Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_Ung0007610 | OGI:99017990 | 1/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | ChrUN-Ctg87:69076-71981 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGAGGAGGAGTTGAAGGGGGAGGCCGTGGGGCCCCGCCGCCCCGGGCTAGGGTTATGGTTGGCGGCGCGGCGGCGGCTGGCCCCCGACGACCCCTTCTTCGCCGCCGGGGACATGGAGCGCGAGCTCCTCGCCAAGCAAGTGCGTTCTCTTCCCCTTTCACCTCCCTTCCTTCTGCTCGCTTAATTTGGGCGCTTTAGCTTCTTCGATTTTACGGGGATTTTTTTTGTTAGCTGTATTGAGCTGGAACCCGTGGAAAAGATGAAATAGAGATAGTAAAATCAGCCATGATAACCTTTGATTTTGCAGAAATTCAGCTGTACTGTACATAAGAGGAAAAGCTTTTGCCCTTCTTTGAAAAAAAAAAGAGAGAAGAAATTCAGCTGCACTTAGCATCAGTTAGGTGGGAATTCCTTAATGCTCTGCAATACTTGTTTCTTTAATTTCTTGAACGGATCATGGCCGATTAGCTCAGATACCCTGCCCTGATGTGAAAAGTGTAGATGAACTGTGCTTTTACTCAACAAGTCCCCTATACTCCACTGTTTTTTTAGGTGTCTGATGTTTTCTTGTTTAGGTTGCTCTGGATCTCTCCGAAGATGAACGGTACCAGCTTGAGAGGATGGAAGTGGCGAGTGCCAAGTAAGAGATTGATCTTTACTTATGCTTACTCTTTGGATTGATGATTATTTATCCTTTCCGTTTCATGCCGAATTAGGGGGGGGGGGGGGGTTAGTCCCTGTCACATCAGATGTTTAGACACTAATTTGAAGTATTAAACGTAGACTATTGACAAAACCCACTCCATAACCTTGGACTAATTCGCGAGACGAATCTATTGAGCCAAATTAATCTATGATTAGCCTATGTGATGCTACAGTCAACATGTGCTAATTATGGATTAATTAGGCTTAAAAAATTTTTCACGCGAATTAGCTCTCATTTATGTAATTAGTTTTGTAAGTAGTCTATGTTTAATACTCTAAGGGCCCCTTTGAATCGTAGAAATGAAAAAACGGAGGAATAGGAAAAACATAAGATTCGACAGGAATATAAGTGTAAAACAGAGGATTGCAAAACACAGGGAAAACACATGAATGATCGTTTAATTGGACCAGAGGAAAAACACAAGAATCGGATGAGAGAGATAGACTCAAAGGATTTTTTCCAAGAGGTTGGATCTCTTGCTAAGTTTCCTCCAAAACCTATATGCTATAAGCCATTCCATAGGAATTTTGTAGGATTTGGAAAACTTCAATCCTTTCAATCAAAGAGCTATATAGGAAAATTTCCTACAGGATTTCAATCCTATGAAATTCCTTCATAATTTCATTTGATTCAAAGGGGCCCTTAATTAGTGTCCAAACATCCGATGTGCCAGGGACTACAGTTTAGTCCCTAGATCCAAACACCCCCTAACATACCCTCTCTACAGATTTAAAACAGCATGTTAATGTACTGTTTTTCTGCATCCCCATAACACCATAAATTTCTTCGCTGTAGCTAAGGAAGTCCCTGAACCAGTGGTCCACACCCCACAGTGACTAAAGTCTGAGAAAATGACAACTGGATGTCTTGAACTAAATTATTGTACGAGTTCTCTAGAACCTATAATTCAAAATGATTGGCGAGTATTCCATCCTGACACCTGCTAAATCATGTCACCTTTTGCAGTTGTATGTTCTCTGTGTTGTGTTAGTACTGCAAGTTTTGGTCTCATTCTGTTTATTTGATCATATATACTACTGCAAGTTTATGTCACCTTTTGCAGTTGTATGTTCTTTGTGTTGTGTTAGTACTGCAAGTTTTGGTCTCATTCTGTTTATTTGATCATATATACTACTGCAAGTTTTGGTCTTATCTGTTCGATTTATTTGATCATATGTCTTAAGCTCTTGCAGTGCCCTTTTATGCCCAATTTCTGGCTGTGGTGCTCTAGATTGCCTGGAGAACTTTGAGGACCACTATCGCACCCGTCATACTGCTTCATGCTCTGTATGTTGGAGAGTGTATCCAACTTCAAGGCTGCTGAGTATTCATATTTCTGAGGCACATGATTCCTTTTTTCAAGCAAAAGTTGCCCGTGGTTTTCCAATGGTAATAAATTCATAATCTATCCATGCCCCCAGTTCTTTAATTGGTTTAATTTTGTGGCATCATGCACACTAGCCAATTTTATGCAAACCCAGAACTTCCAGTGGACTGTGCCTGCTGGCCAGTTTAAAATTACTACTCAATGTCTTAGCATTAGTTAGCATTACATGGTTTTCTGGTCCTGCTAATGAAGCTTTCCAATTTCCACATGTCACCTTTACTGGCATCTGATTCTTGTATAAATTTACATAGTAGTAAGTGATACTTTTATATTCCCTCAACTTTCTATAGCAATTCACATTGTGTATGCTATTTTTGAAACAGTATGAGTGTTTGGTGGAGGGTTGTGGGGTGAAGTTGAAGAGCTACAAAAGTCGGCAGCAGCATCTTCTTGATAAGCACCAGTTTCCCAAGTCATTTGAATTCTTCAAAAAGCACGCCCTTCGCAACGCCAGCGGAACAAGAACCAGAAGCAACGGCAAACAGTTCACAAGGGAGACGAGACAAGCGAAACACTAATGGATGTTGATGGGAAGAAGAGCTCAAGGTACATGAATTCCAGATATCGGCCAAAGCAACATGATGGAAAAGAGTCAAAAGAAAATGAGCATAGTAGCTGTAAGGAGGCCAAGAACAACGAAATGGAGGTTGACAAGCAGGTTGATGAGCTTGCTTCGGCCGTATCAAGACTGAGCACAGCGGATTCAACTCCTTCTAGCATAAGCTTTGGTCATCGTCGCTCTCGCGGTCTTGCTTTTGTCCCTAGGTCGATTCGGCAGAACAAGCAGGTTTCTCAGACAGAACCAAAATGA
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| CDS seq | ATGGAGGAGGAGTTGAAGGGGGAGGCCGTGGGGCCCCGCCGCCCCGGGCTAGGGTTATGGTTGGCGGCGCGGCGGCGGCTGGCCCCCGACGACCCCTTCTTCGCCGCCGGGGACATGGAGCGCGAGCTCCTCGCCAAGCAAGTTGCTCTGGATCTCTCCGAAGATGAACGGTACCAGCTTGAGAGGATGGAAGTGGCGAGTGCCAATGCCCTTTTATGCCCAATTTCTGGCTGTGGTGCTCTAGATTGCCTGGAGAACTTTGAGGACCACTATCGCACCCGTCATACTGCTTCATGCTCTCGGAACAAGAACCAGAAGCAACGGCAAACAGTTCACAAGGGAGACGAGACAAGCGAAACACTAATGGATGTTGATGGGAAGAAGAGCTCAAGGTACATGAATTCCAGATATCGGCCAAAGCAACATGATGGAAAAGAGTCAAAAGAAAATGAGCATAGTAGCTGTAAGGAGGCCAAGAACAACGAAATGGAGGTTGACAAGCAGGTTGATGAGCTTGCTTCGGCCGTATCAAGACTGAGCACAGCGGATTCAACTCCTTCTAGCATAAGCTTTGGTCATCGTCGCTCTCGCGGTCTTGCTTTTGTCCCTAGGTCGATTCGGCAGAACAAGCAGGTTTCTCAGACAGAACCAAAATGA
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| Protein seq | MEEELKGEAVGPRRPGLGLWLAARRRLAPDDPFFAAGDMERELLAKQVALDLSEDERYQLERMEVASANALLCPISGCGALDCLENFEDHYRTRHTASCSRNKNQKQRQTVHKGDETSETLMDVDGKKSSRYMNSRYRPKQHDGKESKENEHSSCKEAKNNEMEVDKQVDELASAVSRLSTADSTPSSISFGHRRSRGLAFVPRSIRQNKQVSQTEPK |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_Ung0007610 | OsLima_Ung0007610.01 | ChrUN-Ctg87 | 69076 | 71981 | + | NAM | ||
| CDS seq | ATGGAGGAGGAGTTGAAGGGGGAGGCCGTGGGGCCCCGCCGCCCCGGGCTAGGGTTATGGTTGGCGGCGCGGCGGCGGCTGGCCCCCGACGACCCCTTCTTCGCCGCCGGGGACATGGAGCGCGAGCTCCTCGCCAAGCAAGTTGCTCTGGATCTCTCCGAAGATGAACGGTACCAGCTTGAGAGGATGGAAGTGGCGAGTGCCAATGCCCTTTTATGCCCAATTTCTGGCTGTGGTGCTCTAGATTGCCTGGAGAACTTTGAGGACCACTATCGCACCCGTCATACTGCTTCATGCTCTCGGAACAAGAACCAGAAGCAACGGCAAACAGTTCACAAGGGAGACGAGACAAGCGAAACACTAATGGATGTTGATGGGAAGAAGAGCTCAAGGTACATGAATTCCAGATATCGGCCAAAGCAACATGATGGAAAAGAGTCAAAAGAAAATGAGCATAGTAGCTGTAAGGAGGCCAAGAACAACGAAATGGAGGTTGACAAGCAGGTTGATGAGCTTGCTTCGGCCGTATCAAGACTGAGCACAGCGGATTCAACTCCTTCTAGCATAAGCTTTGGTCATCGTCGCTCTCGCGGTCTTGCTTTTGTCCCTAGGTCGATTCGGCAGAACAAGCAGGTTTCTCAGACAGAACCAAAATGA
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| Protein seq | MEEELKGEAVGPRRPGLGLWLAARRRLAPDDPFFAAGDMERELLAKQVALDLSEDERYQLERMEVASANALLCPISGCGALDCLENFEDHYRTRHTASCSRNKNQKQRQTVHKGDETSETLMDVDGKKSSRYMNSRYRPKQHDGKESKENEHSSCKEAKNNEMEVDKQVDELASAVSRLSTADSTPSSISFGHRRSRGLAFVPRSIRQNKQVSQTEPK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0498400 | SBH | 0.843772 | 0.407616 | 3.180127 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g30484 | SBH | 0.568910 | 0.273342 | 0.816197 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0498400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0014750 | SBH | 1.094117 | 9.857750 | 3.852938 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0014680 | SBH | 0.000000 | 2.000754 | 1.504969 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0014630 | SBH | 1.413284 | 3.485653 | 8.117364 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0014410 | SBH | 0.123069 | 0.273931 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0014720 | SBH | 6.046510 | 5.071501 | 10.260664 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0278500 | SBH | 5.6085965 | 7.595511 | 8.873298 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0014980 | SBH | 0.361994 | 0.520750 | 1.601746 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0291400 | SBH | 5.196984 | 7.1756525 | 9.378623 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0014950 | RBH | 0.244608 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0014890 | SBH | 0.677786 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0014550 | SBH | 4.382751 | 5.873714 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0014360 | SBH | 0.550225 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0014670 | SBH | 0.314128 | 3.086108 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G014470 | SBH | 0.369773 | 5.584622 | 0.836894 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0014740 | SBH | 1.376973 | 0.000000 | 5.248590 |
