 | 0.582039 | 1.079622 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0031960 | RBH | 0.100180 | 0.000000 | 0.554152 |
