Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_Ung0004320 | OGI:99012890 | 1/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | ChrUN-Ctg47:8170-11427 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGGTTCTTTGGCAGGGCCACTTAACCATCTTATCAGCAGGCTCACCGATCTGATATGCAAGGAGTATGCCAAGCTCAAAGGTGTCCAGAAGCAGGCAAGATCGCTAACCAAGGAGTTGATCTCTATTGACATCGCACTAGACGAATATACGAGGATGGAGGAACCAGACATGCAGGTGAAGGCATGGATGAAGGAGGTGCAGGAACTAGCCTATGATATCGAGGACTGCATAGATATCTTCGCCTATCGTATCAACCATGAGACATCTAGTGAAGCCACCAGCATCATGGGTTTACTCCGCAAGAACATCCGTAAGGTGAAGAAACTtcactacaaacataagtttgctgatcaaattcagcaactgaagacccttgcaaatgaagtatatgaacggcgaatcaaatacaggcttgatgagtgcactacttttcccatgcataaggaggtggatccccgattggcgtttctttatgtgggagaagacaaacttgtgggcattgagagccccacagaagagattatcagtcggattattgagaagcgaaacagaccattgaagcaatgccgggttgtctctgttgttggacctggaggtttgggaaaaactactctcgctaatcaagtctaccagcgaataaaaggtcaatttgattgtacggcttttgtctctgtatcacgaaagcctgacatgaatcatctcctttggggaatgttatctgaagttgacagcaccgggcagttgccagggttatataatgaccggcaactcatcaatagattgagggaatgccttgtaaataaaaggtaacagtttcaagttcttatttaactttgtaggatgtttgactagacgtgttgaattataccattattaccattctgttctggtacactattctggtatatgaaatgcagagttgcaaacacatttaactaacagagatttagtaaagatacttgtagtatttataatgttcatgaatatgtaaatagaaatattgttatgttcttttttttttgttgttgaataatagtattaagaagtttgaactatgttgatgcatgtaaattcttgcttgcaaaataggtacctcattgtaattgatgatatttggagcaagtcagcatgggaaactattcaatgtgcatttcctaagaatgcttgtggtagtataataattatgaccacacgcatcaatactgtggctaaatgttgttgctcttcagatgaagattttgtctataaaatgcaacatcttaataaaagagactccaaaagtttgttcctgaaaagaacttttggttccaaggataaatgccctcttcaactggaacagattatggatgaaatattacagaagtgtgatggtttgcctttggctataattaccatagcaagtttgttagccgataaaccaaaaacaaaggcagaatggacaagagccggaattcaataggttctatgcgtgagaaggacattgaactagaagtgatagacaagataatttctctcagttattgtgatctacctcgcaatataaaaacctgcttattgtacctcagtatttttccagaagatagtgaaatcagcagagattgtttgatatggagatggatagctgaaggctttattgtagcaaaacatggttatagcttgaaagaactaggggagagttacttcaatgagctcataaacaggagcatgatccagccagtgcacatggattatggtggaacggctaggtcttgtcgagttcatgatataattcttgacttcattatcaccaagtcaactgaagaaaatttagtcacgatattggacggTCAAGACTTCTCAACATCTTCAAGTGACAAGATTCGCAGGCTCTCAATACGCAAGAAGAAAAAGATAGTAGATCCAGGAATTGTTGAATTCAGATTTACTAATGACAATGACATGGTCAATTTCTTCTGGGATACTGAATTTGATGAAGGTACATTGCTACAGGAAACTATGAGCTTCTCTCATCTCAGGTCTCTTACTCTCTTCGGTCCTGTTAACTGGATGCCCCCTCTGTTGGACCGACATGTTTTACGAGTATTAGATCTACATGGTTGTCACCATATGATGAATGATCATATTGAGGATATTGGAAATTTATGTCAGTTGAGGTATCTGGGCCTCGGACGGACATATATCAAGATACTCCCTGTTCAAATCAGAAAGCTTGAGTTTTTGCAGACTATTGATATAAGAGGTACTTGTGTACAAGAGCTGCCAAGAAGCATTACTGAACTTAAAACAATTGATGCGTCTGGAATCAGACTCGATTGAACTTCCAGATGGGTTTGCTAACATGGCAGCTCTGCAGGAACTATCCTGGCTTCATGTCTGTAAAATCTCTAGAAACTTTGCACAAGATTTGGGAAATTTGAGCAATTTAAGAGTGCTGAAAATTATCTTGCATCCTCAATTTCTTTCCTATTGTCAGGAAATCTACCAAGAATCTTTGGTGTCATCCCTCTGTAAACTGGGAGAGCATAACCTTCGGTATCTGCATATTAAGCACAATGCAGGTGAAATAGATTTCTTGGTGGATTCATGGTGGCCTCCCCCACGTCTCCTCCAAAAATTTGTGATGAATGGTTTCTGTTACTTCTCTAGGTTTCCAAAGTGGATCAATTCCTCACTCTCTGAGCTCTCCTACTTGGACATTGATGTCAAGGTGATCGCAGAGGAAGAGCTAAATATGCTTGGAGGCTTGCCTTCTCTTCGTGTCCTCCGTCTATTCTTAAACAGAATTCCCGAAGAAGGATTCACAGTCAGCTCTGGTGGATTCCAATATTTATCAGAGTTTCACTTGCATAATGGTCATGGACCAGGCATAAAGTTTAAAGCAGGAGCTATGCCGAACGTTCAGGTCCTTGTATGCAGTTTCCATGCATGCGAATCAGTACGGGTATATGGTGATTTTGACTTCGGTGTCCAACACCTTTCATCTCTCGGTCGTATCAATGTCGAGATTTGTTATACAGATGAAAGAGTTGTCTTTTTGTTGGAGGCTGCAGAGTCTGCCATCAAGAATGAGATCAAGCTTCTTCCCAAGCATCCAATGTTTATGATTAGAAGGAAGTTTAATAGAAATTCCTGTATGTATTATGCATGATATGGATAATGACGACCACAAAGAGCTTGAGGAATCAACTGGGAGGAATGTACTCTAATCCTCCTTGGTATTAATTACCTTGTTATCACTAAACAGTTCATCCATCC
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| CDS seq | ATGGGTTCTTTGGCAGGGCCACTTAACCATCTTATCAGCAGGCTCACCGATCTGATATGCAAGGAGTATGCCAAGCTCAAAGGTGTCCAGAAGCAGGCAAGATCGCTAACCAAGGAGTTGATCTCTATTGACATCGCACTAGACGAATATACGAGGATGGAGGAACCAGACATGCAGGTGAAGGCATGGATGAAGGAGGTGCAGGAACTAGCCTATGATATCGAGGACTGCATAGATATCTTCGCCTATCGTATCAACCATGAGACATCTAGTGAAGCCACCAGCATCATGGGTTTACTCCGCAAGAACATCCGTAAGGTGAAGAAACTtcactacaaacataagtttgctgatcaaattcagcaactgaagacccttgcaaatgaagtatatgaacggcgaatcaaatacaggcttgatgagtgcactacttttcccatgcataaggaggtggatccccgattggcgtttctttatgtgggagaagacaaacttgtgggcattgagagccccacagaagagattatcagtcggattattgagaagcgaaacagaccattgaagcaatgccgggttgtctctgttgttggacctggaggtttgggaaaaactactctcgctaatcaagtctaccagcgaataaaaggtcaatttgattgtacggcttttgtctctgtatcacgaaagcctgacatgaatcatctcctttggggaatgttatctgaagttgacagcaccgggcagttgccagggttatataatgaccggcaactcatcaatagattgagggaatgccttgtaaataaaaggtacctcattgtaattgatgatatttggagcaagtcagcatgggaaactattcaatgtgcatttcctaagaatgcttgtgatgaagattttgtctataaaatgcaacatcttaataaaagagactccaaaagtttgttcctgaaaagaacttttggttccaaggataaatgccctcttcaactggaacagattatggatgaaatattacagaagtgtgatggcagaatggacaagagccggaattcaataggttctatgcgtgagaaggacattgaactagaagtgatagacaagataatttctctcagttattgtgatctacctcgcaatataaaaacctgcttattgtacctcagtatttttccagaagatagtgaaatcagcagagattgtttgatatggagatggatagctgaaggctttattgtagcaaaacatggttatagcttgaaagaactaggggagagttacttcaatgagctcataaacaggagcatgatccagccagtgcacatggattatggtggaacggctaggtcttgtcgagttcatgatataattcttgacttcattatcaccaagtcaactgaagaaaatttagtcacgatattggacggTCAAGACTTCTCAACATCTTCAAGTGACAAGATTCGCAGGCTCTCAATACGCAAGAAGAAAAAGATAGTAGATCCAGGAATTGTTGAATTCAGATTTACTAATGACAATGACATGGTCAATTTCTTCTGGGATACTGAATTTGATGAAGGTACATTGCTACAGGAAACTATGAGCTTCTCTCATCTCAGGTCTCTTACTCTCTTCGGTCCTGTTAACTGGATGCCCCCTCTGTTGGACCGACATGTTTTACGAGTATTAGATCTACATGGTTGTCACCATATGATGAATGATCATATTGAGGATATTGGAAATTTATGTCAGTTGAGGTATCTGGGCCTCGGACGGACATATATCAAGATACTCCCTGTTCAAATCAGAAAGCTTGAGTTTTTGCAGACTATTGATATAAGAGACTCGATTGAACTTCCAGATGGGTTTGCTAACATGGCAGCTCTGCAGGAACTATCCTGGCTTCATGTCTGTAAAATCTCTAGAAACTTTGCACAAGATTTGGGAAATTTGAGCAATTTAAGAGTGCTGAAAATTATCTTGCATCCTCAATTTCTTTCCTATTGTCAGGAAATCTACCAAGAATCTTTGGTGTCATCCCTCTGTAAACTGGGAGAGCATAACCTTCGGTATCTGCATATTAAGCACAATGCAGGTGAAATAGATTTCTTGGTGGATTCATGGTGGCCTCCCCCACGTCTCCTCCAAAAATTTGTGATGAATGGTTTCTGTTACTTCTCTAGGTTTCCAAAGTGGATCAATTCCTCACTCTCTGAGCTCTCCTACTTGGACATTGATGTCAAGGTGATCGCAGAGGAAGAGCTAAATATGCTTGGAGGCTTGCCTTCTCTTCGTGTCCTCCGTCTATTCTTAAACAGAATTCCCGAAGAAGGATTCACAGTCAGCTCTGGTGGATTCCAATATTTATCAGAGTTTCACTTGCATAATGGTCATGGACCAGGCATAAAGTTTAAAGCAGGAGCTATGCCGAACGTTCAGGTCCTTGTATGCAGTTTCCATGCATGCGAATCAGTACGGGTATATGGTGATTTTGACTTCGGTGTCCAACACCTTTCATCTCTCGGTCGTATCAATGTCGAGATTTGTTATACAGATGAAAGAGTTGTCTTTTTGTTGGAGGCTGCAGAGTCTGCCATCAAGAATGAGATCAAGCTTCTTCCCAAGCATCCAATGTTTATGATTAGAAGGAAGTTTAATAGAAATTCCTGTATGTATTATGCATGA
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| Protein seq | MGSLAGPLNHLISRLTDLICKEYAKLKGVQKQARSLTKELISIDIALDEYTRMEEPDMQVKAWMKEVQELAYDIEDCIDIFAYRINHETSSEATSIMGLLRKNIRKVKKLHYKHKFADQIQQLKTLANEVYERRIKYRLDECTTFPMHKEVDPRLAFLYVGEDKLVGIESPTEEIISRIIEKRNRPLKQCRVVSVVGPGGLGKTTLANQVYQRIKGQFDCTAFVSVSRKPDMNHLLWGMLSEVDSTGQLPGLYNDRQLINRLRECLVNKRYLIVIDDIWSKSAWETIQCAFPKNACDEDFVYKMQHLNKRDSKSLFLKRTFGSKDKCPLQLEQIMDEILQKCDGRMDKSRNSIGSMREKDIELEVIDKIISLSYCDLPRNIKTCLLYLSIFPEDSEISRDCLIWRWIAEGFIVAKHGYSLKELGESYFNELINRSMIQPVHMDYGGTARSCRVHDIILDFIITKSTEENLVTILDGQDFSTSSSDKIRRLSIRKKKKIVDPGIVEFRFTNDNDMVNFFWDTEFDEGTLLQETMSFSHLRSLTLFGPVNWMPPLLDRHVLRVLDLHGCHHMMNDHIEDIGNLCQLRYLGLGRTYIKILPVQIRKLEFLQTIDIRDSIELPDGFANMAALQELSWLHVCKISRNFAQDLGNLSNLRVLKIILHPQFLSYCQEIYQESLVSSLCKLGEHNLRYLHIKHNAGEIDFLVDSWWPPPRLLQKFVMNGFCYFSRFPKWINSSLSELSYLDIDVKVIAEEELNMLGGLPSLRVLRLFLNRIPEEGFTVSSGGFQYLSEFHLHNGHGPGIKFKAGAMPNVQVLVCSFHACESVRVYGDFDFGVQHLSSLGRINVEICYTDERVVFLLEAAESAIKNEIKLLPKHPMFMIRRKFNRNSCMYYA |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:Q2R8L1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_Ung0004320 | OsLima_Ung0004320.01 | ChrUN-Ctg47 | 8170 | 11427 | + | NAM | ||
| CDS seq | ATGGGTTCTTTGGCAGGGCCACTTAACCATCTTATCAGCAGGCTCACCGATCTGATATGCAAGGAGTATGCCAAGCTCAAAGGTGTCCAGAAGCAGGCAAGATCGCTAACCAAGGAGTTGATCTCTATTGACATCGCACTAGACGAATATACGAGGATGGAGGAACCAGACATGCAGGTGAAGGCATGGATGAAGGAGGTGCAGGAACTAGCCTATGATATCGAGGACTGCATAGATATCTTCGCCTATCGTATCAACCATGAGACATCTAGTGAAGCCACCAGCATCATGGGTTTACTCCGCAAGAACATCCGTAAGGTGAAGAAACTtcactacaaacataagtttgctgatcaaattcagcaactgaagacccttgcaaatgaagtatatgaacggcgaatcaaatacaggcttgatgagtgcactacttttcccatgcataaggaggtggatccccgattggcgtttctttatgtgggagaagacaaacttgtgggcattgagagccccacagaagagattatcagtcggattattgagaagcgaaacagaccattgaagcaatgccgggttgtctctgttgttggacctggaggtttgggaaaaactactctcgctaatcaagtctaccagcgaataaaaggtcaatttgattgtacggcttttgtctctgtatcacgaaagcctgacatgaatcatctcctttggggaatgttatctgaagttgacagcaccgggcagttgccagggttatataatgaccggcaactcatcaatagattgagggaatgccttgtaaataaaaggtacctcattgtaattgatgatatttggagcaagtcagcatgggaaactattcaatgtgcatttcctaagaatgcttgtgatgaagattttgtctataaaatgcaacatcttaataaaagagactccaaaagtttgttcctgaaaagaacttttggttccaaggataaatgccctcttcaactggaacagattatggatgaaatattacagaagtgtgatggcagaatggacaagagccggaattcaataggttctatgcgtgagaaggacattgaactagaagtgatagacaagataatttctctcagttattgtgatctacctcgcaatataaaaacctgcttattgtacctcagtatttttccagaagatagtgaaatcagcagagattgtttgatatggagatggatagctgaaggctttattgtagcaaaacatggttatagcttgaaagaactaggggagagttacttcaatgagctcataaacaggagcatgatccagccagtgcacatggattatggtggaacggctaggtcttgtcgagttcatgatataattcttgacttcattatcaccaagtcaactgaagaaaatttagtcacgatattggacggTCAAGACTTCTCAACATCTTCAAGTGACAAGATTCGCAGGCTCTCAATACGCAAGAAGAAAAAGATAGTAGATCCAGGAATTGTTGAATTCAGATTTACTAATGACAATGACATGGTCAATTTCTTCTGGGATACTGAATTTGATGAAGGTACATTGCTACAGGAAACTATGAGCTTCTCTCATCTCAGGTCTCTTACTCTCTTCGGTCCTGTTAACTGGATGCCCCCTCTGTTGGACCGACATGTTTTACGAGTATTAGATCTACATGGTTGTCACCATATGATGAATGATCATATTGAGGATATTGGAAATTTATGTCAGTTGAGGTATCTGGGCCTCGGACGGACATATATCAAGATACTCCCTGTTCAAATCAGAAAGCTTGAGTTTTTGCAGACTATTGATATAAGAGACTCGATTGAACTTCCAGATGGGTTTGCTAACATGGCAGCTCTGCAGGAACTATCCTGGCTTCATGTCTGTAAAATCTCTAGAAACTTTGCACAAGATTTGGGAAATTTGAGCAATTTAAGAGTGCTGAAAATTATCTTGCATCCTCAATTTCTTTCCTATTGTCAGGAAATCTACCAAGAATCTTTGGTGTCATCCCTCTGTAAACTGGGAGAGCATAACCTTCGGTATCTGCATATTAAGCACAATGCAGGTGAAATAGATTTCTTGGTGGATTCATGGTGGCCTCCCCCACGTCTCCTCCAAAAATTTGTGATGAATGGTTTCTGTTACTTCTCTAGGTTTCCAAAGTGGATCAATTCCTCACTCTCTGAGCTCTCCTACTTGGACATTGATGTCAAGGTGATCGCAGAGGAAGAGCTAAATATGCTTGGAGGCTTGCCTTCTCTTCGTGTCCTCCGTCTATTCTTAAACAGAATTCCCGAAGAAGGATTCACAGTCAGCTCTGGTGGATTCCAATATTTATCAGAGTTTCACTTGCATAATGGTCATGGACCAGGCATAAAGTTTAAAGCAGGAGCTATGCCGAACGTTCAGGTCCTTGTATGCAGTTTCCATGCATGCGAATCAGTACGGGTATATGGTGATTTTGACTTCGGTGTCCAACACCTTTCATCTCTCGGTCGTATCAATGTCGAGATTTGTTATACAGATGAAAGAGTTGTCTTTTTGTTGGAGGCTGCAGAGTCTGCCATCAAGAATGAGATCAAGCTTCTTCCCAAGCATCCAATGTTTATGATTAGAAGGAAGTTTAATAGAAATTCCTGTATGTATTATGCATGA
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| Protein seq | MGSLAGPLNHLISRLTDLICKEYAKLKGVQKQARSLTKELISIDIALDEYTRMEEPDMQVKAWMKEVQELAYDIEDCIDIFAYRINHETSSEATSIMGLLRKNIRKVKKLHYKHKFADQIQQLKTLANEVYERRIKYRLDECTTFPMHKEVDPRLAFLYVGEDKLVGIESPTEEIISRIIEKRNRPLKQCRVVSVVGPGGLGKTTLANQVYQRIKGQFDCTAFVSVSRKPDMNHLLWGMLSEVDSTGQLPGLYNDRQLINRLRECLVNKRYLIVIDDIWSKSAWETIQCAFPKNACDEDFVYKMQHLNKRDSKSLFLKRTFGSKDKCPLQLEQIMDEILQKCDGRMDKSRNSIGSMREKDIELEVIDKIISLSYCDLPRNIKTCLLYLSIFPEDSEISRDCLIWRWIAEGFIVAKHGYSLKELGESYFNELINRSMIQPVHMDYGGTARSCRVHDIILDFIITKSTEENLVTILDGQDFSTSSSDKIRRLSIRKKKKIVDPGIVEFRFTNDNDMVNFFWDTEFDEGTLLQETMSFSHLRSLTLFGPVNWMPPLLDRHVLRVLDLHGCHHMMNDHIEDIGNLCQLRYLGLGRTYIKILPVQIRKLEFLQTIDIRDSIELPDGFANMAALQELSWLHVCKISRNFAQDLGNLSNLRVLKIILHPQFLSYCQEIYQESLVSSLCKLGEHNLRYLHIKHNAGEIDFLVDSWWPPPRLLQKFVMNGFCYFSRFPKWINSSLSELSYLDIDVKVIAEEELNMLGGLPSLRVLRLFLNRIPEEGFTVSSGGFQYLSEFHLHNGHGPGIKFKAGAMPNVQVLVCSFHACESVRVYGDFDFGVQHLSSLGRINVEICYTDERVVFLLEAAESAIKNEIKLLPKHPMFMIRRKFNRNSCMYYA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0238000 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g13440 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0238000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0008510 | SBH | 0.0 | 0.0 | 0.129775 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0008410 | SBH | 0.0 | 0.0 | 0.258556 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0008340 | SBH | 0.183992 | 4.697705 | 3.584064 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0008240 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0008290 | SBH | 3.603455 | 2.321407 | 7.645780 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0111000 | SBH | 2.316621 | 9.070789 | 5.2941115 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0008320 | SBH | 0.142413 | 0.463591 | 0.145122 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0117700 | SBH | 0.0470635 | 0.118865 | 0.0612595 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0008380 | RBH | 0.000000 | 0.102041 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0008470 | SBH | 0.107421 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0008430 | SBH | 1.733646 | 12.706503 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0065880 | SBH | 0.0 | 0.0 | 0.232144 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
