Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_Ung0006930 | OGI:99016870 | 1/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | ChrUN-Ctg77:112795-116902 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gtatcaaagcattctaatttgagtcttccatgaacttaacatctaggagacagagtatgcaaatagtgttcaatattattcagttaatgatctctgacaatttaatcccaattgaacttatcctttaggtgacaagagtatgcaaattgtgttagatgttcttgactgctcagtctatgatactctatctgacaagaacatttcacatgctacaggacagggctatccaagtactaccaagggaagtcccaatccttcacatcgctctgcaacgccaggtgcgtccaagaccttgcaaagaagacaaccccttacatcaccaggatgaagctgcagctgcgcagaggccatggagtcgtggatcggttgtcgaattcacgtcgcgctccagggccctgcagcaagacgatggcgaagaaggcgacgaggtgctcgtccgatcgattgctgtcaagagcaagggagcacaagcctcttcacagcagcagcagcacacctgcacaacagagcaagaaagagctgtcaagatgctagttgaaaggcagtacaggggtactgaaaaaaaaatggagatgaggtttttcaacaaaatgaactcttcagcaatcagcactcagctgcactggagctagaaatatagaatgtctccaggtctcctccaaacgatgctttcagaaggaagttttgctcagttttcttttcttctgtggatcattgtgtcattttacttgataaaatggctgagccgatgttagatacatcatgatcaagccaacataatctggagacatttcatcaagtttgtacatagatgcaatattcataagatatattattttgactaatacataattattttgactttgggcaaaggatacattacaaagccatcattgggcatggtcccaaaccccactaggggttcaacatgtctagagataaatcctcggcaattatgtccaaagaatgattcttgaattcattacgaacttaaaagaaagagtaaaggaggttccaagcgacatgacagattttctccacttttcactaataaattcaactgatgaaatacattggtttggaagtttgaaggatctcgtagccattggcaatcccaataaatcactccactgatccccagaatttccaagtatcttgaatccctcagcttccagtgctgctcgtctttctgacttgtactgcacggctgtcttgccaatatcaggggattgcctgtaccagaaacatcatttcgattaatgaaaaatgaggttggtgccttcaattatactagatgcacaagtaacttctgcagtttcatgttttgctgccagaaaaaaaaactataggatgcagatcagccagtatatcaccgaattaaaatgtcagtaacattgacatgggaaacataacatttggaagggaaagcaggcactttgccacttccaaatggtgtatagtaaatcaaatggtgtattggggaaacataacatttggaagagagagcgggcacttcgccacttccattcataattagtgtagatgcctcggaaacatggtgtattgtaaatcaaatggtactttgagaaatattgccaacagtttagttaagcgtaatagtgttgttaaggcagtttaaggcaaccactgccttagcgccatagtgctgaggcgtaaggcgttgcgacgccatatgagatggttgaggtgtgattagttggagaatatggtagagaaattaggaagaaaaaaataggtatttggtaaaaggcccacagagccaggcagccagcccaccaaagcccaacataggtcttcatacccatgctttctatgctctaagaggcatcgtactccaccaggcaccagccgctgcgacgaggaagaaagtgactgcaagccaactagggttctaggatgaacttaccccctttcttctttccatttttctactggttttgcctataaggccttcttctttccatttttccactcgttttgcctctagctctcttaggcggatgcaacataaggcggagtggacaccttgacctatgctaccaccttatcactatggtgatgatatagcaacgccttgataaccactaataatcccctctggcaagatgaccaatggacatgatgatgtttgatgttatacaatagttatgtgtctaaactctaaactaagagaggaaaattttcttgaaaaagattaacatattcatcacaacagaatctgaactctgtagttccatgaaaatcatgcaccagtccttacattgaagagcagttctactggtaactaccgaagggtaggtcatactgagttgttgacaaattacagggcaccagttcataaaaatgtatagtaaaagatccaatttatcatttagaagcaagggccatctataaactgttttgatccaaacaggagacatcctatgcaaaataattaatactaatccgtttgcgtcaaaaattaatactaatccgtagccaactcattgattcaagggttctatgaaatacctcaggatgagtttttcccatgaatggtagcctgcaaataaaagattcacttgtgtggcgttacgttggaattcacttcgaccggtcaagaggatgatgtggatcccaagaccctgaagctcattgtacagtttcaagctggctggtaatgcaggtgcctttgctacatccacccattcatcaaatgaggtctcgttgaactctagtgatctacaaatcagagggagcatgaacaaaaatgaggcagtgatatttttcagtagaaatataaacatgattaacacttcagaaagagagagattatacaatcccttcaaaacaacaagataccagtttgttttctttaactccatgatttgaataaaattgattactatttcattagaaagcaatgagagctgctacacatacaatgtttgcttacgatatccttacgaccaaacatttctgttaacagctgcatgttccagtcctaagaagacgttttctctcctaggtggatggcacacggcgttagatcgtagaaagattgtaaccaaaaacattgtacgcatagtattttccgaaaggaataccatgtcgcacgatattctagaggaaagatcgtaagcctaccgcttaaatccattaaatatagtataatcttttgataattataaatgactagaatcacatatcttgttgctatgtgggatactaaaaccaaatccaccacagaatggcagttgtgttggtacttgggcacattatctaaccaaatagtgccacatgctagaataccagtatcaagaatagttttcaccgattaatacaaatagttttcacatgatctcagtttacacgagtagcaaagcacacagaattttcttactaccctttcaatcagtggtaaaatttccccagtaaatacgaaaattgcaactcgttgtttcgcaaatcgcttcaattttgtgcatgaacagtaaaggaaagggagagagatgcagggtgagtgtacccacccccagccgttgacggcgtagtagggcgcgttggtgagcagcgtctcgtcgacgtcgaacacccacgccggcctggcccccccgccgcccgacgccagcgcccgcgcggcgaaggcgagggagtccgcggcggcgacggcagagtcggaggcgtagcgctccccttccatgtaggcgcgcacgaactccaggcaccgcggggggatggcggtccacggccccgcgttccccgtctccaccgacagcctccatccgtcgcagtacagctcgtcggaagattctccacccccgccgccgccgccggaggacactcccgtggggacgcccgtcaccgtgcggagaacgggctcggcatccgccgccgccgccgcgaggagcgcgaggacgaggaggaggaggaggcagcgcatcgtgggtgtcgagagggtgccggctcgccgccggcgaggtctcaggaaccggccggcgaattagggggggggggggggaggaggaggtggcggtggtgggcccgcgggggatattccgatggggttcgcggcgggggggctctcgtataaaaatgtaaaaagagt
More
|
||||||||||
| CDS seq | atgcgctgcctcctcctcctcctcgtcctcgcgctcctcgcggcggcggcggcggatgccgagcccgttctccgcacggtgacgggcgtccccacgggagtgtcctccggcggcggcggcgggggtggagaatcttccgacgagctgtactgcgacggatggaggctgtcggtggagacggggaacgcggggccgtggaccgccatccccccgcggtgcctggagttcgtgcgcgcctacatggaaggggagcgctacgcctccgactctgccgtcgccgccgcggactccctcgccttcgccgcgcgggcgctggcgtcgggcggcgggggggccaggccggcgtgggtgttcgacgtcgacgagacgctgctcaccaacgcgccctactacgccgtcaacggctggggatcactagagttcaacgagacctcatttgatgaatgggtggatgtagcaaaggcacctgcattaccagccagcttgaaactgtacaatgagcttcagggtcttgggatccacatcatcctcttgaccggtcgaagtgaattccaacgtaacgccacacaagtgaatcttttatttgcaggctaccattcatgggaaaaactcatcctgaggcaatcccctgatattggcaagacagccgtgcagtacaagtcagaaagacgagcagcactggaagctgagggattcaagatacttggaaattctggggatcagtggagtgatttattgggattgccaatggctacgagatccttcaaacttccaaaccaatgtatttcatcagttgaatttattagtgaaaagtggagaaaatctgtcatgtcgcttggaacctcctttactctttcttttaagttcgtaatgaattcaagaatcattctttggacataa
More
|
||||||||||
| Protein seq | MRCLLLLLVLALLAAAAADAEPVLRTVTGVPTGVSSGGGGGGGESSDELYCDGWRLSVETGNAGPWTAIPPRCLEFVRAYMEGERYASDSAVAAADSLAFAARALASGGGGARPAWVFDVDETLLTNAPYYAVNGWGSLEFNETSFDEWVDVAKAPALPASLKLYNELQGLGIHIILLTGRSEFQRNATQVNLLFAGYHSWEKLILRQSPDIGKTAVQYKSERRAALEAEGFKILGNSGDQWSDLLGLPMATRSFKLPNQCISSVEFISEKWRKSVMSLGTSFTLSFKFVMNSRIILWT |
||||||||||
| Function | Acid phosphatase 1 [UniProtKB/Swiss-Prot:P27061] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_Ung0006930 | OsLima_Ung0006930.01 | ChrUN-Ctg77 | 112795 | 116902 | - | NAM | ||
| CDS seq | atgcgctgcctcctcctcctcctcgtcctcgcgctcctcgcggcggcggcggcggatgccgagcccgttctccgcacggtgacgggcgtccccacgggagtgtcctccggcggcggcggcgggggtggagaatcttccgacgagctgtactgcgacggatggaggctgtcggtggagacggggaacgcggggccgtggaccgccatccccccgcggtgcctggagttcgtgcgcgcctacatggaaggggagcgctacgcctccgactctgccgtcgccgccgcggactccctcgccttcgccgcgcgggcgctggcgtcgggcggcgggggggccaggccggcgtgggtgttcgacgtcgacgagacgctgctcaccaacgcgccctactacgccgtcaacggctggggatcactagagttcaacgagacctcatttgatgaatgggtggatgtagcaaaggcacctgcattaccagccagcttgaaactgtacaatgagcttcagggtcttgggatccacatcatcctcttgaccggtcgaagtgaattccaacgtaacgccacacaagtgaatcttttatttgcaggctaccattcatgggaaaaactcatcctgaggcaatcccctgatattggcaagacagccgtgcagtacaagtcagaaagacgagcagcactggaagctgagggattcaagatacttggaaattctggggatcagtggagtgatttattgggattgccaatggctacgagatccttcaaacttccaaaccaatgtatttcatcagttgaatttattagtgaaaagtggagaaaatctgtcatgtcgcttggaacctcctttactctttcttttaagttcgtaatgaattcaagaatcattctttggacataa
More
|
|||||||
| Protein seq | MRCLLLLLVLALLAAAAADAEPVLRTVTGVPTGVSSGGGGGGGESSDELYCDGWRLSVETGNAGPWTAIPPRCLEFVRAYMEGERYASDSAVAAADSLAFAARALASGGGGARPAWVFDVDETLLTNAPYYAVNGWGSLEFNETSFDEWVDVAKAPALPASLKLYNELQGLGIHIILLTGRSEFQRNATQVNLLFAGYHSWEKLILRQSPDIGKTAVQYKSERRAALEAEGFKILGNSGDQWSDLLGLPMATRSFKLPNQCISSVEFISEKWRKSVMSLGTSFTLSFKFVMNSRIILWT
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0559500 | SBH | 3.243036 | 4.546215 | 11.575547 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g36400 | SBH | 2.069221 | 2.741931 | 2.783386 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0559500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0019550 | SBH | 1.581654 | 9.874469 | 3.612542 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0019420 | SBH | 0.254554 | 4.789713 | 1.833691 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0019480 | SBH | 4.022007 | 10.720411 | 6.235950 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0019280 | SBH | 0.587515 | 0.087421 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0019680 | SBH | 4.830738 | 9.377317 | 4.393624 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0338100 | SBH | 10.443449 | 17.52616 | 4.111512 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0019160 | SBH | 0.419339 | 0.396498 | 1.128122 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0312100 | SBH | 10.511426 | 15.7234265 | 15.5641445 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0019600 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0019580 | SBH | 0.879379 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0019240 | SBH | 9.313429 | 6.248638 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0019930 | SBH | 1.816733 | 0.677023 | 0.932770 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0019380 | SBH | 1.163171 | 3.085314 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G019280 | SBH | 0.891057 | 1.760372 | 1.053468 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0019450 | SBH | 1.811017 | 23.382557 | 4.992450 |
