Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_Ung0005350 | OGI:99014510 | 1/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | ChrUN-Ctg55:126503-130748 | ||||||||
| Gene Symbol | RLCK277, OsRLCK277 | ||||||||||
| DNA seq | gtctcgttccctcgtactagctcgtctcgtctcttctctaccccaatcccgttctctccctttCcccccaccccacccccaaccccgtgccgcggcctcgccgatcgatcgatcgtgcgctccacctcctcgagctccctccctcgccgccgccgccgccgcgcgccgccggttcgacgccttcttcgcgctctcaggtgaaatcatcttctctctcaggttcaggaatgaatgcgtgggggatgggggttgatcggtttcggctagggggtgctggattggtgggtggggggtggcgcaatgctgctgcggcggggtggcgtttttgccgggtcgaggcgggcggaattgtggggaatttttttttttttgcgtgcgcaattttgacgtggctcgggatgatggctgggtggcgtacggcggcgtgagctagggggaactcgcagcggcgccgggggtgggtttcgttggtggtttgtgtgagtcatttgtctcatcgagctccaagtttggaggtggtgttatgctgttttagcactggaggttttgtagtacggacttgcttggatgtggaggatatggtcatgtttttgttgattcccggaggccacctcttgtttctgatttccttttggtttgtgtcattggttcatcaggtagcggtagacactgaacatgatgattcaattggtgtgacggatgagtctggttggccatgcatagaattagacaggcggatgcgtaggttagtaaaatatccatgtgaatgaagctgagcgacaactgaaacaaaaataaatgcaggaccaaacttgatgttgattgggacataggcatgtgaaatttgcccatgttcacaggatgaacggcagaaacccagaaaagaacataaaattggaacatgaaaatgatagttcacttgcttgggtggttggcaatcggcagaagaggatgcaatccctctcccttaatcgcactgcctatccatgattaatgtccatgtgcttcagtactagatttttttttaatttggaccacttcagttctgattatgagttttgtcattgaagtattaatgttcttagctgtatcggtgctaatgtgctgtcttttcctccttttctgaacttaaggcatagaaaggaggaagaaacaaaggatacatcattatgttgcgacgctggttctgctgcactcagtttcacgcaccatatcgtgaacacgaaaatgaatttcctgacatcccagaggagaaagaaggtatctttcttattgagcgcccctccttattctttttccttttttgagcagctatcttcaagtttatggtattgtatggtctcaactcccaagtagtcaagttgaggaaaaaattgctgaggtgttcacatcatcattgttcattctatatgaactaaactttagtctgtccaaggttgctatactagatgtcagtgcattttcagcatagttgtcagaaccattctttttcccccatggccttatcagttgaactgcacaattccttgcatggtagtagtatttttatcttgattttctttaatgctaaaaacaaggtcttgtattatatatccgcgaatgcttcatatcctgttgtatttttgcctttgagacctaaacctatttgtcaacatttggctagcaggaaatggttttgctcccaaaagtgatgatcccacaaaagcacctcctcccattgaagtaccagaattatcatttgatgaactgaaagagaagactgataattttggttcaaaggctttagttggtgaaggatcatatggaagagtgtattatgctactctagacaacggaaagcaagttgctgttaaaaagcttgatgcttcaacagaacctgaggttgataatgattttttgacacaggtatggttaatgattatataatcatatgcagctcttgccaattatatgcattctgctattcgatgtttggaataaggttttactctaaaccttacttttcatttctattggcataggtgtccattgtgtcaagattaagacatgaaaattttgtggaaatgcttggttactgtgtggaaggaaatcagcgcctagtggcctacgaatttgctacgatgggttctttgcatgatattttgcatggtatgagaaatatgcctttacggtaaaaaaatgccatcgtatctcactaaacacatacaagccttttaatataattgtgtatataatatagatacttcaaggtttaagttggttgcctgtttcttttgtaataactcaaaataattcatatatagcagtgctctgatattgtttttgtttttcacatccttgtcatacataaggaagaaagggtgtccctggtgcacaacctggcccagcacttgactggatgcagcgagtgagaattgctattgatgctgctaaagggctagaatatcttcatgagaaggtccaaccttctatagtccatcgggacatacgctctagcaatgttcttctatttgaggactacaaagcaaaaattgcagatttcaatccttcaaatcagtctcctgatatggctgctcgtttgcactcaactcgtgtccttggaaccttcggctatcatgctcccgagtaattgctctactcaagtacttgaatagtttatgcatttcttttttttcccaagcaaaatatttaatcaccttttttgctataatagattactctgtaatatatattgctagaagatgatagtgttctgccttcaatattttgtactgttgattgagtggctgtagcatccaggcaattcttaaatatatctaaacaagaccaatagttctatgaataactgaagttcccattatttgttaccatgcttgttaatcattcactcagtcatgtatcctttgttctcactccatgcaggtatgccatgactggccagttgactcagaaaagtgatgtatatagttttggagttgttcttctagagcttctaacaggaaggaaaccagtagatcacacaatgcctaggggtcagcagagtctggttacatgggtaagcattttatttgtaaatttactacaatatttaacatgagagctgtttgcctcagctattggtaaaaggagaattactttgttgataagatcactctagaataaaacgaagaaaaatgtggtcttaataacaaattactaggcatccagctcagatggactgaagttaaggttttgaatggtacttcaaagaatctctcagactagactttgcacgttaatgattcttcattcaacaaggctttcaaaccaaacagaattttattgtcctttgagaaactatactatttttactgtcactgtgcatagatgctattctatcgtgttatgtaacacaccattctaagttgtgtacaagctgctctgcatatttctgattagctcttgttactactttctttgtacgcaggcaacacctcgtttgacagaggacactgtgaaacaatgcgttgacccgagactgaagggcgagtatcccccaaaaggggttgccaaggtctgcctccctcctcccttccctttaaatgcacaagcactctcttgtatggtcactgtgtggagccaagcaacatcgtaaccaaaatttgagcccaatggtttccatctgtttattgcagctcgcagcggtggcggcactctgtgtgcaatacgagtctgagtttagaccaagcatgagcattgtggtcaaggcactctcccctcttctccagcataaaccgccactgccaccagccgttgctcctgagacctgagctccagattcaactgcttcttatgcttttacttccgagtttcaacatggatgtaaagagggatggaatttcttcatcggtccctgtcgttactgtttcatgcttgccaattggttaccatgccgtttaagtactggtcctgtgagctttacaatagatttttggtgtttacactcggagctttccttgtcattcctttcatgtgtgcttatgctgagtgctgtgctgccttcgttggtcggcaaagttgtgtttttagctgcccagcggtggtgatcaccgaataatcttgttctgagttgaactgtgacatgggaaggttctaaatctaactgttcatggcttgacatgcttttggtgtgtgcctacgtgagaggatgatggttcttcactttgttaacatgtgagttatgaatggatgcttttggcttgctaca
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| CDS seq | atgttgcgacgctggttctgctgcactcagtttcacgcaccatatcgtgaacacgaaaatgaatttcctgacatcccagaggagaaagaaggaaatggttttgctcccaaaagtgatgatcccacaaaagcacctcctcccattgaagtaccagaattatcatttgatgaactgaaagagaagactgataattttggttcaaaggctttagttggtgaaggatcatatggaagagtgtattatgctactctagacaacggaaagcaagttgctgttaaaaagcttgatgcttcaacagaacctgaggttgataatgattttttgacacaggtgtccattgtgtcaagattaagacatgaaaattttgtggaaatgcttggttactgtgtggaaggaaatcagcgcctagtggcctacgaatttgctacgatgggttctttgcatgatattttgcatggaagaaagggtgtccctggtgcacaacctggcccagcacttgactggatgcagcgagtgagaattgctattgatgctgctaaagggctagaatatcttcatgagaaggtccaaccttctatagtccatcgggacatacgctctagcaatgttcttctatttgaggactacaaagcaaaaattgcagatttcaatccttcaaatcagtctcctgatatggctgctcgtttgcactcaactcgtgtccttggaaccttcggctatcatgctcccgagtatgccatgactggccagttgactcagaaaagtgatgtatatagttttggagttgttcttctagagcttctaacaggaaggaaaccagtagatcacacaatgcctaggggtcagcagagtctggttacatgggcaacacctcgtttgacagaggacactgtgaaacaatgcgttgacccgagactgaagggcgagtatcccccaaaaggggttgccaagctcgcagcggtggcggcactctgtgtgcaatacgagtctgagtttagaccaagcatgagcattgtggtcaaggcactctcccctcttctccagcataaaccgccactgccaccagccgttgctcctgagacctga
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| Protein seq | MLRRWFCCTQFHAPYREHENEFPDIPEEKEGNGFAPKSDDPTKAPPPIEVPELSFDELKEKTDNFGSKALVGEGSYGRVYYATLDNGKQVAVKKLDASTEPEVDNDFLTQVSIVSRLRHENFVEMLGYCVEGNQRLVAYEFATMGSLHDILHGRKGVPGAQPGPALDWMQRVRIAIDAAKGLEYLHEKVQPSIVHRDIRSSNVLLFEDYKAKIADFNPSNQSPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLTEDTVKQCVDPRLKGEYPPKGVAKLAAVAALCVQYESEFRPSMSIVVKALSPLLQHKPPLPPAVAPET |
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| Function | PTI1-like tyrosine-protein kinase 3 [UniProtKB/Swiss-Prot:B9DFG5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_Ung0005350 | OsLima_Ung0005350.01 | ChrUN-Ctg55 | 126503 | 130748 | + | NAM | ||
| CDS seq | atgttgcgacgctggttctgctgcactcagtttcacgcaccatatcgtgaacacgaaaatgaatttcctgacatcccagaggagaaagaaggaaatggttttgctcccaaaagtgatgatcccacaaaagcacctcctcccattgaagtaccagaattatcatttgatgaactgaaagagaagactgataattttggttcaaaggctttagttggtgaaggatcatatggaagagtgtattatgctactctagacaacggaaagcaagttgctgttaaaaagcttgatgcttcaacagaacctgaggttgataatgattttttgacacaggtgtccattgtgtcaagattaagacatgaaaattttgtggaaatgcttggttactgtgtggaaggaaatcagcgcctagtggcctacgaatttgctacgatgggttctttgcatgatattttgcatggaagaaagggtgtccctggtgcacaacctggcccagcacttgactggatgcagcgagtgagaattgctattgatgctgctaaagggctagaatatcttcatgagaaggtccaaccttctatagtccatcgggacatacgctctagcaatgttcttctatttgaggactacaaagcaaaaattgcagatttcaatccttcaaatcagtctcctgatatggctgctcgtttgcactcaactcgtgtccttggaaccttcggctatcatgctcccgagtatgccatgactggccagttgactcagaaaagtgatgtatatagttttggagttgttcttctagagcttctaacaggaaggaaaccagtagatcacacaatgcctaggggtcagcagagtctggttacatgggcaacacctcgtttgacagaggacactgtgaaacaatgcgttgacccgagactgaagggcgagtatcccccaaaaggggttgccaagctcgcagcggtggcggcactctgtgtgcaatacgagtctgagtttagaccaagcatgagcattgtggtcaaggcactctcccctcttctccagcataaaccgccactgccaccagccgttgctcctgagacctga
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| Protein seq | MLRRWFCCTQFHAPYREHENEFPDIPEEKEGNGFAPKSDDPTKAPPPIEVPELSFDELKEKTDNFGSKALVGEGSYGRVYYATLDNGKQVAVKKLDASTEPEVDNDFLTQVSIVSRLRHENFVEMLGYCVEGNQRLVAYEFATMGSLHDILHGRKGVPGAQPGPALDWMQRVRIAIDAAKGLEYLHEKVQPSIVHRDIRSSNVLLFEDYKAKIADFNPSNQSPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLTEDTVKQCVDPRLKGEYPPKGVAKLAAVAALCVQYESEFRPSMSIVVKALSPLLQHKPPLPPAVAPET
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.158049 | 0.223031 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0513600 | SBH | 3.179189 | 0.955040 | 10.115330 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g33860 | SBH | 2.089821 | 0.834646 | 2.661623 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0513600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0016390 | SBH | 0.445333 | 13.439536 | 12.606726 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0016380 | SBH | 0.464338 | 7.033113 | 2.544299 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0016630 | SBH | 0.480213 | 30.749866 | 15.681616 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0016370 | SBH | 0.270184 | 0.923146 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0016500 | SBH | 5.284506 | 10.950191 | 33.296455 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0336500 | SBH | 6.7120815 | 21.0566035 | 13.6460555 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0016370 | SBH | 0.192029 | 1.276342 | 2.208008 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0323500 | SBH | 8.15776 | 25.5924845 | 10.062776 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0016370 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0016180 | SBH | 0.620801 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0016280 | SBH | 0.000000 | 5.935748 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0016130 | SBH | 1.607554 | 0.0 | 1.899925 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0016260 | SBH | 0.406488 | 19.943939 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G016690 | SBH | 0.065691 | 4.428101 | 7.586481 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0016490 | SBH | 0.750049 | 23.164211 | 12.823390 |
