Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_01G015020 | OGI:01038510 | 15/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr01:12936331-12939058 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCCTCCTCTTCTCAGTCAGAGGTGAGCCCCCTCCTGTGACCCCTCCAATGCCGTTCACATGATCTCACTCTCTCTCGCTCTCACTGTCACACACATTGAGCAGTGTGACTCAGTGAGCCACCTCTGCCTTTTTACATGACCATGCTGCTCTTGTCCTAGCTGCACATTTCACACTTCACATGGCAACAGAAGCAGCAGCAACAGCAAGATGGCTTCTTCTTCCTCTTCTTTCTCCTCTCCAATCTCCACACAAGCAGCAGCAACTCATCTTTGCTGCTCTTCTCCTTCTCTTCTTCTTCTCTTCACTCCAGAGTTTGCACTGCTATGCTGCTGCTGGTTACAATGAGCAGCAGGAAGCTGATAGGGTGGCCTTCCTCCCCGGGCAGCCAAGCAGCCCGAAGGTCTCTCAGTTCTCAGGCTACATCACTGTGAACAGGCAGAATGGCAGGGCACTCTTCTACTGGTTCTTTGAGGCCCAGGCACTGCCCTCTCAGAAGCCTCTCCTGCTCTGGCTCAATGGAGGTTGTGCAATAATGTCTGAATCATTTACTTCTGCAATAGAAATGTGAACTTTTTGGTACACATTTGTTACATGAGTGCATATGTGCATGCAGGGCCAGGTTGCTCATCAGTTGGATATGGAGCTGCCTCTGAACTAGGGCCCCTCAGAGTTAGCAGAAATGGAGCTGGGCTTGAGTTCAACAAATTTGCATGGAACAAAGGTTGTGCAAAAACTAAGCATTTTTGTTTCTTATAATTGTTCCAATTGGTTTGAGCAAATTAATAAAATGCTATACGCATGTCACTGTTTTTCACATTGTTCTTGCCAGAGGCCAATTTGCTGTTCTTGGAGTCCCCAGTTGGGGTTGGCTTCTCCTACACCAACACATCCTCTGACCTCACCAAACTGAATGATGGTTTTGTAGGTAATTCAGTATTGTTATTGGTAAAGTATATTTTTCTTGACCATTGTTTGTCACATTTGAGATGTTTTTGGCGCCTTCCTTGTAGCCGAGGACGCATATAATTTCCTGGTAAATTGGTTGGACAGATTTCCACAGTACAAAGACCATGAATTCTATATTTCAGGAGAGAGCTATGCAGGTAATTCTTCACATGAACATGAAAGTCGTCTCTTGCCCCCTTGGCCTTCTTTTTGTTGTTTTGATTAGAACAACCAACCTTGAAATTGTAGCCTACATGTCTGAAAAGGTTCAGGAAATGATGCTAATGCATCAAATTCAGATTATAGTTGACCTTTCCAATTAGGAATTTATTAGTAATACTTGTATCTATTCCGTAATAACCATGAATTGGCTTTGAGATAAACTAATTCAAATTTTTACTAGATTTGAGCCAATAGTTCAGATTATGCATATAAGATAGTTTGCTGAGCCCTAATATGTCTACTACAAGTTTCTAGAAGTTCAAAATTTTAATTGCAGGTAATATAGTGATCTGTCCTGTAACCATAAAAAAAAAGCATATTTAGGTGCTTAGGAAGAAGGATATCATAATCTGTGAAAATAGAAGCAAAGTGAATATGTCCTGGTTAACATCATGACTTGACATCATTTTCATACTATTTAGATATGAAGGCGTGTCCTCATTTTCCAAAATGAAATGTTTCATTCCTGCAAGATCCTCATCCCATTGAGCACTACTAGTGGTATTGACTGGTCATACTAGAATTATGTGATATCTCATATGCGGTAGTAAAAAAGATGCCCTATAATTCCTTTTCCCTGTACATCACCAACAAGAATTTTCGAATTAATGCAGGTCACTATGTGCCACAGCTTGCAGACCTTGTCTATGAGAGGAACAAAGACAAGAAGGCCAACAGATATATCAAACTGAAAGGGTTCATTGTGAGTACATCCATTCACTGATTAGTTTGCCAGTATTGCTGGTTTGGCTTCATTCTTTCATATTTCAAAACTGGATGGCAATATTATTTGGTAAAGTCCATTTTAATGGACTCAAAAACTCTTCGTTAAGAATCCGAGAGCTGAAAGTACATTTCACCTATAATATTTTAGCAACATATTGACAGTAATGATGATGCTTTTTCTAGATAATGGTCTTTAATTTAGATAAAAATCAGTGGACATCAGAAAAGAGCATTTCATCTATTATTGAAGGTCCAACAGGAAAAATAAAATCTTGTAGTTCTCGAAATAAGTTCTAAACTTTCTGGAATCATAACATTGTACTTGGGCCCAAATACAGGTTGGTAATCCACTTACTGATGATCAGTACGACTCAAAAGGTCTTGTTGAATATGCTTGGAGCCACGCAGTTGTGTCAGATGGAATTTATGAGCGCGTCAAGAAGGTGTGCAACTTCAAGATCTCAAACTGGACGAATGATTGCAATGAAGCCATGAGTAGTGTTTTCAGACAATACCAAGAGATTGACATCTACAATATCTATGCACCCAAGTGCAATCTTGCTCAAACATCAAGAGTAGCTGCTTTCGATCACGCACTCGAAGCAAGCGATCAGGTAGATGACAAATAGTTCAAATTAGTTCTGCTTCTGAAATTCTAAGGCTTGTTGTTTGACTTGGTAGGAACAATTCAGTAGGAGGATTAGGATGTTCTCAGGATATGACGCGTGCTACTCATCATATGCTGAGAAGTACTTCAACAAGCCAGACGTGCAGAAAGCATTCCATGCAAATGCAAATGGGATGCTCCCTGGAAAATGGAAGGTTTGCAGGTGA
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| CDS seq | ATGGCAACAGAAGCAGCAGCAACAGCAAGATGGCTTCTTCTTCCTCTTCTTTCTCCTCTCCAATCTCCACACAAGCAGCAGCAACTCATCTTTGCTGCTCTTCTCCTTCTCTTCTTCTTCTCTTCACTCCAGAGTTTGCACTGCTATGCTGCTGCTGGTTACAATGAGCAGCAGGAAGCTGATAGGGTGGCCTTCCTCCCCGGGCAGCCAAGCAGCCCGAAGGTCTCTCAGTTCTCAGGCTACATCACTGTGAACAGGCAGAATGGCAGGGCACTCTTCTACTGGTTCTTTGAGGCCCAGGCACTGCCCTCTCAGAAGCCTCTCCTGCTCTGGCTCAATGGAGGGCCAGGTTGCTCATCAGTTGGATATGGAGCTGCCTCTGAACTAGGGCCCCTCAGAGTTAGCAGAAATGGAGCTGGGCTTGAGTTCAACAAATTTGCATGGAACAAAGAGGCCAATTTGCTGTTCTTGGAGTCCCCAGTTGGGGTTGGCTTCTCCTACACCAACACATCCTCTGACCTCACCAAACTGAATGATGGTTTTGTAGCCGAGGACGCATATAATTTCCTGGTAAATTGGTTGGACAGATTTCCACAGTACAAAGACCATGAATTCTATATTTCAGGAGAGAGCTATGCAGGTCACTATGTGCCACAGCTTGCAGACCTTGTCTATGAGAGGAACAAAGACAAGAAGGCCAACAGATATATCAAACTGAAAGGGTTCATTGTTGGTAATCCACTTACTGATGATCAGTACGACTCAAAAGGTCTTGTTGAATATGCTTGGAGCCACGCAGTTGTGTCAGATGGAATTTATGAGCGCGTCAAGAAGGTGTGCAACTTCAAGATCTCAAACTGGACGAATGATTGCAATGAAGCCATGAGTAGTGTTTTCAGACAATACCAAGAGATTGACATCTACAATATCTATGCACCCAAGTGCAATCTTGCTCAAACATCAAGAGTAGCTGCTTTCGATCACGCACTCGAAGCAAGCGATCAGGAACAATTCAGTAGGAGGATTAGGATGTTCTCAGGATATGACGCGTGCTACTCATCATATGCTGAGAAGTACTTCAACAAGCCAGACGTGCAGAAAGCATTCCATGCAAATGCAAATGGGATGCTCCCTGGAAAATGGAAGGTTTGCAGGTGA
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| Protein seq | MATEAAATARWLLLPLLSPLQSPHKQQQLIFAALLLLFFFSSLQSLHCYAAAGYNEQQEADRVAFLPGQPSSPKVSQFSGYITVNRQNGRALFYWFFEAQALPSQKPLLLWLNGGPGCSSVGYGAASELGPLRVSRNGAGLEFNKFAWNKEANLLFLESPVGVGFSYTNTSSDLTKLNDGFVAEDAYNFLVNWLDRFPQYKDHEFYISGESYAGHYVPQLADLVYERNKDKKANRYIKLKGFIVGNPLTDDQYDSKGLVEYAWSHAVVSDGIYERVKKVCNFKISNWTNDCNEAMSSVFRQYQEIDIYNIYAPKCNLAQTSRVAAFDHALEASDQEQFSRRIRMFSGYDACYSSYAEKYFNKPDVQKAFHANANGMLPGKWKVCR |
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| Function | Serine carboxypeptidase-like 26 [UniProtKB/Swiss-Prot:Q5W727] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_01G015020 | OsN22_01G015020_01 | Chr01 | 12936331 | 12939058 | + | NAM | ||
| CDS seq | ATGGCAACAGAAGCAGCAGCAACAGCAAGATGGCTTCTTCTTCCTCTTCTTTCTCCTCTCCAATCTCCACACAAGCAGCAGCAACTCATCTTTGCTGCTCTTCTCCTTCTCTTCTTCTTCTCTTCACTCCAGAGTTTGCACTGCTATGCTGCTGCTGGTTACAATGAGCAGCAGGAAGCTGATAGGGTGGCCTTCCTCCCCGGGCAGCCAAGCAGCCCGAAGGTCTCTCAGTTCTCAGGCTACATCACTGTGAACAGGCAGAATGGCAGGGCACTCTTCTACTGGTTCTTTGAGGCCCAGGCACTGCCCTCTCAGAAGCCTCTCCTGCTCTGGCTCAATGGAGGGCCAGGTTGCTCATCAGTTGGATATGGAGCTGCCTCTGAACTAGGGCCCCTCAGAGTTAGCAGAAATGGAGCTGGGCTTGAGTTCAACAAATTTGCATGGAACAAAGAGGCCAATTTGCTGTTCTTGGAGTCCCCAGTTGGGGTTGGCTTCTCCTACACCAACACATCCTCTGACCTCACCAAACTGAATGATGGTTTTGTAGCCGAGGACGCATATAATTTCCTGGTAAATTGGTTGGACAGATTTCCACAGTACAAAGACCATGAATTCTATATTTCAGGAGAGAGCTATGCAGGTCACTATGTGCCACAGCTTGCAGACCTTGTCTATGAGAGGAACAAAGACAAGAAGGCCAACAGATATATCAAACTGAAAGGGTTCATTGTTGGTAATCCACTTACTGATGATCAGTACGACTCAAAAGGTCTTGTTGAATATGCTTGGAGCCACGCAGTTGTGTCAGATGGAATTTATGAGCGCGTCAAGAAGGTGTGCAACTTCAAGATCTCAAACTGGACGAATGATTGCAATGAAGCCATGAGTAGTGTTTTCAGACAATACCAAGAGATTGACATCTACAATATCTATGCACCCAAGTGCAATCTTGCTCAAACATCAAGAGTAGCTGCTTTCGATCACGCACTCGAAGCAAGCGATCAGGAACAATTCAGTAGGAGGATTAGGATGTTCTCAGGATATGACGCGTGCTACTCATCATATGCTGAGAAGTACTTCAACAAGCCAGACGTGCAGAAAGCATTCCATGCAAATGCAAATGGGATGCTCCCTGGAAAATGGAAGGTTTGCAGGTGA
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| Protein seq | MATEAAATARWLLLPLLSPLQSPHKQQQLIFAALLLLFFFSSLQSLHCYAAAGYNEQQEADRVAFLPGQPSSPKVSQFSGYITVNRQNGRALFYWFFEAQALPSQKPLLLWLNGGPGCSSVGYGAASELGPLRVSRNGAGLEFNKFAWNKEANLLFLESPVGVGFSYTNTSSDLTKLNDGFVAEDAYNFLVNWLDRFPQYKDHEFYISGESYAGHYVPQLADLVYERNKDKKANRYIKLKGFIVGNPLTDDQYDSKGLVEYAWSHAVVSDGIYERVKKVCNFKISNWTNDCNEAMSSVFRQYQEIDIYNIYAPKCNLAQTSRVAAFDHALEASDQEQFSRRIRMFSGYDACYSSYAEKYFNKPDVQKAFHANANGMLPGKWKVCR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.997861 | 0.398103 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0332500 | RBH | 0.135711 | 0.388676 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g22954 | RBH | 0.083217 | 0.084878 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0332500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0015360 | RBH | 0.0 | 0.000000 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0015130 | RBH | 0.0 | 0.0 | 0.442504 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0015380 | RBH | 0.0 | 0.0 | 1.021106 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0014860 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0014910 | RBH | 0.000000 | 6.114828 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0213500 | RBH | 0.877061 | 1.910131 | 1.4903685 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0014810 | RBH | 0.0 | 0.0 | 0.183400 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0209800 | RBH | 1.4722055 | 0.3138425 | 18.1656725 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0014810 | RBH | 0.0 | 0.176850 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0014730 | SBH | 7.299607 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0014810 | RBH | 0.441918 | 6.378226 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0014920 | RBH | 0.0 | 0.000000 | 0.171287 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0014630 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G004160 | RBH | 0.509733 | 2.521054 | 1.623824 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0014830 | RBH | 0.000000 | 0.0 | 0.584013 |
