Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_Ung0005870 | OGI:99015230 | 1/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | ChrUN-Ctg60:97384-100075 | ||||||||
| Gene Symbol | SDRLK-5 | ||||||||||
| DNA seq | AAGTTTGGGCAGCTAGTTCCGATAACAGCTTGCATTGCTTGTCATTTGAAAGATCAGCTTGAATGCGGCAACCACCATGGATGCAATCTTCACCTCTCTGCTTCTCCTCACATTGATCCATCTGCTTTTGTACTCCTCCTCAGCTCTTGAATCCCTCTTGCCAGGCTCCCCTCTCTCTGTTGAACGCAGCTTGGATCTGCTCTACTCACCAGATCGTACTTTCACCTGTGGCTTCTACAATATCTCCCCCAATGCCTCCACCTTCTCCATCTGGTTCTCAAACTCCTCCGAGAAAACTGTTGTCTGGAGCGCAAATCCTCTCCACCCTGTGTACACATGGGAATCAAAATTTGAGTTGAAATCCGATGGCGGCATGCTGTTGAAAGATTATAATGGCCAGGTTGTGTGGACCAACAACGTGAGCTCTTCAAATGCGGAGCAAGTTCAAGCTAAGCTCTTGAATACTGGAAACCTCATCGTGAAGAGCAAAGGTGACACTATTCTATGGGAAAGCTTTGCTTTTCCTACTGATACCTTGCTACCCACTCAAAACATTACTGCTCGAATTAAGCTCATATCTACTAATAGATTACTTGCCCCTGGTCGCTTTAGTTTCCACTTTGATGATCAATATCTACTTTCGCTGTTTTATGATGAGAAGGATCTCTCGTTGATCTACTGGCCAGATCCAGCTCAGAATATCTGGGTGAAGCACAGAAAGTCGTTTAATAGCGCTGCAAACGGTGCTGTTGATAGCCAGGGACATTTTCTTGGAAGTGATGATGCAAACTTCACAGCTGCTGATTTGGGTCCTAGGATTATGAGGAGATTAACACTAGATTATGATGGCAATCTCAGGTTGTACAGTCTGAACGATTCAAGCGGAACATGGTCAGTCACATGGATGGCATTTCCTCAGCTCTGCAATGTACGTGGTGTGTGTGGTATAAATGGAATATGTGTGTATAGGCCTGCGCCTACATGTGTGTGTGCCCCTGGTTATCAGTTCAGTGACCCAAGCGATTGGAGCAAAGGCTGCAGCCCAAAGTTCAATATCACTAGAGAACAGAAAGTAAGGCTCCTTAGGCTCCCAAACACTGATTTCTTAGGGAATGATATAAGGGCTTATCCTCATGTTTCTTTGCACGATTGCAAGAAGATATGCTTGAATGACAGCAACTGTGTGGGGTTTGCATACTGGCAAGGAAGAGGTGATTGCTATCCGAAGACTGCTCTTCTTAGTGGTGTAAGCTTAATTGGTAGTAGTACTGGTACCATGTATATTAAGCTTCCTCAGGAATTAAAAGTGTCGGATCATCAAGTCCCCCGTTCACAGCCTTTTGATCAGAAATATGTCAAATACTGTACTACAGTTGACAAATATTTTGTACCGGATTTCTTGGATAAGCTTAAGAGCGGTCAAAATGAATCGAAGTATTGGTACTTCTATGGTTTCTTGTCAGCAATATTTGTTGCAGAGGTATTATTCATTATATTTGGATTACTTATTTTGCAAAGGGAGGACAAACAACTAAGAGAAATAGCTGAGGTTGGCTATGAAATGATAACCAACCATTTTCGCAGATACACCTACAGAGAGTTGGTGACAGCTACTAGAAGGTTTCAGGATGCAATTGGACAAGGAGCATCAGGCGTTGTATACAAGGGGGTCTTGAAGGACAAGAGGGTAGTAGCTGTGAAAAAGTTGCTAGACATAAACCAGGGGGAAGAAGAATTTAAGCATGAACTGAGTGTGATTGGCAGGATCTACCACATGAATCTAGTGAGGGTTTGGGGATTTTGTTCTGATGATTCACACAGGATGTTGGTTTCAGAATACGTGGAGAACGGTTCATTGGATAAAATATTGTTTGACAGTCAGGAATCACAAGCCTTACTAGAATGGGAGCAAAGATTTAAGATTGCTCTAGGTGTGGCTAAGGGATTGGCATATCTTCATCACGAGTGCTTGGAGTGGGTCATCCACTGTGACATAAAACCTGAAAATATACTGCTTGATGAGAATTTGGAGCCAAAGATAGCTGACTTTGGCCTTGCAAAGTTGCTACATAGAGGAGGATCCAATTTAAACGTGTCACGGATCCAAGGAACTAGAGGCTATTTAGCGCCTGAATGGGTTTCTAGTCTTCCGATAACAGCAAAGGTTGATGTCTACAGCTTTGGAGTGGTGCTTCTAGAACTACTAAAAGGAGCTCGTGTTTCGGACCTTGAAACAAACAAAGATGAGGAGGTGGAAATGGTTCTCGGAAGAATCATTAGAATGCTAGCAGAGAATCTGACGTCTGATGGGGATGAACAGTCATGGATTGCTGACTTCATTGACGCCAGATTAAACACTCGATTCAACAACTTGCAAGCAAGAGTGATGATGGAGCTTGCAGTTTCATGTCTGGAAGAAGACAGAGCCAGAAGACCCACCATGGAAAGTGTGGTGGAGATGCTTGTTTCTGTTGATGAAGCCGGTTGAACAATGTTGGAGTCTTCTATTTCTGGGTGAAGAGATCTGTCGTTTGACTGTGTGGTAAATTTTCTCGCAAGATATCATCTACTATACTACTATAAATGTGTCCAAGCCAGTGAATGTATCATTTTATTAATTATTATGTACTACATACACAATGTGTTGTTTTAGAAATAACAGTACTGGAACTAAAGTGCAATATTTTGTTGC
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| CDS seq | ATGGATGCAATCTTCACCTCTCTGCTTCTCCTCACATTGATCCATCTGCTTTTGTACTCCTCCTCAGCTCTTGAATCCCTCTTGCCAGGCTCCCCTCTCTCTGTTGAACGCAGCTTGGATCTGCTCTACTCACCAGATCGTACTTTCACCTGTGGCTTCTACAATATCTCCCCCAATGCCTCCACCTTCTCCATCTGGTTCTCAAACTCCTCCGAGAAAACTGTTGTCTGGAGCGCAAATCCTCTCCACCCTGTGTACACATGGGAATCAAAATTTGAGTTGAAATCCGATGGCGGCATGCTGTTGAAAGATTATAATGGCCAGGTTGTGTGGACCAACAACGTGAGCTCTTCAAATGCGGAGCAAGTTCAAGCTAAGCTCTTGAATACTGGAAACCTCATCGTGAAGAGCAAAGGTGACACTATTCTATGGGAAAGCTTTGCTTTTCCTACTGATACCTTGCTACCCACTCAAAACATTACTGCTCGAATTAAGCTCATATCTACTAATAGATTACTTGCCCCTGGTCGCTTTAGTTTCCACTTTGATGATCAATATCTACTTTCGCTGTTTTATGATGAGAAGGATCTCTCGTTGATCTACTGGCCAGATCCAGCTCAGAATATCTGGGTGAAGCACAGAAAGTCGTTTAATAGCGCTGCAAACGGTGCTGTTGATAGCCAGGGACATTTTCTTGGAAGTGATGATGCAAACTTCACAGCTGCTGATTTGGGTCCTAGGATTATGAGGAGATTAACACTAGATTATGATGGCAATCTCAGGTTGTACAGTCTGAACGATTCAAGCGGAACATGGTCAGTCACATGGATGGCATTTCCTCAGCTCTGCAATGTACGTGGTGTGTGTGGTATAAATGGAATATGTGTGTATAGGCCTGCGCCTACATGTGTGTGTGCCCCTGGTTATCAGTTCAGTGACCCAAGCGATTGGAGCAAAGGCTGCAGCCCAAAGTTCAATATCACTAGAGAACAGAAAGTAAGGCTCCTTAGGCTCCCAAACACTGATTTCTTAGGGAATGATATAAGGGCTTATCCTCATGTTTCTTTGCACGATTGCAAGAAGATATGCTTGAATGACAGCAACTGTGTGGGGTTTGCATACTGGCAAGGAAGAGGTGATTGCTATCCGAAGACTGCTCTTCTTAGTGGTGTAAGCTTAATTGGTAGTAGTACTGGTACCATGTATATTAAGCTTCCTCAGGAATTAAAAGTGTCGGATCATCAAGTCCCCCGTTCACAGCCTTTTGATCAGAAATATGTCAAATACTGTACTACAGTTGACAAATATTTTGTACCGGATTTCTTGGATAAGCTTAAGAGCGGTCAAAATGAATCGAAGTATTGGTACTTCTATGGTTTCTTGTCAGCAATATTTGTTGCAGAGGTATTATTCATTATATTTGGATTACTTATTTTGCAAAGGGAGGACAAACAACTAAGAGAAATAGCTGAGGTTGGCTATGAAATGATAACCAACCATTTTCGCAGATACACCTACAGAGAGTTGGTGACAGCTACTAGAAGGTTTCAGGATGCAATTGGACAAGGAGCATCAGGCGTTGTATACAAGGGGGTCTTGAAGGACAAGAGGGTAGTAGCTGTGAAAAAGTTGCTAGACATAAACCAGGGGGAAGAAGAATTTAAGCATGAACTGAGTGTGATTGGCAGGATCTACCACATGAATCTAGTGAGGGTTTGGGGATTTTGTTCTGATGATTCACACAGGATGTTGGTTTCAGAATACGTGGAGAACGGTTCATTGGATAAAATATTGTTTGACAGTCAGGAATCACAAGCCTTACTAGAATGGGAGCAAAGATTTAAGATTGCTCTAGGTGTGGCTAAGGGATTGGCATATCTTCATCACGAGTGCTTGGAGTGGGTCATCCACTGTGACATAAAACCTGAAAATATACTGCTTGATGAGAATTTGGAGCCAAAGATAGCTGACTTTGGCCTTGCAAAGTTGCTACATAGAGGAGGATCCAATTTAAACGTGTCACGGATCCAAGGAACTAGAGGCTATTTAGCGCCTGAATGGGTTTCTAGTCTTCCGATAACAGCAAAGGTTGATGTCTACAGCTTTGGAGTGGTGCTTCTAGAACTACTAAAAGGAGCTCGTGTTTCGGACCTTGAAACAAACAAAGATGAGGAGGTGGAAATGGTTCTCGGAAGAATCATTAGAATGCTAGCAGAGAATCTGACGTCTGATGGGGATGAACAGTCATGGATTGCTGACTTCATTGACGCCAGATTAAACACTCGATTCAACAACTTGCAAGCAAGAGTGATGATGGAGCTTGCAGTTTCATGTCTGGAAGAAGACAGAGCCAGAAGACCCACCATGGAAAGTGTGGTGGAGATGCTTGTTTCTGTTGATGAAGCCGGTTGA
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| Protein seq | MDAIFTSLLLLTLIHLLLYSSSALESLLPGSPLSVERSLDLLYSPDRTFTCGFYNISPNASTFSIWFSNSSEKTVVWSANPLHPVYTWESKFELKSDGGMLLKDYNGQVVWTNNVSSSNAEQVQAKLLNTGNLIVKSKGDTILWESFAFPTDTLLPTQNITARIKLISTNRLLAPGRFSFHFDDQYLLSLFYDEKDLSLIYWPDPAQNIWVKHRKSFNSAANGAVDSQGHFLGSDDANFTAADLGPRIMRRLTLDYDGNLRLYSLNDSSGTWSVTWMAFPQLCNVRGVCGINGICVYRPAPTCVCAPGYQFSDPSDWSKGCSPKFNITREQKVRLLRLPNTDFLGNDIRAYPHVSLHDCKKICLNDSNCVGFAYWQGRGDCYPKTALLSGVSLIGSSTGTMYIKLPQELKVSDHQVPRSQPFDQKYVKYCTTVDKYFVPDFLDKLKSGQNESKYWYFYGFLSAIFVAEVLFIIFGLLILQREDKQLREIAEVGYEMITNHFRRYTYRELVTATRRFQDAIGQGASGVVYKGVLKDKRVVAVKKLLDINQGEEEFKHELSVIGRIYHMNLVRVWGFCSDDSHRMLVSEYVENGSLDKILFDSQESQALLEWEQRFKIALGVAKGLAYLHHECLEWVIHCDIKPENILLDENLEPKIADFGLAKLLHRGGSNLNVSRIQGTRGYLAPEWVSSLPITAKVDVYSFGVVLLELLKGARVSDLETNKDEEVEMVLGRIIRMLAENLTSDGDEQSWIADFIDARLNTRFNNLQARVMMELAVSCLEEDRARRPTMESVVEMLVSVDEAG |
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| Function | Putative receptor protein kinase ZmPK1 [UniProtKB/Swiss-Prot:P17801] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_Ung0005870 | OsLima_Ung0005870.01 | ChrUN-Ctg60 | 97384 | 100075 | + | NAM | ||
| CDS seq | ATGGATGCAATCTTCACCTCTCTGCTTCTCCTCACATTGATCCATCTGCTTTTGTACTCCTCCTCAGCTCTTGAATCCCTCTTGCCAGGCTCCCCTCTCTCTGTTGAACGCAGCTTGGATCTGCTCTACTCACCAGATCGTACTTTCACCTGTGGCTTCTACAATATCTCCCCCAATGCCTCCACCTTCTCCATCTGGTTCTCAAACTCCTCCGAGAAAACTGTTGTCTGGAGCGCAAATCCTCTCCACCCTGTGTACACATGGGAATCAAAATTTGAGTTGAAATCCGATGGCGGCATGCTGTTGAAAGATTATAATGGCCAGGTTGTGTGGACCAACAACGTGAGCTCTTCAAATGCGGAGCAAGTTCAAGCTAAGCTCTTGAATACTGGAAACCTCATCGTGAAGAGCAAAGGTGACACTATTCTATGGGAAAGCTTTGCTTTTCCTACTGATACCTTGCTACCCACTCAAAACATTACTGCTCGAATTAAGCTCATATCTACTAATAGATTACTTGCCCCTGGTCGCTTTAGTTTCCACTTTGATGATCAATATCTACTTTCGCTGTTTTATGATGAGAAGGATCTCTCGTTGATCTACTGGCCAGATCCAGCTCAGAATATCTGGGTGAAGCACAGAAAGTCGTTTAATAGCGCTGCAAACGGTGCTGTTGATAGCCAGGGACATTTTCTTGGAAGTGATGATGCAAACTTCACAGCTGCTGATTTGGGTCCTAGGATTATGAGGAGATTAACACTAGATTATGATGGCAATCTCAGGTTGTACAGTCTGAACGATTCAAGCGGAACATGGTCAGTCACATGGATGGCATTTCCTCAGCTCTGCAATGTACGTGGTGTGTGTGGTATAAATGGAATATGTGTGTATAGGCCTGCGCCTACATGTGTGTGTGCCCCTGGTTATCAGTTCAGTGACCCAAGCGATTGGAGCAAAGGCTGCAGCCCAAAGTTCAATATCACTAGAGAACAGAAAGTAAGGCTCCTTAGGCTCCCAAACACTGATTTCTTAGGGAATGATATAAGGGCTTATCCTCATGTTTCTTTGCACGATTGCAAGAAGATATGCTTGAATGACAGCAACTGTGTGGGGTTTGCATACTGGCAAGGAAGAGGTGATTGCTATCCGAAGACTGCTCTTCTTAGTGGTGTAAGCTTAATTGGTAGTAGTACTGGTACCATGTATATTAAGCTTCCTCAGGAATTAAAAGTGTCGGATCATCAAGTCCCCCGTTCACAGCCTTTTGATCAGAAATATGTCAAATACTGTACTACAGTTGACAAATATTTTGTACCGGATTTCTTGGATAAGCTTAAGAGCGGTCAAAATGAATCGAAGTATTGGTACTTCTATGGTTTCTTGTCAGCAATATTTGTTGCAGAGGTATTATTCATTATATTTGGATTACTTATTTTGCAAAGGGAGGACAAACAACTAAGAGAAATAGCTGAGGTTGGCTATGAAATGATAACCAACCATTTTCGCAGATACACCTACAGAGAGTTGGTGACAGCTACTAGAAGGTTTCAGGATGCAATTGGACAAGGAGCATCAGGCGTTGTATACAAGGGGGTCTTGAAGGACAAGAGGGTAGTAGCTGTGAAAAAGTTGCTAGACATAAACCAGGGGGAAGAAGAATTTAAGCATGAACTGAGTGTGATTGGCAGGATCTACCACATGAATCTAGTGAGGGTTTGGGGATTTTGTTCTGATGATTCACACAGGATGTTGGTTTCAGAATACGTGGAGAACGGTTCATTGGATAAAATATTGTTTGACAGTCAGGAATCACAAGCCTTACTAGAATGGGAGCAAAGATTTAAGATTGCTCTAGGTGTGGCTAAGGGATTGGCATATCTTCATCACGAGTGCTTGGAGTGGGTCATCCACTGTGACATAAAACCTGAAAATATACTGCTTGATGAGAATTTGGAGCCAAAGATAGCTGACTTTGGCCTTGCAAAGTTGCTACATAGAGGAGGATCCAATTTAAACGTGTCACGGATCCAAGGAACTAGAGGCTATTTAGCGCCTGAATGGGTTTCTAGTCTTCCGATAACAGCAAAGGTTGATGTCTACAGCTTTGGAGTGGTGCTTCTAGAACTACTAAAAGGAGCTCGTGTTTCGGACCTTGAAACAAACAAAGATGAGGAGGTGGAAATGGTTCTCGGAAGAATCATTAGAATGCTAGCAGAGAATCTGACGTCTGATGGGGATGAACAGTCATGGATTGCTGACTTCATTGACGCCAGATTAAACACTCGATTCAACAACTTGCAAGCAAGAGTGATGATGGAGCTTGCAGTTTCATGTCTGGAAGAAGACAGAGCCAGAAGACCCACCATGGAAAGTGTGGTGGAGATGCTTGTTTCTGTTGATGAAGCCGGTTGA
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| Protein seq | MDAIFTSLLLLTLIHLLLYSSSALESLLPGSPLSVERSLDLLYSPDRTFTCGFYNISPNASTFSIWFSNSSEKTVVWSANPLHPVYTWESKFELKSDGGMLLKDYNGQVVWTNNVSSSNAEQVQAKLLNTGNLIVKSKGDTILWESFAFPTDTLLPTQNITARIKLISTNRLLAPGRFSFHFDDQYLLSLFYDEKDLSLIYWPDPAQNIWVKHRKSFNSAANGAVDSQGHFLGSDDANFTAADLGPRIMRRLTLDYDGNLRLYSLNDSSGTWSVTWMAFPQLCNVRGVCGINGICVYRPAPTCVCAPGYQFSDPSDWSKGCSPKFNITREQKVRLLRLPNTDFLGNDIRAYPHVSLHDCKKICLNDSNCVGFAYWQGRGDCYPKTALLSGVSLIGSSTGTMYIKLPQELKVSDHQVPRSQPFDQKYVKYCTTVDKYFVPDFLDKLKSGQNESKYWYFYGFLSAIFVAEVLFIIFGLLILQREDKQLREIAEVGYEMITNHFRRYTYRELVTATRRFQDAIGQGASGVVYKGVLKDKRVVAVKKLLDINQGEEEFKHELSVIGRIYHMNLVRVWGFCSDDSHRMLVSEYVENGSLDKILFDSQESQALLEWEQRFKIALGVAKGLAYLHHECLEWVIHCDIKPENILLDENLEPKIADFGLAKLLHRGGSNLNVSRIQGTRGYLAPEWVSSLPITAKVDVYSFGVVLLELLKGARVSDLETNKDEEVEMVLGRIIRMLAENLTSDGDEQSWIADFIDARLNTRFNNLQARVMMELAVSCLEEDRARRPTMESVVEMLVSVDEAG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.473715 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0575400 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g37750 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0575400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0020390 | SBH | 0.0 | 5.135395 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0020220 | SBH | 0.0 | 4.165461 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0020310 | SBH | 0.0 | 11.957283 | 1.399287 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0020030 | SBH | 0.0 | 0.682405 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0020490 | SBH | 0.394141 | 17.783972 | 0.245292 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0351700 | SBH | 0.044346 | 13.2544995 | 0.46186 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0019880 | SBH | 0.0 | 1.110312 | 0.170889 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0326100 | SBH | 0.1599925 | 6.215329 | 1.976847 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0020380 | RBH | 0.0 | 0.075482 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0020400 | SBH | 0.0 | 16.065012 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0020020 | SBH | 0.0 | 11.665655 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0020700 | SBH | 0.028563 | 0.458291 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0020160 | SBH | 0.0 | 10.674402 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G020080 | SBH | 0.0 | 5.498586 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0020290 | SBH | 0.0 | 18.409031 | 0.0 |
