Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_Ung0007090 | OGI:99017110 | 1/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | ChrUN-Ctg79:43698-46622 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAGCAATGCACAATAACAACATGCCAGACCGTTGTTTCAATGGCGTTGAAGGTGAGGCGATCACCTTCTTTTACCTCATTTTCCAGGCAAAATTTTCTCCAACCTGGTCCATTTATGTAGCCATAGGTGTTCGCTGTTTTGAAAGCCACTCGCCAAGATCCTTTTTTCTTCATGGATATCTTCAGTGTGATCGCACAGGCTTCTAGCAGACCAATTTGAGAGCAAAAGGTGCCTCTCACAGACTGCAATGTTAAAGCAATATAAAGAAATAAAATAGTAGTGAGATGTTTCATTATTTTTGAAAAAATAAACGTTCACAAAAATCAGAAGGATTGTTATTGTCAACACACTGTAGATTAAGAATATGTATGGCATTTCTGTATTGCCTTCCCTAACAAAAAAAATATATTGAGAAACACAAAAGAAATTTTCATTTTCATATCAGAATCAATAACAAGTACTACAAAATGGTCAAAATAAACAGCCAAGGACTTCTTGTCAGGAAATTCTCGACATTTAACTGATGGTATTTAACCAAAATTCTCATGATAAACTACATTTTTAGTTGATATCATGTTGTAGTGTCCTTTTTCTCTATGTGTATGACAATTTTACAATTACAGATTTGGTTCTTTAAAGCAAAAAAAATCATCCATATTTAGACCTAACAGATAGTTTCAGAAATTGAAGAAACAAAAGTCAGTGATTTTCCATGTTGATAATTTCTATATTTTTTTCCTTAAGCTCGTATTAAACCAAAAAAATCATCCATATTTAGACCTGAACAGATAGTTTTCAGAAATAGAAGAAACAAAATGTCAGTGATCTTTCATGTTGATTAATTTCATTTTTTTGTTCTTAAGCTCATAAGCAGTTAAGCTAGATAAAAACAGCAGAAGCTGAAGCGCTCACAAGTAGGCTATGAATACTATAGGCCGTCATTTCCTTTGTGAATGAATTCTGTGACACAATGCTGACATGTTTCTTATGTGGTTCAACCTTCACGGAAATTGGGGAAGCCCTAGATTTCCTGTTTGGTCCCTCTAAGCATGTACCCTCAATTCTTCGCGTCCTTTTCCGCTTGACAGGTGAAACTCCAACTTTTGCTGCACCTGCATAATTACATTTTGAAAAGAAACACGGAAAATCCATAGTTGAAACTACAACGGAGCTGGAATGCTACTGGCTTACTTTGTTGAGGCGCATTGCTCGGTCCTTCGGTACCATCAGTTAAGTACAGCGCTGCCGTTTTGTACTCCTTCAGGCAGCCGTTCTGTAGGAACACCTCAACCGTGAACACCATGTTACCTTCATACCGGAACAGCAGGATGTTGCCTTCGGAGAGATCATGAGCAGCCAGAAATGGCGCCCAGCCGTCTCGCAGTAGCACGTCCGGTTGCTCCCGTTGTAGTTCGACTCGCCAGAACTTGCCAAGAGGGCAAACAATAATGGCATTCTGGTGGTTGTTTGTGTAGGTTTCAGTCAGGTGTTGCTGCACAAACTTCTCAGGGATTTTCTGAAAGAATGTTGACAGCAAAAGAAAGAGCATGCTGTGAGCACATAATACATATAACTGCATCACCTTCAGAGCTAATAGCCTATCAATTCCACAAATACATAGTACTACTAGCACTAGCTTATTAGCTGAAGGCGGCCCTGTTCTTTTCATCTCATTCATCGAACTATTGAAACGGGGTTATTTGCTCCACTCTTCGAAAAATACGTTACCACTTGTTTTAAGTTATTTGTTTAAGTTTATTTCTTAAAGCATTTAACTTATCCCCATAATCCAATCGATCGATAATCCGCTTAACAATCTAAATCAAACAAGGCCAGAGTGCATTATCATAAGAAGAAGAGAAGCAGGTAATCAACCAGAAGAGCAGAACTTGGGCGGAAGTTGCAAGGGTTATGACTGGTGAAGCGGAGCTGTGGCGGCTAGCTAGAGCTGCAATCCCTGTTTTGGTAGCTCATGTTAGTGGAGAAGGGTCGCAAAATTTAGTTGGAGATTAGGCTTTTGTTTCTTGGTTCTCCTCCTGTACCCTGTCCCCTTCGCTTTGTCTTTTCGGCCCACTTTGTACATACATTTATTCCTTCTTAATACAAAGATACGCTCCTTGCGTATTCCAAAAAAAAAAAAAAAAGGTAAAGATGATGGCTTGGTGAATGCTCACCATCTTTTCCAGGTCTTCCTGTTGGAGCAGCTTGATGAAGCGAGGCCTGTCCTTGGTTCTCATACCTGTAAATGCAACCATAATCCGAATGTTTAAAAAAAAAAGCTACAAATCTTTACAAAGTAAAACCAAATTAGTCATATTTCAAGCAAAAATAATTTAACTCAACTTTGGCTCATGAATCATTATAGAAAAACATATAGAAATGGATAAACAGTTACACATACGCCATTGCTGAGATTTGGTGTACCTGCGTGAGGAGTGCAGAAGCGCGCGAGGCAGAAGCCCGGGTCGAACACCCTGAGCGAGGCCACCCCGCGCCGCTCCAGCCTCAGCACCACGCCCCACCCCTCGCCGAGCCCGTGCGCCGCCGCGAGCTCCGACCATCCGCCGCCCAGCCACGCCTCGCCGTCGCCGGCCGGCGAGCGGCGCAGCTCCACGCGCCAGACCTTGCCGAGCGGGCCCACCACGAGCACCGCCGCCGCCCGTCGGCCACTCTCCTCCTCCTCCTCCTCCCCGACCCCGGCGGCGTCGTCGTCGTCCAGCCTCGCCGCGAACTCGCCCGGGACGCTCTGCAAACCAACGATGATCACATCACGTTACTGGTGAGACCGAGACGCAGCTCGTCACGTCCGGGCTCCGGTCGATCGGACTCGGAGTAGTACGAACCAGCCGGTGGAGGCAGGCCGGCGAGAGCAGCGGCGCGGCGAACTTGGGCCGCCGCCGCAGTGAGCCGGCGGAGAGTGGCAT
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| CDS seq | ATGCCACTCTCCGCCGGCTCACTGCGGCGGCGGCCCAAGTTCGCCGCGCCGCTGCTCTCGCCGGCCTGCCTCCACCGGCTGAGCGTCCCGGGCGAGTTCGCGGCGAGGCTGGACGACGACGACGCCGCCGGGGTCGGGGAGGAGGAGGAGGAGGAGAGTGGCCGACGGGCGGCGGCGGTGCTCGTGGTGGGCCCGCTCGGCAAGGTCTGGCGCGTGGAGCTGCGCCGCTCGCCGGCCGGCGACGGCGAGGCGTGGCTGGGCGGCGGATGGTCGGAGCTCGCGGCGGCGCACGGGCTCGGCGAGGGGTGGGGCGTGGTGCTGAGGCTGGAGCGGCGCGGGGTGGCCTCGCTCAGGGTGTTCGACCCGGGCTTCTGCCTCGCGCGCTTCTGCACTCCTCACGCAGGTACACCAAATCTCAGCAATGGCAAAATCCCTGAGAAGTTTGTGCAGCAACACCTGACTGAAACCTACACAAACAACCACCAGAATGCCATTATTGTTTGCCCTCTTGGCAAGTTCTGGCGAGTCGAACTACAACGGGAGCAACCGGACGTGCTACTGCGAGACGGCTGGGCGCCATTTCTGGCTGCTCATGATCTCTCCGAAGGCAACATCCTGCTGTTCCGGTATGAAGGTAACATGGTGTTCACGGTTGAGGTGTTCCTACAGAACGGCTGCCTGAAGGAGTACAAAACGGCAGCGCTGTACTTAACTGATGGTACCGAAGGACCGAGCAATGCGCCTCAACAAAGTGCAGCAAAAGTTGGAGTTTCACCTGTCAAGCGGAAAAGGACGCGAAGAATTGAGGGTACATGCTTAGAGGGACCAAACAGGAAATCTAGGGCTTCCCCAATTTCCGTGAAGGTTGAACCACATAAGAAACATGTCAGCATTGTGTCACAGAATTCATTCACAAAGGAAATGACGGCCTATAGTATTCATAGCCTACTTTCTGTGAGAGGCACCTTTTGCTCTCAAATTGGTCTGCTAGAAGCCTGTGCGATCACACTGAAGATATCCATGAAGAAAAAAGGATCTTGGCGAGTGGCTTTCAAAACAGCGAACACCTATGGCTACATAAATGGACCAGGTTGGAGAAAATTTTGCCTGGAAAATGAGGTAAAAGAAGGTGATCGCCTCACCTTCAACGCCATTGAAACAACGGTCTGGCATGTTGTTATTGTGCATTGCTAG
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| Protein seq | MPLSAGSLRRRPKFAAPLLSPACLHRLSVPGEFAARLDDDDAAGVGEEEEEESGRRAAAVLVVGPLGKVWRVELRRSPAGDGEAWLGGGWSELAAAHGLGEGWGVVLRLERRGVASLRVFDPGFCLARFCTPHAGTPNLSNGKIPEKFVQQHLTETYTNNHQNAIIVCPLGKFWRVELQREQPDVLLRDGWAPFLAAHDLSEGNILLFRYEGNMVFTVEVFLQNGCLKEYKTAALYLTDGTEGPSNAPQQSAAKVGVSPVKRKRTRRIEGTCLEGPNRKSRASPISVKVEPHKKHVSIVSQNSFTKEMTAYSIHSLLSVRGTFCSQIGLLEACAITLKISMKKKGSWRVAFKTANTYGYINGPGWRKFCLENEVKEGDRLTFNAIETTVWHVVIVHC |
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| Function | Putative B3 domain-containing protein Os06g0632500 [UniProtKB/Swiss-Prot:Q67VL7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_Ung0007090 | OsLima_Ung0007090.01 | ChrUN-Ctg79 | 43698 | 46622 | - | NAM | ||
| CDS seq | ATGCCACTCTCCGCCGGCTCACTGCGGCGGCGGCCCAAGTTCGCCGCGCCGCTGCTCTCGCCGGCCTGCCTCCACCGGCTGAGCGTCCCGGGCGAGTTCGCGGCGAGGCTGGACGACGACGACGCCGCCGGGGTCGGGGAGGAGGAGGAGGAGGAGAGTGGCCGACGGGCGGCGGCGGTGCTCGTGGTGGGCCCGCTCGGCAAGGTCTGGCGCGTGGAGCTGCGCCGCTCGCCGGCCGGCGACGGCGAGGCGTGGCTGGGCGGCGGATGGTCGGAGCTCGCGGCGGCGCACGGGCTCGGCGAGGGGTGGGGCGTGGTGCTGAGGCTGGAGCGGCGCGGGGTGGCCTCGCTCAGGGTGTTCGACCCGGGCTTCTGCCTCGCGCGCTTCTGCACTCCTCACGCAGGTACACCAAATCTCAGCAATGGCAAAATCCCTGAGAAGTTTGTGCAGCAACACCTGACTGAAACCTACACAAACAACCACCAGAATGCCATTATTGTTTGCCCTCTTGGCAAGTTCTGGCGAGTCGAACTACAACGGGAGCAACCGGACGTGCTACTGCGAGACGGCTGGGCGCCATTTCTGGCTGCTCATGATCTCTCCGAAGGCAACATCCTGCTGTTCCGGTATGAAGGTAACATGGTGTTCACGGTTGAGGTGTTCCTACAGAACGGCTGCCTGAAGGAGTACAAAACGGCAGCGCTGTACTTAACTGATGGTACCGAAGGACCGAGCAATGCGCCTCAACAAAGTGCAGCAAAAGTTGGAGTTTCACCTGTCAAGCGGAAAAGGACGCGAAGAATTGAGGGTACATGCTTAGAGGGACCAAACAGGAAATCTAGGGCTTCCCCAATTTCCGTGAAGGTTGAACCACATAAGAAACATGTCAGCATTGTGTCACAGAATTCATTCACAAAGGAAATGACGGCCTATAGTATTCATAGCCTACTTTCTGTGAGAGGCACCTTTTGCTCTCAAATTGGTCTGCTAGAAGCCTGTGCGATCACACTGAAGATATCCATGAAGAAAAAAGGATCTTGGCGAGTGGCTTTCAAAACAGCGAACACCTATGGCTACATAAATGGACCAGGTTGGAGAAAATTTTGCCTGGAAAATGAGGTAAAAGAAGGTGATCGCCTCACCTTCAACGCCATTGAAACAACGGTCTGGCATGTTGTTATTGTGCATTGCTAG
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| Protein seq | MPLSAGSLRRRPKFAAPLLSPACLHRLSVPGEFAARLDDDDAAGVGEEEEEESGRRAAAVLVVGPLGKVWRVELRRSPAGDGEAWLGGGWSELAAAHGLGEGWGVVLRLERRGVASLRVFDPGFCLARFCTPHAGTPNLSNGKIPEKFVQQHLTETYTNNHQNAIIVCPLGKFWRVELQREQPDVLLRDGWAPFLAAHDLSEGNILLFRYEGNMVFTVEVFLQNGCLKEYKTAALYLTDGTEGPSNAPQQSAAKVGVSPVKRKRTRRIEGTCLEGPNRKSRASPISVKVEPHKKHVSIVSQNSFTKEMTAYSIHSLLSVRGTFCSQIGLLEACAITLKISMKKKGSWRVAFKTANTYGYINGPGWRKFCLENEVKEGDRLTFNAIETTVWHVVIVHC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0632500 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g42630 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0632500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0023380 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0023220 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0023340 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0022970 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0023390 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0402600 | SBH | 0.1018975 | 0.085095 | 1.7739675 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0022860 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0383600 | SBH | 0.247876 | 0.080199 | 6.911881 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0023310 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0023250 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0022920 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0023600 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0023200 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G022960 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0023180 | SBH | 0.0 | 0.0 | 0.000000 |
