Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_Ung0005890 | OGI:99015270 | 1/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | ChrUN-Ctg60:106073-106514 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTATATTTGTCTGTCTTGTACTGAATGTCTCACATTGCAGCAATTGTTCTATCTTGACATCACCTAGTAACAAGTGGCGTATTGGGCACCCCTCTTTTATGACCTCCAATAATTTAACAGACCAATAATCCCTGTTTGCAATTGATGCATATATCATCTCTGAATCTGTCCTGGTATCAATCCCATCAATGGAAAACCTTGCCGCAGCACTACCATCACTAGGATTATTCTCACAGAAATCAAAAATGGAATCATAACCACATGTCTTAACCTTCCTATTCTGATTCTCACCAGCACCTCTAGCAATAATCCCAGAAATCCTTCTGACCCCAAAATGTACCCCCACTGGACAGTTAAACAACTGACCATTGTATAATATGTTTGTTGGGTTCTGTAGCCAGCTCTCAACATGATTAAGTGTCATGCGCATGGACTTACACAT
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| CDS seq | ATGTGTAAGTCCATGCGCATGACACTTAATCATGTTGAGAGCTGGCTACAGAACCCAACAAACATATTATACAATGGTCAGTTGTTTAACTGTCCAGTGGGGGTACATTTTGGGGTCAGAAGGATTTCTGGGATTATTGCTAGAGGTGCTGGTGAGAATCAGAATAGGAAGGTTAAGACATGTGGTTATGATTCCATTTTTGATTTCTGTGAGAATAATCCTAGTGATGGTAGTGCTGCGGCAAGGTTTTCCATTGATGGGATTGATACCAGGACAGATTCAGAGATGATATATGCATCAATTGCAAACAGGGATTATTGGTCTGTTAAATTATTGGAGGTCATAAAAGAGGGGTGCCCAATACGCCACTTGTTACTAGGTGATGTCAAGATAGAACAATTGCTGCAATTACAAGACAGACAAATATAG
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| Protein seq | MCKSMRMTLNHVESWLQNPTNILYNGQLFNCPVGVHFGVRRISGIIARGAGENQNRKVKTCGYDSIFDFCENNPSDGSAAARFSIDGIDTRTDSEMIYASIANRDYWSVKLLEVIKEGCPIRHLLLGDVKIEQLLQLQDRQI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_Ung0005890 | OsLima_Ung0005890.01 | ChrUN-Ctg60 | 106073 | 106514 | - | NAM | ||
| CDS seq | ATGTGTAAGTCCATGCGCATGACACTTAATCATGTTGAGAGCTGGCTACAGAACCCAACAAACATATTATACAATGGTCAGTTGTTTAACTGTCCAGTGGGGGTACATTTTGGGGTCAGAAGGATTTCTGGGATTATTGCTAGAGGTGCTGGTGAGAATCAGAATAGGAAGGTTAAGACATGTGGTTATGATTCCATTTTTGATTTCTGTGAGAATAATCCTAGTGATGGTAGTGCTGCGGCAAGGTTTTCCATTGATGGGATTGATACCAGGACAGATTCAGAGATGATATATGCATCAATTGCAAACAGGGATTATTGGTCTGTTAAATTATTGGAGGTCATAAAAGAGGGGTGCCCAATACGCCACTTGTTACTAGGTGATGTCAAGATAGAACAATTGCTGCAATTACAAGACAGACAAATATAG
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| Protein seq | MCKSMRMTLNHVESWLQNPTNILYNGQLFNCPVGVHFGVRRISGIIARGAGENQNRKVKTCGYDSIFDFCENNPSDGSAAARFSIDGIDTRTDSEMIYASIANRDYWSVKLLEVIKEGCPIRHLLLGDVKIEQLLQLQDRQI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g37790 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0017330 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0017330 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0020330 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0020050 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0020510 | SBH | 0.000000 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0352000 | SBH | 0 | 0.031603 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0019900 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0326400 | SBH | 0.1479445 | 0.2964675 | 1.599397 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0020400 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0020420 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0020040 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0036700 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0020180 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G020100 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0015640 | SBH | 0.000000 | 0.0 | 0.000000 |
