Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_01G016470 | OGI:01045310 | 16/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr01:15154924-15158449 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCATAATTATACTATAATCACATTCCAGCCATAATTAATTTTCTAGCCCATACAAAAGCAAGTTTCAGAATACAGTTTCCAACATGTTCCATACAAAAGAACGAAACATGAATACAAAATGTTCCATCCACCATCCAACTACACAAGTCCCAGCCGACTACGAAGTTCCTACAGGAAGTGTCAAGTTCCTGCACCAAAAAAATTCCACCTAGCAGCCACTACTAAGTTTCGGCGTTCATCTTGCCAGCAGCCAGGAAAAAAATTCCACCAAGCAGCCACCGCACTTCCGGCCTGCATCCTGCCAGCTGCCAGCAACTAGTGCCAAAAAATCCTGTTTTCCAGCAACCAACGCAAAAAAAACTCCGGCCACCAAAAGCGCCAACCTGCAAGCAACCAGTAGCTAGCACCAAGTTCTAGCAGCCACATACACCATACAATAGCAGCCACATACACCAAGTTCTGAAGTACCAAAAGCGATCACAGCCTCGAAGTTCAACTACACTAACACGAGCCATCAAATTCCAAGCTCAGCCACCTCATTCCTGCCATCAAAAGGTGCATGTTTTCAGTTGCTGGTGAATAAAAAGTCCATTTTGTTTGGACTTGGAGGCAAACAAATGAACAAATAGTGTTTAGAGTAATAACCCAGCAGGTAAATTGAGTAATAACAATATATTGATATGGCTCTTTTCCATAAAGTCCAAACAAATGGCTCTTTTCTAGTCACAACTAAATCCAAACAATGGTTCTTTTGCAGCTAATAATCCAGAAAAAATAGAGTATCTAGATCGATCAATCAAATGGCTCTTTTCCAGTCACAACTAAACAATATCTAATTTCATAGTAACAACAACTATAAACAATCCAGCAAGTAAATTGAAATAGGCAGAGTAATAGGCAATTTTGATACACACCATGAACAAAAAATTCAGCCACCAATGAAACAGTACAATAGGCTTGATATGGATGCAAAAGCACAAGAGACAAGTTAAAGCTATGCACCTGAGCATACAACTAGCTTAGGGAGGACTGATCTGACCCTGTCCAAATGCCATCATTTGTCGAAGGAGGCCCTGATGATGAAGTGAGGGCTTCCCGGGCATGCATATCCTCCTAGCAATCAAAGCAAGGTTTCAGTTTTGTATTATTATATAAATAAAGGTTCATTGCATAAGTTACTTAATAAAAGAAGGAAAGAAGATGTAATAGTTCAGTACTTACTATAGCTTTCTTCACAGGTTCACTAAAACCTTTAGTTTTGCTGCAATGCAACTCATTAAAGAGATCAATTGCAGTGGGCTCACCGTCAATTGCAGTACCCATGCTCTTCCCCCTTGGCTCCACTTGTCTACTGCCAGTGAGGGTGCCTAACCTAAAACATTTACAAGTGTCAATAAAAAGATTCTGCACTTGATATGAAGGCATAACACATGTAAGGACAAAAGAACAAGAATCCAAGTTACTTGCCTTGTTCAGTAGAGCTCAATCCCATTGGCTCCAGTTCTGTACTTAAAGTGAGGTCGCTCAATCCCATTGCCGCCGCCCAATATGGCCACCCAGGGCAAAGGCCACATCTGCGGCGCAAGGAAGGGTTGAGGATGATGGCTAGCTGTGGCGTGCCCTGGTTGGGGCTCCACCCGCCGATGCTCACCAGCGCCACCGGATCTTGCAGTCCCGAGGCCCTCATTCCTATAGTCACATTCTGCAAGACAGATGAAGAAAGGATCAGAAGAAAAGATCAGAACATTGCATTAGAGTTGCAGAAGCTTGTGACTAGTAACTGTTTTTGCTAGGCAAATCTGTGAGTTGAGTGATTTTAAGGAACATATACTCTTTGAGCAAGTTTATAGCCAATTTAGTAAAAATCTCACATCTTATTTACATTCTTACGGGGATATTTCTGTGACAGACATTATATTGGATTATAGAAGGAATCAAAGAGATGCTAGCCATGACCTTTCTTCTCAGGAGGTGATGCTTCCCTTTTACCAGTGACATTTTCTGCTTTATGAACTACAGACTGAGGGGGAGATGCAGCAGTAGCTTCCCTTCCTACTTCAACTACCAACTGCACTAAAGGATCCAAGCTAGAAAAAATTTCTTCCTTGGAGATATCATGATCTATATACTTGGATTGAACTGAGTTCATATTAATGCTACCACACCTAACATTAATAAAAAAGAAGGTGTTTGTTTTTCAAGAAGAATGCATGTGGTAAGTTTGGTACAGAGTAGAGATCAAAACAGTAAACAGCAGCTGTGATCGGTTGGGCAGGCATAAACATCTTCCTAATTATAATTAGTTAACCATGCATTTTTGAAACACGGTTTCTTTCTAGACCAAGTCAAACTCTGACCCAAACTAACTCTTTGGATTATTTTAGTTATTAAATGTAGAAAAGCTATATTAAATAGGTAGTTGCCTCCCTACTTTCCCAGTGAACATTGTTAAACCCACAAGTCAAACATGGATCACCCATATTTTGTTAAAGAAACTATGCAATTTAGCACGCTTGACCTAAGAAGCTAAGACCAATCCTTGATAATACTAACATGCCTAACCATGCTCCTAATGCTTACCACTCCAAATTCAAGTATGAAAGCTATTTTGTTATGTAACCTAAAAATAATTTCGAACTTGAGAATCATCGATATCGACACTAGAATACAAGAAGAGAGAAGCTTATAAATTTTAAGTACTAATTATGACTGTCAGAAACAATCAGAACTAATTACTGCTCTAATTTTCACAAAGGAAGGATCAATAGGAGAATGGAAAAAAAATTGCTAATCACTACTCCATTTCAAGACTGATTCACACGAAAAACTGTCTACGAGAGAGGTTGTGAATCCTGCAAAACTGAATCCTCTACTCGTCGTCTTTATCTCGGCTACAAATCACTCCAGCAGCAGCAGCAATCAAGCACCAACAGAATACCCCAATAAACCACCAGATCTGGTGAAAGCAACACATCAACCGCACGGATCCGCGAAAGCCAGCATCTCTTCTACCGATTTCCCAACTCGACAAGGGAGATGTTACCCTCACCCAGATCCCGACGCGCCGCTGGCCTGCTGCCCTGCACCCTTGCCCCGTGCCGCGTGCCCCCGCGGCCCGCGCCACCTGCCCGCCTCTCGATTGCAAGTCGCCGGCCGCCGCTGGTCATCGTCATCGTCATCGTCGCAGCTAGCGTCGCCGCTGTCGTCGCCGTCGTTGCAGCCACTGTAGCTGTCGTCGCCGCAGCCGCCGCCGCCGTAGCCGCTCGCTCCCGCCTACCTAAGCCCGCCGCCGCCGCTCCGGAGGGCGGAGGTGGGTGGATCCGTGTGTTGCCGGTGCTCCCGCTCACGCCAGGCCGCTCCCGAGTACGGAGGCCACTGGATTCATGCGCCGCCGTCACTCCCGAGGACGGGAGGCGGCGAATCCGCTCGCCACCGTCCTTCCCTGGCCGGGGGAGCGACACGGGGAAAGGCGAAGAGGTGGCTGGGGGCGGCGCGATGGATTGAGGAGGAGAGGGATGTTGGCGGT
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| CDS seq | CGCCAACATCCCTCTCCTCCTCAATCCATCGCGCCGCCCCCAGCCACCTCTTCGCCTTTCCCCGTGTCGCTCCCCCGGCCAGGGAAGGACGGTGGCGAGCGGATTCGCCGCCTCCCGTCCTCGGGAGTGACGGCGGCGCATGAATCCAGTGGCCTCCGTACTCGGGAGCGGCCTGGCGTGAGCGGGAGCACCGGCAACACACGGATCCACCCACCTCCGCCCTCCGGAGCGGCGGCGGCGGGCTTAGGTAGGCGGGAGCGAGCGGCTACGGCGGCGGCGGCTGCGGCGACGACAGCTACAGTGGCTGCAACGACGGCGACGACAGCGGCGACGCTAGCTGCGACGATGACGATGACGATGACCAGCGGCGGCCGGCGACTTGCAATCGAGAGGCGGGCAGGTGGCGCGGGCCGCGGGGGCACGCGGCACGGGGCAAGGGTGCAGGGCAGCAGGCCAGCGGCGCGTCGGGATCTGGAATGTGACTATAGGAATGAGGGCCTCGGGACTGCAAGATCCGGTGGCGCTGGTGAGCATCGGCGGGTGGAGCCCCAACCAGGGCACGCCACAGCTAGCCATCATCCTCAACCCTTCCTTGCGCCGCAGATGTGGCCTTTGCCCTGGGTGGCCATATTGGGCGGCGGCAATGGGATTGAGCGACCTCACTTTAAGTACAGAACTGGAGCCAATGGGATTGAGCTC
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| Protein seq | RQHPSPPQSIAPPPATSSPFPVSLPRPGKDGGERIRRLPSSGVTAAHESSGLRTRERPGVSGSTGNTRIHPPPPSGAAAAGLGRRERAATAAAAAATTATVAATTATTAATLAATMTMTMTSGGRRLAIERRAGGAGRGGTRHGARVQGSRPAARRDLECDYRNEGLGTARSGGAGEHRRVEPQPGHATASHHPQPFLAPQMWPLPWVAILGGGNGIERPHFKYRTGANGIEL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_01G016470 | OsN22_01G016470_01 | Chr01 | 15155938 | 15157572 | - | NAM | ||
| CDS seq | ATGATTCTCAAGTTCGAAATTATTTTTAGGTTACATAACAAAATAGCTTTCATACTTGAATTTGGAGTGAATGTGACTATAGGAATGAGGGCCTCGGGACTGCAAGATCCGGTGGCGCTGGTGAGCATCGGCGGGTGGAGCCCCAACCAGGGCACGCCACAGCTAGCCATCATCCTCAACCCTTCCTTGCGCCGCAGATGTGGCCTTTGCCCTGGGTGGCCATATTGGGCGGCGGCAATGGGATTGAGCGACCTCACTTTAAGTACAGAACTGGAGCCAATGGGATTGAGCTCTACTGAACAAGGCAAGTTAGGCACCCTCACTGGCAGTAGACAAGTGGAGCCAAGGGGGAAGAGCATGGGTACTGCAATTGACGGTGAGCCCACTGCAATTGATCTCTTTAATGAGTTGCATTGCAGCAAAACTAAAGGTTTTAGTGAACCTGTGAAGAAAGCTATAGAGGATATGCATGCCCGGGAAGCCCTCACTTCATCATCAGGGCCTCCTTCGACAAATGATGGCATTTGGACAGGGTCAGATCAGTCCTCCCTAAGCTAG
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| Protein seq | MILKFEIIFRLHNKIAFILEFGVNVTIGMRASGLQDPVALVSIGGWSPNQGTPQLAIILNPSLRRRCGLCPGWPYWAAAMGLSDLTLSTELEPMGLSSTEQGKLGTLTGSRQVEPRGKSMGTAIDGEPTAIDLFNELHCSKTKGFSEPVKKAIEDMHAREALTSSSGPPSTNDGIWTGSDQSSLS |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_01G016470 | OsN22_01G016470_02 | Chr01 | 15154924 | 15158449 | - | IsoSeq | ||
| CDS seq | CGCCAACATCCCTCTCCTCCTCAATCCATCGCGCCGCCCCCAGCCACCTCTTCGCCTTTCCCCGTGTCGCTCCCCCGGCCAGGGAAGGACGGTGGCGAGCGGATTCGCCGCCTCCCGTCCTCGGGAGTGACGGCGGCGCATGAATCCAGTGGCCTCCGTACTCGGGAGCGGCCTGGCGTGAGCGGGAGCACCGGCAACACACGGATCCACCCACCTCCGCCCTCCGGAGCGGCGGCGGCGGGCTTAGGTAGGCGGGAGCGAGCGGCTACGGCGGCGGCGGCTGCGGCGACGACAGCTACAGTGGCTGCAACGACGGCGACGACAGCGGCGACGCTAGCTGCGACGATGACGATGACGATGACCAGCGGCGGCCGGCGACTTGCAATCGAGAGGCGGGCAGGTGGCGCGGGCCGCGGGGGCACGCGGCACGGGGCAAGGGTGCAGGGCAGCAGGCCAGCGGCGCGTCGGGATCTGGAATGTGACTATAGGAATGAGGGCCTCGGGACTGCAAGATCCGGTGGCGCTGGTGAGCATCGGCGGGTGGAGCCCCAACCAGGGCACGCCACAGCTAGCCATCATCCTCAACCCTTCCTTGCGCCGCAGATGTGGCCTTTGCCCTGGGTGGCCATATTGGGCGGCGGCAATGGGATTGAGCGACCTCACTTTAAGTACAGAACTGGAGCCAATGGGATTGAGCTC
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| Protein seq | RQHPSPPQSIAPPPATSSPFPVSLPRPGKDGGERIRRLPSSGVTAAHESSGLRTRERPGVSGSTGNTRIHPPPPSGAAAAGLGRRERAATAAAAAATTATVAATTATTAATLAATMTMTMTSGGRRLAIERRAGGAGRGGTRHGARVQGSRPAARRDLECDYRNEGLGTARSGGAGEHRRVEPQPGHATASHHPQPFLAPQMWPLPWVAILGGGNGIERPHFKYRTGANGIEL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr01 | 15156036 | 15156228 | - | OsN22_01G016470_01 | OsN22_01G016470_01,OsN22_01G016470_02 | All |
| A5 | Chr01 | 15156295 | 15156391 | - | OsN22_01G016470_01 | OsN22_01G016470_01,OsN22_01G016470_02 | All |
| AF | Chr01 | 15156625 | 15158449 | - | OsN22_01G016470_01 | OsN22_01G016470_01,OsN22_01G016470_02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.351791 | 5.049081 | 6.596227 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g25920 | RBH | 6.298401 | 5.608368 | 0.714257 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0016820 | RBH | 1.975120 | 12.738511 | 14.234734 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0248000 | RBH | 0.0165625 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0243200 | SBH | 0.007494 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0016250 | SBH | 0.0 | 0.0 | 0.0 |
