Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_Ung0006880 | OGI:99016800 | 1/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | ChrUN-Ctg77:18356-21262 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgggcaaggtggctgccatggacaatccccaccttgttcatactatcctcctagcacaatctctgcttctcttcacctgcttgttcctccattccaattgtgaaacaatcactagggatgatgagaaggccatcctcctaagccttgaaagaagctggggaggttcggtgaccgtgaattggagctctgtcatatacgaagatcaatgtaattggccaggtatcaattgcacagatggctttgttacaggaatctcacttactggccatggactcaacagcttaccagcggctatctgttcattgacgaaactttcacacatcgatctctctcgcaacagcatttcaggttctttccctacagctctttacaattgttcaaaccttcggtatctagacctctcatataacactttagttaattctctcccatccaacatcgatcggctatcaccaaggcttgtgtatctcaaccttgcatcgaatagtttatcagggaacatccctagttcaatcggccagcttaaagtgcttactaatctataccttgatgcaaaccaatttaacggctcctacccagcagaaattgggaatatttcagcacttcgagttctgcgcctaggcgacaatccatttctttctgggacaatctatccacagtttggaaatctaacaaacctggaatacttatccatgagtaaaatgaatatcattggcaaaattccagctgctatgtcaaaggctaacaatgtaatgttctttgatttatctggcaaccacctcagtgggtcgattcctagttggatttggagtctaaagaggctggtgaccctccaactatatgcaaaccacctgtctggccagattaatgcgccaattgaatcaacaaatttggttgagattgatgtttcatcgaataacctctcaggacagatcccagaggatatcggtcagcttgaggaactagaaagactgtttttgtccaacaatcatttcactggttcaatccccgatagcgttgccttgctcccaaaacttactaatgtgcagcttttccaaaactccttcgaaggcatcctgccacaagaactggggaagcattctttactctttaatttggaaacccattataacaatttctctggaacgttacccaagggtctttgctctaagggggcccttgcttatatctctatgtcagccaacatgttttccggtgagcttccagcatctctcttaagatgtaacagtttgaattatgtctggctttccaataataatttctcaggaacgtttccagctggcttaaccgaggtacagatccaagaggttaacttatctggcagattgcctagcaactgggcatcaaatctggtagaaattgaccttagcaataacaaattctcaggtagactcccaaacacaattaggtggctaaagtcacttggagtcctagatctttcagaaaacagattctctggccctattataccagaaattgaatttatgaacctaacttttctaaatctctctgataaccaattttctggccagattccccttctcttgcagaatgaaaaatttaaacagagtttcctgtccaatcttgggctgtgctcgtccaaccactttgcagactatccagtatgcaatgaacgacacttgaagaacagacttttgatcattttccttgcccttggtcttactagtgttttactgatatggttgtttggattactaaggataaaagtgttacccagaagacaaaacgaaaatactacaacaccgcggtggaaattgacagcatttcataacatcaattttaattaccaagacattatctgtggtctggctgataacaatctaatcgggagtggtggttcaggaaaggtatacaagatatgccttcataacaacagttacaggtttgtggctgccaagaagatagttagtgatcggagccggtccaatatgctggaaaagcattttcaagctgaggttgagattcttgggtccatccggcatgccagtgttgtcaggttgcttagttctatgtcatccactgaatcaaaagtgctgatctatgagtatatggaaaatggtagcttataccaatggttgcatcagaaagatatgcgtaataacaatgaaccattaagttggccaagaaggatgtcaattgccatagacgcagcaagaggactctgctacatgcaccatgattgttctccaccaatagctcactgtgatgtcaagccaagcaacatcctattggactatgagttcaaggcaaagattgcagatttaggtttagcccgtgcgctggctaaagccggagagccagagtccatctcaacaatggtcggatcatttggatacatggcaccaggtaaaattttctgattttcctttattgtaaactccctaggatggccttactcaattgattctcctttttttttttcaagagtttggaagctcgagaaaaatcaatgagaaagttgatgtctacagttttggggtggttctcttggagctgacaacagggaggtttgcgaatggtgggggtgggtatgagaatttggcacaatgggcatggaggcgatttcaagatgaggacttccaattaattgatgtaattgatggagacatacaagatccagcctacttgcaggaggtgcaattagtgttcaagctaggactaatttgcacaggagcaaagccattatcaagaccttcaatgaaggaggtgttgcaggtcctacaacgctgaataaaaaccatgcatgcagctcacatattatctgaatttagaatgttgtcaaatgctagagatcaacacaaagatgaagaaaaggcatgtttgatacaagtcttgaaatgcttaacatgttcgatgttttatcc
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| CDS seq | atgggcaaggtggctgccatggacaatccccaccttgttcatactatcctcctagcacaatctctgcttctcttcacctgcttgttcctccattccaattgtgaaacaatcactagggatgatgagaaggccatcctcctaagccttgaaagaagctggggaggttcggtgaccgtgaattggagctctgtcatatacgaagatcaatgtaattggccaggtatcaattgcacagatggctttgttacaggaatctcacttactggccatggactcaacagcttaccagcggctatctgttcattgacgaaactttcacacatcgatctctctcgcaacagcatttcaggttctttccctacagctctttacaattgttcaaaccttcggtatctagacctctcatataacactttagttaattctctcccatccaacatcgatcggctatcaccaaggcttgtgtatctcaaccttgcatcgaatagtttatcagggaacatccctagttcaatcggccagcttaaagtgcttactaatctataccttgatgcaaaccaatttaacggctcctacccagcagaaattgggaatatttcagcacttcgagttctgcgcctaggcgacaatccatttctttctgggacaatctatccacagtttggaaatctaacaaacctggaatacttatccatgagtaaaatgaatatcattggcaaaattccagctgctatgtcaaaggctaacaatgtaatgttctttgatttatctggcaaccacctcagtgggtcgattcctagttggatttggagtctaaagaggctggtgaccctccaactatatgcaaaccacctgtctggccagattaatgcgccaattgaatcaacaaatttggttgagattgatgtttcatcgaataacctctcaggacagatcccagaggatatcggtcagcttgaggaactagaaagactgtttttgtccaacaatcatttcactggttcaatccccgatagcgttgccttgctcccaaaacttactaatgtgcagcttttccaaaactccttcgaaggcatcctgccacaagaactggggaagcattctttactctttaatttggaaacccattataacaatttctctggaacgttacccaagggtctttgctctaagggggcccttgcttatatctctatgtcagccaacatgttttccggtgagcttccagcatctctcttaagatgtaacagtttgaattatgtctggctttccaataataatttctcaggaacgtttccagctggcttaaccgaggtacagatccaagaggttaacttatctggcagattgcctagcaactgggcatcaaatctggtagaaattgaccttagcaataacaaattctcaggtagactcccaaacacaattaggtggctaaagtcacttggagtcctagatctttcagaaaacagattctctggccctattataccagaaattgaatttatgaacctaacttttctaaatctctctgataaccaattttctggccagattccccttctcttgcagaatgaaaaatttaaacagagtttcctgtccaatcttgggctgtgctcgtccaaccactttgcagactatccagtatgcaatgaacgacacttgaagaacagacttttgatcattttccttgcccttggtcttactagtgttttactgatatggttgtttggattactaaggataaaagtgttacccagaagacaaaacgaaaatactacaacaccgcggtggaaattgacagcatttcataacatcaattttaattaccaagacattatctgtggtctggctgataacaatctaatcgggagtggtggttcaggaaaggtatacaagatatgccttcataacaacagttacaggtttgtggctgccaagaagatagttagtgatcggagccggtccaatatgctggaaaagcattttcaagctgaggttgagattcttgggtccatccggcatgccagtgttgtcaggttgcttagttctatgtcatccactgaatcaaaagtgctgatctatgagtatatggaaaatggtagcttataccaatggttgcatcagaaagatatgcgtaataacaatgaaccattaagttggccaagaaggatgtcaattgccatagacgcagcaagaggactctgctacatgcaccatgattgttctccaccaatagctcactgtgatgtcaagccaagcaacatcctattggactatgagttcaaggcaaagattgcagatttaggtttagcccgtgcgctggctaaagccggagagccagagtccatctcaacaatggtcggatcatttggatacatggcaccagagtttggaagctcgagaaaaatcaatgagaaagttgatgtctacagttttggggtggttctcttggagctgacaacagggaggtttgcgaatggtgggggtgggtatgagaatttggcacaatgggcatggaggcgatttcaagatgaggacttccaattaattgatgtaattgatggagacatacaagatccagcctacttgcaggaggtgcaattagtgttcaagctaggactaatttgcacaggagcaaagccattatcaagaccttcaatgaaggaggtgttgcaggtcctacaacgctga
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| Protein seq | MGKVAAMDNPHLVHTILLAQSLLLFTCLFLHSNCETITRDDEKAILLSLERSWGGSVTVNWSSVIYEDQCNWPGINCTDGFVTGISLTGHGLNSLPAAICSLTKLSHIDLSRNSISGSFPTALYNCSNLRYLDLSYNTLVNSLPSNIDRLSPRLVYLNLASNSLSGNIPSSIGQLKVLTNLYLDANQFNGSYPAEIGNISALRVLRLGDNPFLSGTIYPQFGNLTNLEYLSMSKMNIIGKIPAAMSKANNVMFFDLSGNHLSGSIPSWIWSLKRLVTLQLYANHLSGQINAPIESTNLVEIDVSSNNLSGQIPEDIGQLEELERLFLSNNHFTGSIPDSVALLPKLTNVQLFQNSFEGILPQELGKHSLLFNLETHYNNFSGTLPKGLCSKGALAYISMSANMFSGELPASLLRCNSLNYVWLSNNNFSGTFPAGLTEVQIQEVNLSGRLPSNWASNLVEIDLSNNKFSGRLPNTIRWLKSLGVLDLSENRFSGPIIPEIEFMNLTFLNLSDNQFSGQIPLLLQNEKFKQSFLSNLGLCSSNHFADYPVCNERHLKNRLLIIFLALGLTSVLLIWLFGLLRIKVLPRRQNENTTTPRWKLTAFHNINFNYQDIICGLADNNLIGSGGSGKVYKICLHNNSYRFVAAKKIVSDRSRSNMLEKHFQAEVEILGSIRHASVVRLLSSMSSTESKVLIYEYMENGSLYQWLHQKDMRNNNEPLSWPRRMSIAIDAARGLCYMHHDCSPPIAHCDVKPSNILLDYEFKAKIADLGLARALAKAGEPESISTMVGSFGYMAPEFGSSRKINEKVDVYSFGVVLLELTTGRFANGGGGYENLAQWAWRRFQDEDFQLIDVIDGDIQDPAYLQEVQLVFKLGLICTGAKPLSRPSMKEVLQVLQR |
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| Function | Receptor-like protein kinase 5 [UniProtKB/Swiss-Prot:P47735] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_Ung0006880 | OsLima_Ung0006880.01 | ChrUN-Ctg77 | 18356 | 21262 | + | NAM | ||
| CDS seq | atgggcaaggtggctgccatggacaatccccaccttgttcatactatcctcctagcacaatctctgcttctcttcacctgcttgttcctccattccaattgtgaaacaatcactagggatgatgagaaggccatcctcctaagccttgaaagaagctggggaggttcggtgaccgtgaattggagctctgtcatatacgaagatcaatgtaattggccaggtatcaattgcacagatggctttgttacaggaatctcacttactggccatggactcaacagcttaccagcggctatctgttcattgacgaaactttcacacatcgatctctctcgcaacagcatttcaggttctttccctacagctctttacaattgttcaaaccttcggtatctagacctctcatataacactttagttaattctctcccatccaacatcgatcggctatcaccaaggcttgtgtatctcaaccttgcatcgaatagtttatcagggaacatccctagttcaatcggccagcttaaagtgcttactaatctataccttgatgcaaaccaatttaacggctcctacccagcagaaattgggaatatttcagcacttcgagttctgcgcctaggcgacaatccatttctttctgggacaatctatccacagtttggaaatctaacaaacctggaatacttatccatgagtaaaatgaatatcattggcaaaattccagctgctatgtcaaaggctaacaatgtaatgttctttgatttatctggcaaccacctcagtgggtcgattcctagttggatttggagtctaaagaggctggtgaccctccaactatatgcaaaccacctgtctggccagattaatgcgccaattgaatcaacaaatttggttgagattgatgtttcatcgaataacctctcaggacagatcccagaggatatcggtcagcttgaggaactagaaagactgtttttgtccaacaatcatttcactggttcaatccccgatagcgttgccttgctcccaaaacttactaatgtgcagcttttccaaaactccttcgaaggcatcctgccacaagaactggggaagcattctttactctttaatttggaaacccattataacaatttctctggaacgttacccaagggtctttgctctaagggggcccttgcttatatctctatgtcagccaacatgttttccggtgagcttccagcatctctcttaagatgtaacagtttgaattatgtctggctttccaataataatttctcaggaacgtttccagctggcttaaccgaggtacagatccaagaggttaacttatctggcagattgcctagcaactgggcatcaaatctggtagaaattgaccttagcaataacaaattctcaggtagactcccaaacacaattaggtggctaaagtcacttggagtcctagatctttcagaaaacagattctctggccctattataccagaaattgaatttatgaacctaacttttctaaatctctctgataaccaattttctggccagattccccttctcttgcagaatgaaaaatttaaacagagtttcctgtccaatcttgggctgtgctcgtccaaccactttgcagactatccagtatgcaatgaacgacacttgaagaacagacttttgatcattttccttgcccttggtcttactagtgttttactgatatggttgtttggattactaaggataaaagtgttacccagaagacaaaacgaaaatactacaacaccgcggtggaaattgacagcatttcataacatcaattttaattaccaagacattatctgtggtctggctgataacaatctaatcgggagtggtggttcaggaaaggtatacaagatatgccttcataacaacagttacaggtttgtggctgccaagaagatagttagtgatcggagccggtccaatatgctggaaaagcattttcaagctgaggttgagattcttgggtccatccggcatgccagtgttgtcaggttgcttagttctatgtcatccactgaatcaaaagtgctgatctatgagtatatggaaaatggtagcttataccaatggttgcatcagaaagatatgcgtaataacaatgaaccattaagttggccaagaaggatgtcaattgccatagacgcagcaagaggactctgctacatgcaccatgattgttctccaccaatagctcactgtgatgtcaagccaagcaacatcctattggactatgagttcaaggcaaagattgcagatttaggtttagcccgtgcgctggctaaagccggagagccagagtccatctcaacaatggtcggatcatttggatacatggcaccagagtttggaagctcgagaaaaatcaatgagaaagttgatgtctacagttttggggtggttctcttggagctgacaacagggaggtttgcgaatggtgggggtgggtatgagaatttggcacaatgggcatggaggcgatttcaagatgaggacttccaattaattgatgtaattgatggagacatacaagatccagcctacttgcaggaggtgcaattagtgttcaagctaggactaatttgcacaggagcaaagccattatcaagaccttcaatgaaggaggtgttgcaggtcctacaacgctga
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| Protein seq | MGKVAAMDNPHLVHTILLAQSLLLFTCLFLHSNCETITRDDEKAILLSLERSWGGSVTVNWSSVIYEDQCNWPGINCTDGFVTGISLTGHGLNSLPAAICSLTKLSHIDLSRNSISGSFPTALYNCSNLRYLDLSYNTLVNSLPSNIDRLSPRLVYLNLASNSLSGNIPSSIGQLKVLTNLYLDANQFNGSYPAEIGNISALRVLRLGDNPFLSGTIYPQFGNLTNLEYLSMSKMNIIGKIPAAMSKANNVMFFDLSGNHLSGSIPSWIWSLKRLVTLQLYANHLSGQINAPIESTNLVEIDVSSNNLSGQIPEDIGQLEELERLFLSNNHFTGSIPDSVALLPKLTNVQLFQNSFEGILPQELGKHSLLFNLETHYNNFSGTLPKGLCSKGALAYISMSANMFSGELPASLLRCNSLNYVWLSNNNFSGTFPAGLTEVQIQEVNLSGRLPSNWASNLVEIDLSNNKFSGRLPNTIRWLKSLGVLDLSENRFSGPIIPEIEFMNLTFLNLSDNQFSGQIPLLLQNEKFKQSFLSNLGLCSSNHFADYPVCNERHLKNRLLIIFLALGLTSVLLIWLFGLLRIKVLPRRQNENTTTPRWKLTAFHNINFNYQDIICGLADNNLIGSGGSGKVYKICLHNNSYRFVAAKKIVSDRSRSNMLEKHFQAEVEILGSIRHASVVRLLSSMSSTESKVLIYEYMENGSLYQWLHQKDMRNNNEPLSWPRRMSIAIDAARGLCYMHHDCSPPIAHCDVKPSNILLDYEFKAKIADLGLARALAKAGEPESISTMVGSFGYMAPEFGSSRKINEKVDVYSFGVVLLELTTGRFANGGGGYENLAQWAWRRFQDEDFQLIDVIDGDIQDPAYLQEVQLVFKLGLICTGAKPLSRPSMKEVLQVLQR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.040432 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0557700 | SBH | 0.598933 | 0.590169 | 0.291127 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g36320 | SBH | 0.405030 | 0.396938 | 0.074942 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0557700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0019510 | SBH | 0.198485 | 0.0 | 1.351500 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0019380 | SBH | 0.221716 | 0.760544 | 0.536992 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0019440 | SBH | 0.744108 | 1.576709 | 1.279144 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0019230 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0019630 | SBH | 3.064008 | 1.744134 | 2.297118 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0336800 | SBH | 0.9705835 | 1.380401 | 1.008749 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0019110 | SBH | 0.068427 | 0.000000 | 0.227858 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0311000 | SBH | 0.8961935 | 1.489733 | 1.724481 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0019550 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0019530 | SBH | 0.107853 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0019200 | SBH | 2.375903 | 2.232755 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0019880 | SBH | 0.032590 | 0.168832 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0019330 | SBH | 0.041473 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G019240 | SBH | 0.188146 | 0.0 | 0.946149 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0019410 | SBH | 0.0 | 3.195832 | 0.613725 |
