Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_Ung0007150 | OGI:99017220 | 1/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | ChrUN-Ctg79:91120-92446 | ||||||||
| Gene Symbol | CLR1, OsCLR1, DSNP1 | ||||||||||
| DNA seq | ctggggaaacattgaaacaattttctgtattattggagcagcacaacgtatttacagcagttctaaattctagcaattgttcttaccgttcaattaccaatcatgacagctacgcactaaaaagttttgagatcaaagaggtatgacactctcgaagcatcccaatgagcagttagagagtgaagtttctcaattccacagaattgcaaccaacacatatcaccaagcaatcctagctcaaatttgcataggagtacccaattgcgccacggagtcaccagaagaacgccgcttcacccgccgcttctcgtactcggggtcatcggtgggcagctcgtaacggcacaccggacacgagttccggatggcgagccacggctcgatgcacgccccgtggtacaagtgcgcgcacggcagctgcgtggcgagctccccctgcgcgatcccgtccttgcacacggcgcaaccccgcgacgccgccgccgcctcctccccgccgccgccgaccgccaccacctggagccgctccaccgccgcgcgcgccgcggggggcgcccctcccgccgcggcgtccgcgacgtgccccggcagcacctcgaagtcgtcctcgtccagcggcaccgggagcacctcccaccccacgctccggaagatgtcccctatgtcgtccccctcgtcgccgaagtcgaacggctcgtcggagaaccccgattcgtcgtcgccgctgttgagcccctccatcgcgccgaggatctccctctcgtcgaggaacccgaacacgtcgccgtccccaacaaggcccccatctcctcctccaccaccaccaccaccaccagcagcgacggctccgggggcagggacagcggcgtcggcgatctcctcccactcgaatccgcccccgaccatctcctcgtcggcgaggtcgtcctcgaggcagtcccagaagggaggggagcgggaggagaggcggagctcgaggtcgatgtcggggtcggggtcggggtcggaggcgaaggagaacggggagcccggggcgggcgcgggggcggctagggtttcgtcgtggtcgaaccccgccgcgtcgtcgtcgaggaggcggtggtggtggtgggggtggcgctcctcgtcctcctcctcgaccacctcggagaaggaggcgaagtaggaggaggaggaggaggagaagccggcggggtggtggtcggcggcggcgtcgaggaagaggtcgtcggcggcgatctcctcctccatgggtcgcgaccgcgtgggagggaggcgtggcgtccccgtctcgagtttggttaggttgggcccggcggggtcagtc
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| CDS seq | atggaggaggagatcgccgccgacgacctcttcctcgacgccgccgccgaccaccaccccgccggcttctcctcctcctcctcctcctacttcgcctccttctccgaggtggtcgaggaggaggacgaggagcgccacccccaccaccaccaccgcctcctcgacgacgacgcggcggggttcgaccacgacgaaaccctagccgcccccgcgcccgccccgggctccccgttctccttcgcctccgaccccgaccccgaccccgacatcgacctcgagctccgcctctcctcccgctcccctcccttctgggactgcctcgaggacgacctcgccgacgaggagatggtcgggggcggattcgagtgggaggagatcgccgacgccgctgtccctgcccccggagccgtcgctgctggtggtggtggtggtggtggaggaggagatgggggccttgttggggacggcgacgtgttcgggttcctcgacgagagggagatcctcggcgcgatggaggggctcaacagcggcgacgacgaatcggggttctccgacgagccgttcgacttcggcgacgagggggacgacataggggacatcttccggagcgtggggtgggaggtgctcccggtgccgctggacgaggacgacttcgaggtgctgccggggcacgtcgcggacgccgcggcgggaggggcgccccccgcggcgcgcgcggcggtggagcggctccaggtggtggcggtcggcggcggcggggaggaggcggcggcggcgtcgcggggttgcgccgtgtgcaaggacgggatcgcgcagggggagctcgccacgcagctgccgtgcgcgcacttgtaccacggggcgtgcatcgagccgtggctcgccatccggaactcgtgtccggtgtgccgttacgagctgcccaccgatgaccccgagtacgagaagcggcgggtgaagcggcgttcttctggtgactccgtggcgcaattgggtactcctatgcaaatttga
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| Protein seq | MEEEIAADDLFLDAAADHHPAGFSSSSSSYFASFSEVVEEEDEERHPHHHHRLLDDDAAGFDHDETLAAPAPAPGSPFSFASDPDPDPDIDLELRLSSRSPPFWDCLEDDLADEEMVGGGFEWEEIADAAVPAPGAVAAGGGGGGGGGDGGLVGDGDVFGFLDEREILGAMEGLNSGDDESGFSDEPFDFGDEGDDIGDIFRSVGWEVLPVPLDEDDFEVLPGHVADAAAGGAPPAARAAVERLQVVAVGGGGEEAAAASRGCAVCKDGIAQGELATQLPCAHLYHGACIEPWLAIRNSCPVCRYELPTDDPEYEKRRVKRRSSGDSVAQLGTPMQI |
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| Function | E3 ubiquitin-protein ligase CIP8 [UniProtKB/Swiss-Prot:Q9SPL2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_Ung0007150 | OsLima_Ung0007150.01 | ChrUN-Ctg79 | 91120 | 92446 | - | NAM | ||
| CDS seq | atggaggaggagatcgccgccgacgacctcttcctcgacgccgccgccgaccaccaccccgccggcttctcctcctcctcctcctcctacttcgcctccttctccgaggtggtcgaggaggaggacgaggagcgccacccccaccaccaccaccgcctcctcgacgacgacgcggcggggttcgaccacgacgaaaccctagccgcccccgcgcccgccccgggctccccgttctccttcgcctccgaccccgaccccgaccccgacatcgacctcgagctccgcctctcctcccgctcccctcccttctgggactgcctcgaggacgacctcgccgacgaggagatggtcgggggcggattcgagtgggaggagatcgccgacgccgctgtccctgcccccggagccgtcgctgctggtggtggtggtggtggtggaggaggagatgggggccttgttggggacggcgacgtgttcgggttcctcgacgagagggagatcctcggcgcgatggaggggctcaacagcggcgacgacgaatcggggttctccgacgagccgttcgacttcggcgacgagggggacgacataggggacatcttccggagcgtggggtgggaggtgctcccggtgccgctggacgaggacgacttcgaggtgctgccggggcacgtcgcggacgccgcggcgggaggggcgccccccgcggcgcgcgcggcggtggagcggctccaggtggtggcggtcggcggcggcggggaggaggcggcggcggcgtcgcggggttgcgccgtgtgcaaggacgggatcgcgcagggggagctcgccacgcagctgccgtgcgcgcacttgtaccacggggcgtgcatcgagccgtggctcgccatccggaactcgtgtccggtgtgccgttacgagctgcccaccgatgaccccgagtacgagaagcggcgggtgaagcggcgttcttctggtgactccgtggcgcaattgggtactcctatgcaaatttga
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| Protein seq | MEEEIAADDLFLDAAADHHPAGFSSSSSSYFASFSEVVEEEDEERHPHHHHRLLDDDAAGFDHDETLAAPAPAPGSPFSFASDPDPDPDIDLELRLSSRSPPFWDCLEDDLADEEMVGGGFEWEEIADAAVPAPGAVAAGGGGGGGGGDGGLVGDGDVFGFLDEREILGAMEGLNSGDDESGFSDEPFDFGDEGDDIGDIFRSVGWEVLPVPLDEDDFEVLPGHVADAAAGGAPPAARAAVERLQVVAVGGGGEEAAAASRGCAVCKDGIAQGELATQLPCAHLYHGACIEPWLAIRNSCPVCRYELPTDDPEYEKRRVKRRSSGDSVAQLGTPMQI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.093645 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0633500 | SBH | 0.0 | 0.051902 | 1.949841 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g42700 | SBH | 0.0 | 0.359600 | 0.230259 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0633500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0023420 | SBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0023260 | SBH | 0.0 | 0.000000 | 0.121936 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0023380 | SBH | 0.000000 | 0.000000 | 0.550622 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0023010 | SBH | 0.048850 | 0.074153 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0023430 | SBH | 0.0 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0403200 | SBH | 3.0722075 | 9.064696 | 10.110588 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0022900 | SBH | 0.0 | 0.202432 | 0.204925 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0384500 | SBH | 4.0066335 | 11.240428 | 8.1663445 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0023350 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0023290 | SBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0022960 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0023630 | SBH | 0.647665 | 0.247201 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0023240 | SBH | 0.082970 | 0.974470 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G023000 | SBH | 0.035527 | 0.623721 | 0.248014 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0023220 | SBH | 0.371648 | 10.651835 | 2.454488 |
