Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_Ung0003070 | OGI:99009890 | 1/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | ChrUN-Ctg40:7585-8826 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcaactctggatgtttataattttccatatttgaagaaaatggaagtaagtgctgctattgttagagtttcaaattaccaagacgaagccactaaagctggtctcaatgatatacaggccggatgggtggtaagtgaacaactaaccttaattgtctatgttaacatttggaggatgtgtagtacaatcaacatcagctatgatatatatatctcatctcaaatgctattttccctacatatatagattgatccaaccacctatggtgacagcaaaacccacttctttgtatcttggacggtatgtgtccacttatattcattgtttgtgcacttgaaatacattgcttaattaccatgcatatgtctttaattacaaggttttgatatggatgcatgacatacaggctgattattacaataaaaccggatgctttaacttggactgtgacggttttgtaccagtaaacggtgccccggtgactcctggagatacattagaacaagctaataaccaaactaaaatatcattcaagatatttaaggtaatgtaactaataattatttgatcctagactgtatttagtgtgtacatacgtatgctacacaacacatgctgatcttttttccgtaatatagtaaataaaagtacattttcatgaactgattatttccctaaactttcatatgcccgggtatgtagcttgtagatgggatctcttgagctgaaggctgaaaatttccctgttatcttaaagaaaatgtaccttgtatttatagtaggaaaatatctaagtgtacagcctttactttctcgaatagtaactcttccgaatattcttgcgcgatgatatttttccatatatgtacacaggacaaaaatgatggagattggtggctttactttggatatgacatcaacaatctcaatcgagttggattttggccaaagaatatttttaatcgtatggtagatcatgctactcgtataaggtgggctggctatgctcaatcctacaaagggagctccagtcccccaatgggcaatgggcaatttccaggaaaaatgtcagcatcctttcagaatgttatgtatgttgataccgatggccagccctatcctcctcctgtttggcctgctggtctcgaagtttatgcaagcaatacgaaatgctaccaagctagcatttttgaggataacatgttttactatgtggggccaggtagttgtactagttaa
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| CDS seq | atggcaactctggatgtttataattttccatatttgaagaaaatggaagtaagtgctgctattgttagagtttcaaattaccaagacgaagccactaaagctggtctcaatgatatacaggccggatgggtgattgatccaaccacctatggtgacagcaaaacccacttctttgtatcttggacggttttgatatggatgcatgacatacaggctgattattacaataaaaccggatgctttaacttggactgtgacggttttgtaccagtaaacggtgccccggtgactcctggagatacattagaacaagctaataaccaaactaaaatatcattcaagatatttaaggacaaaaatgatggagattggtggctttactttggatatgacatcaacaatctcaatcgagttggattttggccaaagaatatttttaatcgtatggtagatcatgctactcgtataaggtgggctggctatgctcaatcctacaaagggagctccagtcccccaatgggcaatgggcaatttccaggaaaaatgtcagcatcctttcagaatgttatgtatgttgataccgatggccagccctatcctcctcctgtttggcctgctggtctcgaagtttatgcaagcaatacgaaatgctaccaagctagcatttttgaggataacatgttttactatgtggggccaggtagttgtactagttaa
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| Protein seq | MATLDVYNFPYLKKMEVSAAIVRVSNYQDEATKAGLNDIQAGWVIDPTTYGDSKTHFFVSWTVLIWMHDIQADYYNKTGCFNLDCDGFVPVNGAPVTPGDTLEQANNQTKISFKIFKDKNDGDWWLYFGYDINNLNRVGFWPKNIFNRMVDHATRIRWAGYAQSYKGSSSPPMGNGQFPGKMSASFQNVMYVDTDGQPYPPPVWPAGLEVYASNTKCYQASIFEDNMFYYVGPGSCTS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_Ung0003070 | OsLima_Ung0003070.01 | ChrUN-Ctg40 | 7585 | 8826 | + | NAM | ||
| CDS seq | atggcaactctggatgtttataattttccatatttgaagaaaatggaagtaagtgctgctattgttagagtttcaaattaccaagacgaagccactaaagctggtctcaatgatatacaggccggatgggtgattgatccaaccacctatggtgacagcaaaacccacttctttgtatcttggacggttttgatatggatgcatgacatacaggctgattattacaataaaaccggatgctttaacttggactgtgacggttttgtaccagtaaacggtgccccggtgactcctggagatacattagaacaagctaataaccaaactaaaatatcattcaagatatttaaggacaaaaatgatggagattggtggctttactttggatatgacatcaacaatctcaatcgagttggattttggccaaagaatatttttaatcgtatggtagatcatgctactcgtataaggtgggctggctatgctcaatcctacaaagggagctccagtcccccaatgggcaatgggcaatttccaggaaaaatgtcagcatcctttcagaatgttatgtatgttgataccgatggccagccctatcctcctcctgtttggcctgctggtctcgaagtttatgcaagcaatacgaaatgctaccaagctagcatttttgaggataacatgttttactatgtggggccaggtagttgtactagttaa
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| Protein seq | MATLDVYNFPYLKKMEVSAAIVRVSNYQDEATKAGLNDIQAGWVIDPTTYGDSKTHFFVSWTVLIWMHDIQADYYNKTGCFNLDCDGFVPVNGAPVTPGDTLEQANNQTKISFKIFKDKNDGDWWLYFGYDINNLNRVGFWPKNIFNRMVDHATRIRWAGYAQSYKGSSSPPMGNGQFPGKMSASFQNVMYVDTDGQPYPPPVWPAGLEVYASNTKCYQASIFEDNMFYYVGPGSCTS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0670633 | SBH | 0.0 | 0.0 | 1.401877 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g45920 | SBH | 0.0 | 0.0 | 0.437499 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0670633 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0025910 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0025720 | SBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0025900 | SBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0025500 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0025980 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0436000 | SBH | 5.817646 | 10.987388 | 15.4615055 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0025450 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0418800 | SBH | 0.8072945 | 3.033466 | 3.1510655 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0025860 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0025860 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0025530 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0026130 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0025770 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G025610 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0025710 | SBH | 0.0 | 0.0 | 0.954274 |
