Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_Ung0005850 | OGI:99015190 | 1/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | ChrUN-Ctg60:76479-77201 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCCGCCGCCGGTGCGATACTGCGGCGTTCTGGAAGACTACGAGCAACAGGTGGACGAGGAGCCACCCTCGCCCAAGTCGCCCAGCCGGGTCTCTTCCCCGCTGCCGCTGCCGGAGCAGAAGCTGTCCGCCGCATACCGCGCGGAGCTCCGGCGACAAAACGCCCTCATAAACAACGGCCCACGCTACAGGTTTCGCCGCCCCGGCGAAAAGAGGAGGAGGAAGAAGAAGAAGAAACACAACAAGTCCAAGCACCACCACACGCCGCCGCCGCCTTCTCCAACGCCGAGGCCGAGCCCGCCTTCGCCGATCTGCCCCTACGAGGAATATCCGACCTTCGAACCCGACGACCCAGTCTGGATGCGGCAGAGCACGATGTACGCGGAGGCGGCGCTGGAGCACTACAACGCCGCCGTCGACGTCGGCGGTGGCGGCGTCAAGTACGAGCTCGTCAGGGCCATCTTCAGCGGCGCCATCTTCACCTGCAAGGCCGCCTACGGCCACGTACGTCAACTTCATCGCCAGGGCCATTGGCGGCGGCAGCTCGTGCGACCAGCGGCTCTTCTTCGCCGAGGTGCGCAAGGACAAGAAACGGTATATCCCGACGTGCCTCTGGTCCCTGGACGACGAGGCCGACCGAGTCGGCGGCGCCGGCGCCGACCCGCAGGTGGACCTGCCGGAGATCACCTCGCCGTCGCGGAGGAACTACTGCTTCAGCTGTGA
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| CDS seq | ATGCCGCCGCCGGTGCGATACTGCGGCGTTCTGGAAGACTACGAGCAACAGGTGGACGAGGAGCCACCCTCGCCCAAGTCGCCCAGCCGGGTCTCTTCCCCGCTGCCGCTGCCGGAGCAGAAGCTGTCCGCCGCATACCGCGCGGAGCTCCGGCGACAAAACGCCCTCATAAACAACGGCCCACGCTACAGGTTTCGCCGCCCCGGCGAAAAGAGGAGGAGGAAGAAGAAGAAGAAACACAACAAGTCCAAGCACCACCACACGCCGCCGCCGCCTTCTCCAACGCCGAGGCCGAGCCCGCCTTCGCCGATCTGCCCCTACGAGGAATATCCGACCTTCGAACCCGACGACCCAGTCTGGATGCGGCAGAGCACGATGTACGCGGAGGCGGCGCTGGAGCACTACAACGCCGCCGTCGACGTCGGCGGTGGCGGCGTCAAGTACGAGCTCGTCAGGGCCATCTTCAGCGGCGCCATCTTCACCTGCAAGGCCGCCTACGGCCACGTACGTCAACTTCATCGCCAGGGCCATTGGCGGCGGCAGCTCGTGCGACCAGCGGCTCTTCTTCGCCGAGGTGCGCAAGGACAAGAAACGGTATATCCCGACGTGCCTCTGGTCCCTGGACGACGAGGCCGACCGAGTCGGCGGCGCCGGCGCCGACCCGCAGGTGGACCTGCCGGAGATCACCTCGCCGTCGCGGAGGAACTACTGCTTCAGCTGTGA
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| Protein seq | MPPPVRYCGVLEDYEQQVDEEPPSPKSPSRVSSPLPLPEQKLSAAYRAELRRQNALINNGPRYRFRRPGEKRRRKKKKKHNKSKHHHTPPPPSPTPRPSPPSPICPYEEYPTFEPDDPVWMRQSTMYAEAALEHYNAAVDVGGGGVKYELVRAIFSGAIFTCKAAYGHVRQLHRQGHWRRQLVRPAALLRRGAQGQETVYPDVPLVPGRRGRPSRRRRRRPAGGPAGDHLAVAEELLLQL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_Ung0005850 | OsLima_Ung0005850.01 | ChrUN-Ctg60 | 76479 | 77201 | + | NAM | ||
| CDS seq | ATGCCGCCGCCGGTGCGATACTGCGGCGTTCTGGAAGACTACGAGCAACAGGTGGACGAGGAGCCACCCTCGCCCAAGTCGCCCAGCCGGGTCTCTTCCCCGCTGCCGCTGCCGGAGCAGAAGCTGTCCGCCGCATACCGCGCGGAGCTCCGGCGACAAAACGCCCTCATAAACAACGGCCCACGCTACAGGTTTCGCCGCCCCGGCGAAAAGAGGAGGAGGAAGAAGAAGAAGAAACACAACAAGTCCAAGCACCACCACACGCCGCCGCCGCCTTCTCCAACGCCGAGGCCGAGCCCGCCTTCGCCGATCTGCCCCTACGAGGAATATCCGACCTTCGAACCCGACGACCCAGTCTGGATGCGGCAGAGCACGATGTACGCGGAGGCGGCGCTGGAGCACTACAACGCCGCCGTCGACGTCGGCGGTGGCGGCGTCAAGTACGAGCTCGTCAGGGCCATCTTCAGCGGCGCCATCTTCACCTGCAAGGCCGCCTACGGCCACGTACGTCAACTTCATCGCCAGGGCCATTGGCGGCGGCAGCTCGTGCGACCAGCGGCTCTTCTTCGCCGAGGTGCGCAAGGACAAGAAACGGTATATCCCGACGTGCCTCTGGTCCCTGGACGACGAGGCCGACCGAGTCGGCGGCGCCGGCGCCGACCCGCAGGTGGACCTGCCGGAGATCACCTCGCCGTCGCGGAGGAACTACTGCTTCAGCTGTGA
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| Protein seq | MPPPVRYCGVLEDYEQQVDEEPPSPKSPSRVSSPLPLPEQKLSAAYRAELRRQNALINNGPRYRFRRPGEKRRRKKKKKHNKSKHHHTPPPPSPTPRPSPPSPICPYEEYPTFEPDDPVWMRQSTMYAEAALEHYNAAVDVGGGGVKYELVRAIFSGAIFTCKAAYGHVRQLHRQGHWRRQLVRPAALLRRGAQGQETVYPDVPLVPGRRGRPSRRRRRRPAGGPAGDHLAVAEELLLQL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.046668 | 0.084031 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0575100 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g37700 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0575100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0020370 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0020200 | SBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0020300 | SBH | 0.000000 | 0.000000 | 0.271519 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0020020 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0020480 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0019870 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0325700 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0020370 | SBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0020390 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0020010 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0020700 | SBH | 0.028563 | 0.458291 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0020150 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G020070 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0020270 | SBH | 0.292005 | 0.857760 | 0.380237 |
