Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_01G029440 | OGI:01086570 | 16/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr01:28318892-28320525 | ||||||||
| Gene Symbol | AP2/EREBP127, AP2/EREBP#127, OsRAV11, RAV11 | ||||||||||
| DNA seq | GCAGATGGGGAAATATCTCCATTGGTTGTGGTTAATTGACATTTGACAGATATGATGATGGATAATTTCAAATGTTTCTTCTTCTTCTTGTGTGTCAGTTGGTCTAGCCTTCTAGGGCTATGCTTCATTAGTGTACACTTGGGATGAAAAGATTTACAACAAAGCAAGCAAGAACATGGGCGAATAAATTAACAAAAAAAACCAAGTGAGATTAGTAGATAGGATCAACAAGGGACTAAGCTAGCTACCACCTGAATTATGATGCATGGGAGCAAAAAAGACACTAGCTAGAGAAGATCGAGCTAATAGTGCTAACTCTATACTAGTGCCAGCTCTATGCATTGCTTCTTGAACGCCGCCGCTTGTGGAGGCGTCGTCGCCGCCAAGTCCCTGGCTCTCTTGCACCCGGCCATCTGTTCGACCGGCGCCGGCGCCGTGAGCAGGTCCACGCCGAAGAGCCTGACGGCCTTCACCGGCGACGGCGCTGGCTGATCAGCGGGCGACGCGAGGGCGGCGCCGGTCGACCGTACTAACTTGCAGTCGATGAAGAGCTTGCCGTCGTCGCCGGCACTGGCGGCGGAGCGGTAGAAGCCGACGACGTCGCCGGCGTGGAGACCCTTCTCCTTGACGAAGCGGCTCCAGCCCTTGGTTAGCACGTAGCTCTGGCTGCTGTTCCAGTACGAGTACCGGAACCGCCACACCTTGCCGGCGGCGTCCTCGAAGTTGAGGAGGACACCCTTGCTCTCGCCGCCGGCGGACGGGAGCTGTAGCGGGAAGTGCTTCTCGGCGTGCTGCTTCGGTATGACGAGCCTGTTCAGCTTGCCCACGTCGCTCGGGGTGACCGTCTTGTCGAACAGGTGGTCGCGCGCCGCGGCGGGCGCGAAGGGGGAGCGGGGCGACGAGAGGTGGCCGTTGGAGAGGGAGGCGGTGGTGGTCGCGGCCGACGGCGTGGAGGCGGCGAAGGTGCGCTTGCTCTGCGCGAGCTCGTCGAAGTAGGTGTGCTTGCGGAGCATGTCGACGACCTCGGCCTTGGAGCGCGTGGCGAGGAAGCGAAGCTCGGCGGCGGCGTCCGGGTCGGCCTCGGCGAGCGGGCGGAAGTTGGTGACGGCGTCGCGGCCGCGGAAGCGCTGCGCGGCGACGTCGTAGGCGCGCGCGGCGTCGTCCTCCCCGGCGAACGTGCCGAGCCACACCCGCTGGTGCCGCTCGTAGATCTGCGCGCCCCACCTCCCGTTGGGCTGCGGCACGACGCCCTTGAACTTGGACGACGGCAGCTTCCCTCCCGCACCGCCGGCACCGCCGCCGCCGCCGCCGCACACACGTCCCCCGGACCCGGAGTCCGCCTCCGCGCCAGGCTCGGCCGCGTCCACCACCGCGCTCGCCCCGCTCCCCATGCGCTCCAGCGGCGCCGTCTCCGCCGCCGCGGCGGCCAACGCCCTCAGCTTGTCCGTGGACGAGCCGCCGCTGTTGGTATCATCCACCAGGCAGCTGGAGCTGTCCATTTCAGTAGACCTCACACACTAGCACACTCCTACTCTCCTCTACCCCAGTACGTACGGATGCAACTCAACTCGACTCGAACTATCTCTTGCTTCCTTCTGTTGGCGATGCTATAGGCGGCAAGCGTAGGATAAGTA
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| CDS seq | ATGGACAGCTCCAGCTGCCTGGTGGATGATACCAACAGCGGCGGCTCGTCCACGGACAAGCTGAGGGCGTTGGCCGCCGCGGCGGCGGAGACGGCGCCGCTGGAGCGCATGGGGAGCGGGGCGAGCGCGGTGGTGGACGCGGCCGAGCCTGGCGCGGAGGCGGACTCCGGGTCCGGGGGACGTGTGTGCGGCGGCGGCGGCGGCGGTGCCGGCGGTGCGGGAGGGAAGCTGCCGTCGTCCAAGTTCAAGGGCGTCGTGCCGCAGCCCAACGGGAGGTGGGGCGCGCAGATCTACGAGCGGCACCAGCGGGTGTGGCTCGGCACGTTCGCCGGGGAGGACGACGCCGCGCGCGCCTACGACGTCGCCGCGCAGCGCTTCCGCGGCCGCGACGCCGTCACCAACTTCCGCCCGCTCGCCGAGGCCGACCCGGACGCCGCCGCCGAGCTTCGCTTCCTCGCCACGCGCTCCAAGGCCGAGGTCGTCGACATGCTCCGCAAGCACACCTACTTCGACGAGCTCGCGCAGAGCAAGCGCACCTTCGCCGCCTCCACGCCGTCGGCCGCGACCACCACCGCCTCCCTCTCCAACGGCCACCTCTCGTCGCCCCGCTCCCCCTTCGCGCCCGCCGCGGCGCGCGACCACCTGTTCGACAAGACGGTCACCCCGAGCGACGTGGGCAAGCTGAACAGGCTCGTCATACCGAAGCAGCACGCCGAGAAGCACTTCCCGCTACAGCTCCCGTCCGCCGGCGGCGAGAGCAAGGGTGTCCTCCTCAACTTCGAGGACGCCGCCGGCAAGGTGTGGCGGTTCCGGTACTCGTACTGGAACAGCAGCCAGAGCTACGTGCTAACCAAGGGCTGGAGCCGCTTCGTCAAGGAGAAGGGTCTCCACGCCGGCGACGTCGTCGGCTTCTACCGCTCCGCCGCCAGTGCCGGCGACGACGGCAAGCTCTTCATCGACTGCAAGTTAGTACGGTCGACCGGCGCCGCCCTCGCGTCGCCCGCTGATCAGCCAGCGCCGTCGCCGGTGAAGGCCGTCAGGCTCTTCGGCGTGGACCTGCTCACGGCGCCGGCGCCGGTCGAACAGATGGCCGGGTGCAAGAGAGCCAGGGACTTGGCGGCGACGACGCCTCCACAAGCGGCGGCGTTCAAGAAGCAATGCATAGAGCTGGCACTAGTATAG
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| Protein seq | MDSSSCLVDDTNSGGSSTDKLRALAAAAAETAPLERMGSGASAVVDAAEPGAEADSGSGGRVCGGGGGGAGGAGGKLPSSKFKGVVPQPNGRWGAQIYERHQRVWLGTFAGEDDAARAYDVAAQRFRGRDAVTNFRPLAEADPDAAAELRFLATRSKAEVVDMLRKHTYFDELAQSKRTFAASTPSAATTTASLSNGHLSSPRSPFAPAAARDHLFDKTVTPSDVGKLNRLVIPKQHAEKHFPLQLPSAGGESKGVLLNFEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDVVGFYRSAASAGDDGKLFIDCKLVRSTGAALASPADQPAPSPVKAVRLFGVDLLTAPAPVEQMAGCKRARDLAATTPPQAAAFKKQCIELALV |
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| Function | AP2/ERF and B3 domain-containing protein Os01g0693400 [UniProtKB/Swiss-Prot:Q8RZX9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_01G029440 | OsN22_01G029440_01 | Chr01 | 28318892 | 28320525 | - | NAM | ||
| CDS seq | ATGGACAGCTCCAGCTGCCTGGTGGATGATACCAACAGCGGCGGCTCGTCCACGGACAAGCTGAGGGCGTTGGCCGCCGCGGCGGCGGAGACGGCGCCGCTGGAGCGCATGGGGAGCGGGGCGAGCGCGGTGGTGGACGCGGCCGAGCCTGGCGCGGAGGCGGACTCCGGGTCCGGGGGACGTGTGTGCGGCGGCGGCGGCGGCGGTGCCGGCGGTGCGGGAGGGAAGCTGCCGTCGTCCAAGTTCAAGGGCGTCGTGCCGCAGCCCAACGGGAGGTGGGGCGCGCAGATCTACGAGCGGCACCAGCGGGTGTGGCTCGGCACGTTCGCCGGGGAGGACGACGCCGCGCGCGCCTACGACGTCGCCGCGCAGCGCTTCCGCGGCCGCGACGCCGTCACCAACTTCCGCCCGCTCGCCGAGGCCGACCCGGACGCCGCCGCCGAGCTTCGCTTCCTCGCCACGCGCTCCAAGGCCGAGGTCGTCGACATGCTCCGCAAGCACACCTACTTCGACGAGCTCGCGCAGAGCAAGCGCACCTTCGCCGCCTCCACGCCGTCGGCCGCGACCACCACCGCCTCCCTCTCCAACGGCCACCTCTCGTCGCCCCGCTCCCCCTTCGCGCCCGCCGCGGCGCGCGACCACCTGTTCGACAAGACGGTCACCCCGAGCGACGTGGGCAAGCTGAACAGGCTCGTCATACCGAAGCAGCACGCCGAGAAGCACTTCCCGCTACAGCTCCCGTCCGCCGGCGGCGAGAGCAAGGGTGTCCTCCTCAACTTCGAGGACGCCGCCGGCAAGGTGTGGCGGTTCCGGTACTCGTACTGGAACAGCAGCCAGAGCTACGTGCTAACCAAGGGCTGGAGCCGCTTCGTCAAGGAGAAGGGTCTCCACGCCGGCGACGTCGTCGGCTTCTACCGCTCCGCCGCCAGTGCCGGCGACGACGGCAAGCTCTTCATCGACTGCAAGTTAGTACGGTCGACCGGCGCCGCCCTCGCGTCGCCCGCTGATCAGCCAGCGCCGTCGCCGGTGAAGGCCGTCAGGCTCTTCGGCGTGGACCTGCTCACGGCGCCGGCGCCGGTCGAACAGATGGCCGGGTGCAAGAGAGCCAGGGACTTGGCGGCGACGACGCCTCCACAAGCGGCGGCGTTCAAGAAGCAATGCATAGAGCTGGCACTAGTATAG
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| Protein seq | MDSSSCLVDDTNSGGSSTDKLRALAAAAAETAPLERMGSGASAVVDAAEPGAEADSGSGGRVCGGGGGGAGGAGGKLPSSKFKGVVPQPNGRWGAQIYERHQRVWLGTFAGEDDAARAYDVAAQRFRGRDAVTNFRPLAEADPDAAAELRFLATRSKAEVVDMLRKHTYFDELAQSKRTFAASTPSAATTTASLSNGHLSSPRSPFAPAAARDHLFDKTVTPSDVGKLNRLVIPKQHAEKHFPLQLPSAGGESKGVLLNFEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDVVGFYRSAASAGDDGKLFIDCKLVRSTGAALASPADQPAPSPVKAVRLFGVDLLTAPAPVEQMAGCKRARDLAATTPPQAAAFKKQCIELALV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.812723 | 0.942655 | 0.434324 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0693400 | RBH | 0.627543 | 1.239531 | 1.932060 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g49830 | RBH | 0.397902 | 0.874783 | 0.466323 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0693400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0029940 | RBH | 0.904704 | 1.605961 | 1.940660 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0029550 | RBH | 0.546436 | 0.0 | 0.917424 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0029930 | RBH | 1.129102 | 1.364423 | 2.835063 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0029160 | RBH | 0.218218 | 0.313898 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0028850 | RBH | 6.050731 | 4.189006 | 5.374744 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0475600 | RBH | 19.5277365 | 139.074936 | 184.3871155 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0028580 | RBH | 0.490078 | 0.780921 | 0.373402 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0464800 | RBH | 27.9703865 | 91.3395805 | 13.005238 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0028840 | RBH | 0.278684 | 0.296959 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0028740 | RBH | 0.774110 | 3.687737 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0029030 | RBH | 15.796470 | 5.319732 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0029200 | RBH | 1.116547 | 0.725218 | 0.846204 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0029000 | RBH | 0.671597 | 6.789073 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G025130 | RBH | 0.187990 | 0.529698 | 0.423358 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0029120 | RBH | 3.427588 | 15.701073 | 1.433140 |
