Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_Ung0003790 | OGI:99011810 | 1/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | ChrUN-Ctg43:92879-94114 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTACACACCATCTCGGTCGCATATGAACTGGTACACCCAAGTCTCCAAAGTTGTGTCACAAGAAGCAGCAACAAATCCTCGCACCCCCTCATTCTCCTGGCATCCCAAATAATTTCCAACAGCAACCTTATCTTTAGAACCAATGGGTAATGCATCTATCCTCTTCCACATTGTAGCATAAGGGTCAAGTTGTGGCATGGGGGGTAGAGGAGGACTGGCAAGCTGGTTCACCAAACGGTCCATTGTATTGCCAATTTTCTCGGTGGCATCTGTGAAACGACTCTTAGGTTTTGGCTGCCTTTTACTTGGGGACTTTACACCTCTTGGTCTCTTTTTACTAACTCCAGATGTTCCAGGAGAGCAATTATCAGGACCAGTAGGCGATGGTAATGTGTCTTCTTCAGCAATGTCAATAGGATATGCATAGGTAGACACATCATTCAATCCTTCATGGTCACTACTACCAGATTTTTTATCAATGTCGCAGCATGTTTGCTGGTCTATGGCAAGAGAGCTATTCGCATTACTGCCTGAGAAAAGCTCTTGCATCTCATGAAAGTACTTGATTGGCTTAGCAAGCAAACGCCTATCCCTATCCTGCATGTTGGTACAACAATATAATTTAGTAAAAAAAATGGAGCAAATATAACTCCAAACATAGCTAAATTTAAATTTGAAATAAGAATTATGATGTAATGTGATTGCTAACTTATATAGGTACAAAAGCATTGTAATGTGTGATAAATTTGTAGAGTTTTTTTTACTACATATTAGTACAGATTCATGACTAGTCAAAACTATCCATTTCTCCAGGAGCAATCAAAACTTGCTAACAACAAATCTTACAGAACTAGTGGCAATAATGAGATGACTTCAGATGAAGGATACTTCCTCTGAGCTTAGCTTTTTCAGACTCTGATATAGCCAATTTGCATTTACTAGCATCAAAACCATTGCCACTATTGTTTAAAGCCCTCTCAACTATCTGTCAGTTCTCTTTGTAGTGCCTATAGTGACGGGTTACTTGGGTAGATGTTACACCCATAGCAAACTCTCTATTTAAGACATCAGCACATTTCAGATGGTGCTGAGTTTTCCATATGAAGCCTGCATGTTGTTCTTTCTTGTACTCAATGTACCAATCAAGCATGTAGTTTAGTCATCATCCCAGCTGATGGATCTCTCACGGGTAGAACCTTCACCCTCCACCTTCCCCTTCCCCTTCCCCTTCCCCAT
More
|
||||||||||
| CDS seq | ATGGGGAAGGGGAAGGGGAAGGGGAAGGTGGAGGGTGAAGGTTCTACCCGCTTCATATGGAAAACTCAGCACCATCTGAAATGTGCTGATGTCTTAAATAGAGAGTTTGCTATGGGTGTAACATCTACCCAAGATAGGGATAGGCGTTTGCTTGCTAAGCCAATCAAGTACTTTCATGAGATGCAAGAGCTTTTCTCAGGCAGTAATGCGAATAGCTCTCTTGCCATAGACCAGCAAACATGCTGCGACATTGATAAAAAATCTGGTAGTAGTGACCATGAAGGATTGAATGATGTGTCTACCTATGCATATCCTATTGACATTGCTGAAGAAGACACATTACCATCGCCTACTGGTCCTGATAATTGCTCTCCTGGAACATCTGGAGTTAGTAAAAAGAGACCAAGAGGTGTAAAGTCCCCAAGTAAAAGGCAGCCAAAACCTAAGAGTCGTTTCACAGATGCCACCGAGAAAATTGGCAATACAATGGACCGTTTGGTGAACCAGCTTGCCAGTCCTCCTCTACCCCCCATGCCACAACTTGACCCTTATGCTACAATGTGGAAGAGGATAGATGCATTACCCATTGGTTCTAAAGATAAGGTTGCTGTTGGAAATTATTTGGGATGCCAGGAGAATGAGGGGGTGCGAGGATTTGTTGCTGCTTCTTGTGACACAACTTTGGAGACTTGGGTGTACCAGTTCATATGCGACCGAGATGGTGTGTAG
More
|
||||||||||
| Protein seq | MGKGKGKGKVEGEGSTRFIWKTQHHLKCADVLNREFAMGVTSTQDRDRRLLAKPIKYFHEMQELFSGSNANSSLAIDQQTCCDIDKKSGSSDHEGLNDVSTYAYPIDIAEEDTLPSPTGPDNCSPGTSGVSKKRPRGVKSPSKRQPKPKSRFTDATEKIGNTMDRLVNQLASPPLPPMPQLDPYATMWKRIDALPIGSKDKVAVGNYLGCQENEGVRGFVAASCDTTLETWVYQFICDRDGV |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_Ung0003790 | OsLima_Ung0003790.01 | ChrUN-Ctg43 | 92879 | 94114 | - | NAM | ||
| CDS seq | ATGGGGAAGGGGAAGGGGAAGGGGAAGGTGGAGGGTGAAGGTTCTACCCGCTTCATATGGAAAACTCAGCACCATCTGAAATGTGCTGATGTCTTAAATAGAGAGTTTGCTATGGGTGTAACATCTACCCAAGATAGGGATAGGCGTTTGCTTGCTAAGCCAATCAAGTACTTTCATGAGATGCAAGAGCTTTTCTCAGGCAGTAATGCGAATAGCTCTCTTGCCATAGACCAGCAAACATGCTGCGACATTGATAAAAAATCTGGTAGTAGTGACCATGAAGGATTGAATGATGTGTCTACCTATGCATATCCTATTGACATTGCTGAAGAAGACACATTACCATCGCCTACTGGTCCTGATAATTGCTCTCCTGGAACATCTGGAGTTAGTAAAAAGAGACCAAGAGGTGTAAAGTCCCCAAGTAAAAGGCAGCCAAAACCTAAGAGTCGTTTCACAGATGCCACCGAGAAAATTGGCAATACAATGGACCGTTTGGTGAACCAGCTTGCCAGTCCTCCTCTACCCCCCATGCCACAACTTGACCCTTATGCTACAATGTGGAAGAGGATAGATGCATTACCCATTGGTTCTAAAGATAAGGTTGCTGTTGGAAATTATTTGGGATGCCAGGAGAATGAGGGGGTGCGAGGATTTGTTGCTGCTTCTTGTGACACAACTTTGGAGACTTGGGTGTACCAGTTCATATGCGACCGAGATGGTGTGTAG
More
|
|||||||
| Protein seq | MGKGKGKGKVEGEGSTRFIWKTQHHLKCADVLNREFAMGVTSTQDRDRRLLAKPIKYFHEMQELFSGSNANSSLAIDQQTCCDIDKKSGSSDHEGLNDVSTYAYPIDIAEEDTLPSPTGPDNCSPGTSGVSKKRPRGVKSPSKRQPKPKSRFTDATEKIGNTMDRLVNQLASPPLPPMPQLDPYATMWKRIDALPIGSKDKVAVGNYLGCQENEGVRGFVAASCDTTLETWVYQFICDRDGV
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g34670 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0018560 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0018380 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0018520 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0018330 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0018710 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0318800 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0018200 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0294300 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0018620 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0018560 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0018210 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0018960 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0018420 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G018290 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0018440 | SBH | 0.0 | 0.0 | 0.0 |
