Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_01G017880 | OGI:01052280 | 16/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr01:16970917-16974082 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CCAAATGTAACTAGTCTCTTCTTACCGGAATCCCCACACCTTCTCGCCACGGTCCGACGCGCAAGCGCGGCGGCGCTCGCTCTCGCGGTTCTCGGTGACGGCGGCCTCGTCCCACTCCCGCCCGGGGATGAACGGCACCCCGTTGCGTTGCCATCTCTAGTCGCGCATGACCACCCGCGCCGGCGCACCTCTCGCCGTCTTCCTCGTCTCGTCCCTCAAGTCGGCCGCCGCACGCCTCAGCCACGGCGAGCAGCTCCACGCGCTCGCTGCCAAGTCGGGCCTGCTCACCTCCAATCTTTTCGTCCGCAACTCCCTCCTCGCCTTCTACTCCCGCGTCGCCCCCAGCCTCGCCTACCACCTGTTCGATGAAATACCCCCGCTCCTCCGCGACGCCACCGCCCACAACATTCTCCTCTCCGCGCTCGCCCGCGCGGGCCGCCTCGAACGCGCGCAGTGCCTGCTCGCGGAGATGCCTCAGAGGGACGCGGTCTCGTTCACCACTGTCATTTCCGCCCTCTCGCGCTCCGGTCATCCTGAGCGCGCCCTGGCCGTCTTCCGCGATATGCTCACCGAGGCCGTGCAGCCCAACGAGGTTACACTTGCGGAAGTGCTCACGGCGATGGCCTGTGACCACGGGGCACCAGCACCAGTTGGTGCTGCCCATGGCGTTGCCGTGCGGCGTGGGCTTGATGGATTTGTCATCGTGGCCACCAACCTGGTCCATGCATATGGAGCAGTGTCACAGGTTCCTTCTGCCCGTTCCATATTCGAGCTAATGCCAGATAGAAACACTGTCACTTGGAATACAATGCTTAATTGCTATGTCAAGGCAGGAATGATTAACATGGCTGCTGAGGTGTTCGGTGTGATCCCAGAGAGGGATGAGGTCTCTTGGTTGACAATGATAGATGGATATATGTGTGCGGATTTCCTACTGCAGGCTCTCAGGACATATGTTGCGATGGTGGGTACGGTGGGCATAAGGGCCAATGAGGTGATACTTGTTGGTTTGGTCAAGGCATGTTCTCGACATTCCGCTGTCTCAGAAGGGCAACAACTCCACACAGTCATTCTAAAGAATGGTTTTGACGCTCATGCATTTGTACAGGCTACCCTGATCCATTATTACGGGTCTTGTGATTTTATTGACCATGCCCAGATGCAATTCAAATTGTCAGACAAGTCACACGTAGCTTCCTGGAATGCCCTTATGGCTAGCCTACTAAGAAGGAATCTAGTGCATGAAGCAAGGCAGCTGTTCGATGACATGCCTGAGAGGGACACCATTTCTTGGAGTACATTGATATCTGGGTATGTCCAGAGTGGGAATTCAAACATGGCTTTGCAGATATTCTGTTCGATGCTAGATGCTGGTGTTGAACCTAATGAGATCACTTTAGCAAGTGCTCTGTCTGCAGTAGCCAATTCTGGCACCTTGGGGCAAGCAAGATGGATCCATGACTACATAATCAGCAGATCAATCCAGCTTACTGATAAACTGAGCGCTGGACTGATTAACGTGTATGCAAAGTGTGGTAGCATTGCTGAAGCAGTTCAGCTATTTAACCATGTTAAGGATAAGTCAATTTCAGTGTCTCCTTGGAATTCTATCATCTGTAATTTAGCTATCCATGGCTATGTGAACATGTCGCTGGAATTGTTTTCACAGTTGCAAAGCACCACCCATATTAAACCCAACTCAATCACATACCTTGGTGTGTTAAATGCATGTTGTCATGCTGGGATGGTAGCTGAGGGGAAGCGCCAATTTGAGTCCATGAGGCAACAATATGGAATCCAACCAGAAATTAAGCACTATGGTTGCATGGTCGATCTTCTTTGTCGAGCTGGGTATTTGGAAGAAGCAGAACTGCTTATTAAGACGATGCCAATGAAAGCTGATGTGGTAGCCTGGGGTTGTATCCTTGCAGCTGCAAGGACTCAAGGAAATGTAGCCTTAGGAGAAAAGGCTGCAGAAGAATTGTCAAAGCTTGACCCAAGCCATGGAGCATCCAAAATAGCCTTGTCAAACCTCTATGCTGATGCTGGTCATTGGAGCAATGTGTCAGTGGTGAGGAAGGAACTCCAGAATGAGAATTTGGAAAGACTTACAGGAAGCAGTGGAATTCTACAATTATAGGTTTCACTCTTTTGGTGACAACTGCAAAACTGCTCTTATGTCGGTGAACTAATTGCGACAAGCAGTTTATTTTCGTGCTTGATCTGTTCTGTTAGCCAACACATACAATCATTATTTTGCTCTTTTAGACTAAACAATATGTGAACTAAAGAATCTCTAACATGACATGGCAACTATTCATATTGGAAAGTTGATTGGCTGTTAGACTGCCAAGAAGATTAGCTGGAAAAGTAGATTAGCATCACTTATGGAGGTCCCCTTGGCCTTTGCCATGTTGTCATTTGGATAATTGCATCTCCGAACTTCGATATTCAGTGTTATAAGTGCTTAATTGACATGTCTGATAATTAATAATCCTAGGTCAGTGATGCCAGCATTCAGTCTTCGGTACATGTTTAGACTCTTTTACTTTTTAAGGTAAATGAATGACATCCATGTTCAATCGTACAAACATTGTAGTAATATGGCCAGTTCTAAGTGAATCTTTCTAGCATTGATAGTAGTTATTTGGTGCAGTTTGTATGTGAATACAGGACTACAAATATTAAGTACCACACATATTTTGTGTGCGCACGGTTTTGTTTCAGTTGCAAGATGCATTTTGAATTTGTAAAAAATTGGCTCAAACAATCTCACTTGAAAAGTTTGGAGATGTAATGAGATGTTCTGGGTACACAAAAAGAAAAGTTAAATTTAGTGTTAAGAGTGTGATTACTTGTGTTGTACAATAGACATGTCAATCATCCTATGCTCTTAAATCTTAATCCATGCTTTTTTAGTCCATACACCTTTATATTATTTAAATATTTTGACGATCATGTTATCTTTTGTAGGTTTTAGAAATATAGCTCCCTCAAGGAACAATAATTCTTATAGACTTTGACACAGTAGGGCATATTTCGGTCTTCAGCTTCACATATGAACATTAGGTTACAAGAAACTCAATTGTCAGGTAATATCTCATTATATAATGCATTTGTTATCCAATCTTGTATATGCTTTCTTTTATTCTAATACAAAGTTTTG
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| CDS seq | ATGACCACCCGCGCCGGCGCACCTCTCGCCGTCTTCCTCGTCTCGTCCCTCAAGTCGGCCGCCGCACGCCTCAGCCACGGCGAGCAGCTCCACGCGCTCGCTGCCAAGTCGGGCCTGCTCACCTCCAATCTTTTCGTCCGCAACTCCCTCCTCGCCTTCTACTCCCGCGTCGCCCCCAGCCTCGCCTACCACCTGTTCGATGAAATACCCCCGCTCCTCCGCGACGCCACCGCCCACAACATTCTCCTCTCCGCGCTCGCCCGCGCGGGCCGCCTCGAACGCGCGCAGTGCCTGCTCGCGGAGATGCCTCAGAGGGACGCGGTCTCGTTCACCACTGTCATTTCCGCCCTCTCGCGCTCCGGTCATCCTGAGCGCGCCCTGGCCGTCTTCCGCGATATGCTCACCGAGGCCGTGCAGCCCAACGAGGTTACACTTGCGGAAGTGCTCACGGCGATGGCCTGTGACCACGGGGCACCAGCACCAGTTGGTGCTGCCCATGGCGTTGCCGTGCGGCGTGGGCTTGATGGATTTGTCATCGTGGCCACCAACCTGGTCCATGCATATGGAGCAGTGTCACAGGTTCCTTCTGCCCGTTCCATATTCGAGCTAATGCCAGATAGAAACACTGTCACTTGGAATACAATGCTTAATTGCTATGTCAAGGCAGGAATGATTAACATGGCTGCTGAGGTGTTCGGTGTGATCCCAGAGAGGGATGAGGTCTCTTGGTTGACAATGATAGATGGATATATGTGTGCGGATTTCCTACTGCAGGCTCTCAGGACATATGTTGCGATGGTGGGTACGGTGGGCATAAGGGCCAATGAGGTGATACTTGTTGGTTTGGTCAAGGCATGTTCTCGACATTCCGCTGTCTCAGAAGGGCAACAACTCCACACAGTCATTCTAAAGAATGGTTTTGACGCTCATGCATTTGTACAGGCTACCCTGATCCATTATTACGGGTCTTGTGATTTTATTGACCATGCCCAGATGCAATTCAAATTGTCAGACAAGTCACACGTAGCTTCCTGGAATGCCCTTATGGCTAGCCTACTAAGAAGGAATCTAGTGCATGAAGCAAGGCAGCTGTTCGATGACATGCCTGAGAGGGACACCATTTCTTGGAGTACATTGATATCTGGGTATGTCCAGAGTGGGAATTCAAACATGGCTTTGCAGATATTCTGTTCGATGCTAGATGCTGGTGTTGAACCTAATGAGATCACTTTAGCAAGTGCTCTGTCTGCAGTAGCCAATTCTGGCACCTTGGGGCAAGCAAGATGGATCCATGACTACATAATCAGCAGATCAATCCAGCTTACTGATAAACTGAGCGCTGGACTGATTAACGTGTATGCAAAGTGTGGTAGCATTGCTGAAGCAGTTCAGCTATTTAACCATGTTAAGGATAAGTCAATTTCAGTGTCTCCTTGGAATTCTATCATCTGTAATTTAGCTATCCATGGCTATGTGAACATGTCGCTGGAATTGTTTTCACAGTTGCAAAGCACCACCCATATTAAACCCAACTCAATCACATACCTTGGTGTGTTAAATGCATGTTGTCATGCTGGGATGGTAGCTGAGGGGAAGCGCCAATTTGAGTCCATGAGGCAACAATATGGAATCCAACCAGAAATTAAGCACTATGGTTGCATGGTCGATCTTCTTTGTCGAGCTGGGTATTTGGAAGAAGCAGAACTGCTTATTAAGACGATGCCAATGAAAGCTGATGTGGTAGCCTGGGGTTGTATCCTTGCAGCTGCAAGGACTCAAGGAAATGTAGCCTTAGGAGAAAAGGCTGCAGAAGAATTGTCAAAGCTTGACCCAAGCCATGGAGCATCCAAAATAGCCTTGTCAAACCTCTATGCTGATGCTGGTCATTGGAGCAATGTGTCAGTGGTGAGGAAGGAACTCCAGAATGAGAATTTGGAAAGACTTACAGGAAGCAGTGGAATTCTACAATTATAG
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| Protein seq | MTTRAGAPLAVFLVSSLKSAAARLSHGEQLHALAAKSGLLTSNLFVRNSLLAFYSRVAPSLAYHLFDEIPPLLRDATAHNILLSALARAGRLERAQCLLAEMPQRDAVSFTTVISALSRSGHPERALAVFRDMLTEAVQPNEVTLAEVLTAMACDHGAPAPVGAAHGVAVRRGLDGFVIVATNLVHAYGAVSQVPSARSIFELMPDRNTVTWNTMLNCYVKAGMINMAAEVFGVIPERDEVSWLTMIDGYMCADFLLQALRTYVAMVGTVGIRANEVILVGLVKACSRHSAVSEGQQLHTVILKNGFDAHAFVQATLIHYYGSCDFIDHAQMQFKLSDKSHVASWNALMASLLRRNLVHEARQLFDDMPERDTISWSTLISGYVQSGNSNMALQIFCSMLDAGVEPNEITLASALSAVANSGTLGQARWIHDYIISRSIQLTDKLSAGLINVYAKCGSIAEAVQLFNHVKDKSISVSPWNSIICNLAIHGYVNMSLELFSQLQSTTHIKPNSITYLGVLNACCHAGMVAEGKRQFESMRQQYGIQPEIKHYGCMVDLLCRAGYLEEAELLIKTMPMKADVVAWGCILAAARTQGNVALGEKAAEELSKLDPSHGASKIALSNLYADAGHWSNVSVVRKELQNENLERLTGSSGILQL |
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| Function | Pentatricopeptide repeat-containing protein At5g19020, mitochondrial [UniProtKB/Swiss-Prot:P0C8Q8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_01G017880 | OsN22_01G017880_01 | Chr01 | 16970917 | 16974082 | + | NAM | ||
| CDS seq | ATGACCACCCGCGCCGGCGCACCTCTCGCCGTCTTCCTCGTCTCGTCCCTCAAGTCGGCCGCCGCACGCCTCAGCCACGGCGAGCAGCTCCACGCGCTCGCTGCCAAGTCGGGCCTGCTCACCTCCAATCTTTTCGTCCGCAACTCCCTCCTCGCCTTCTACTCCCGCGTCGCCCCCAGCCTCGCCTACCACCTGTTCGATGAAATACCCCCGCTCCTCCGCGACGCCACCGCCCACAACATTCTCCTCTCCGCGCTCGCCCGCGCGGGCCGCCTCGAACGCGCGCAGTGCCTGCTCGCGGAGATGCCTCAGAGGGACGCGGTCTCGTTCACCACTGTCATTTCCGCCCTCTCGCGCTCCGGTCATCCTGAGCGCGCCCTGGCCGTCTTCCGCGATATGCTCACCGAGGCCGTGCAGCCCAACGAGGTTACACTTGCGGAAGTGCTCACGGCGATGGCCTGTGACCACGGGGCACCAGCACCAGTTGGTGCTGCCCATGGCGTTGCCGTGCGGCGTGGGCTTGATGGATTTGTCATCGTGGCCACCAACCTGGTCCATGCATATGGAGCAGTGTCACAGGTTCCTTCTGCCCGTTCCATATTCGAGCTAATGCCAGATAGAAACACTGTCACTTGGAATACAATGCTTAATTGCTATGTCAAGGCAGGAATGATTAACATGGCTGCTGAGGTGTTCGGTGTGATCCCAGAGAGGGATGAGGTCTCTTGGTTGACAATGATAGATGGATATATGTGTGCGGATTTCCTACTGCAGGCTCTCAGGACATATGTTGCGATGGTGGGTACGGTGGGCATAAGGGCCAATGAGGTGATACTTGTTGGTTTGGTCAAGGCATGTTCTCGACATTCCGCTGTCTCAGAAGGGCAACAACTCCACACAGTCATTCTAAAGAATGGTTTTGACGCTCATGCATTTGTACAGGCTACCCTGATCCATTATTACGGGTCTTGTGATTTTATTGACCATGCCCAGATGCAATTCAAATTGTCAGACAAGTCACACGTAGCTTCCTGGAATGCCCTTATGGCTAGCCTACTAAGAAGGAATCTAGTGCATGAAGCAAGGCAGCTGTTCGATGACATGCCTGAGAGGGACACCATTTCTTGGAGTACATTGATATCTGGGTATGTCCAGAGTGGGAATTCAAACATGGCTTTGCAGATATTCTGTTCGATGCTAGATGCTGGTGTTGAACCTAATGAGATCACTTTAGCAAGTGCTCTGTCTGCAGTAGCCAATTCTGGCACCTTGGGGCAAGCAAGATGGATCCATGACTACATAATCAGCAGATCAATCCAGCTTACTGATAAACTGAGCGCTGGACTGATTAACGTGTATGCAAAGTGTGGTAGCATTGCTGAAGCAGTTCAGCTATTTAACCATGTTAAGGATAAGTCAATTTCAGTGTCTCCTTGGAATTCTATCATCTGTAATTTAGCTATCCATGGCTATGTGAACATGTCGCTGGAATTGTTTTCACAGTTGCAAAGCACCACCCATATTAAACCCAACTCAATCACATACCTTGGTGTGTTAAATGCATGTTGTCATGCTGGGATGGTAGCTGAGGGGAAGCGCCAATTTGAGTCCATGAGGCAACAATATGGAATCCAACCAGAAATTAAGCACTATGGTTGCATGGTCGATCTTCTTTGTCGAGCTGGGTATTTGGAAGAAGCAGAACTGCTTATTAAGACGATGCCAATGAAAGCTGATGTGGTAGCCTGGGGTTGTATCCTTGCAGCTGCAAGGACTCAAGGAAATGTAGCCTTAGGAGAAAAGGCTGCAGAAGAATTGTCAAAGCTTGACCCAAGCCATGGAGCATCCAAAATAGCCTTGTCAAACCTCTATGCTGATGCTGGTCATTGGAGCAATGTGTCAGTGGTGAGGAAGGAACTCCAGAATGAGAATTTGGAAAGACTTACAGGAAGCAGTGGAATTCTACAATTATAG
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| Protein seq | MTTRAGAPLAVFLVSSLKSAAARLSHGEQLHALAAKSGLLTSNLFVRNSLLAFYSRVAPSLAYHLFDEIPPLLRDATAHNILLSALARAGRLERAQCLLAEMPQRDAVSFTTVISALSRSGHPERALAVFRDMLTEAVQPNEVTLAEVLTAMACDHGAPAPVGAAHGVAVRRGLDGFVIVATNLVHAYGAVSQVPSARSIFELMPDRNTVTWNTMLNCYVKAGMINMAAEVFGVIPERDEVSWLTMIDGYMCADFLLQALRTYVAMVGTVGIRANEVILVGLVKACSRHSAVSEGQQLHTVILKNGFDAHAFVQATLIHYYGSCDFIDHAQMQFKLSDKSHVASWNALMASLLRRNLVHEARQLFDDMPERDTISWSTLISGYVQSGNSNMALQIFCSMLDAGVEPNEITLASALSAVANSGTLGQARWIHDYIISRSIQLTDKLSAGLINVYAKCGSIAEAVQLFNHVKDKSISVSPWNSIICNLAIHGYVNMSLELFSQLQSTTHIKPNSITYLGVLNACCHAGMVAEGKRQFESMRQQYGIQPEIKHYGCMVDLLCRAGYLEEAELLIKTMPMKADVVAWGCILAAARTQGNVALGEKAAEELSKLDPSHGASKIALSNLYADAGHWSNVSVVRKELQNENLERLTGSSGILQL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.393422 | 0.000000 | 0.514854 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0390600 | RBH | 0.973863 | 0.369960 | 0.326074 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g29430 | RBH | 0.757395 | 0.269619 | 0.083785 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0390600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0018220 | RBH | 0.522216 | 0.954229 | 1.841833 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0017890 | RBH | 0.093429 | 0.782112 | 0.345740 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0018140 | RBH | 0.571501 | 1.213388 | 0.523423 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0017500 | RBH | 0.051864 | 0.021450 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0017440 | RBH | 2.282743 | 1.791688 | 2.552883 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0278400 | RBH | 1.3507705 | 8.6929535 | 3.055223 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0017540 | RBH | 0.105628 | 0.0 | 0.131560 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0276500 | RBH | 1.613506 | 13.080957 | 5.8307345 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0017430 | RBH | 0.120401 | 0.394301 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0017420 | RBH | 0.305456 | 4.939878 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0017670 | RBH | 3.420841 | 6.850247 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0017390 | RBH | 0.332474 | 0.347240 | 0.250861 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0017280 | RBH | 0.000000 | 0.756363 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0017510 | RBH | 1.133175 | 5.654695 | 2.327584 |
