Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_Ung0003060 | OGI:99009860 | 1/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | ChrUN-Ctg40:67-5187 | ||||||||
| Gene Symbol | CYP59B, OsCYP59b, OsCYP-15, OsCYP59-2 | ||||||||||
| DNA seq | gatgaagtattacaatgggtgcctgttccacaaggtggagaaggatttcttggcacaaactggggacccaactggaacaggagctggaggcgattctgtatacaagtaaacaattgctcagatgttttactgccactgattgttgaatacatgcctgaaaagggattcatttgtttttctgtaggttcctttatggtgatcaagctcgattttttgatgatgagatccgaccagaccttaggcattcaaaaaagggaactattgctatggcgagtgctggtgaaaattgcaatgcctcgcaggtgtgataccatattcctagccttcctaccgaacttagctcagctgttttttataaccagtacttgataatccattttgaggtccttaactccttgctgctaacctgctatttctaacctttgatttatgtttctgtgactttattagttctatatcaccttgcgggatgacgtagactaccttgatgataaacacacagtgagtagtaccttattatattgactcacagaatattttctttggaaaaatccactttatctacagtgattcatatgtatgtccttatcaattataggtgttcggcatggttgctgaaggctttgacacgctgacaaagattagtgaaacatatgttgatgataaagggagaccatttaaggacatcaggtaaaataccttttttaaaaagtctaaactgaataattagaacatgcttgctaatatttacttactttctggtgttactttctgttgtttctgctttatttccaactgctgaccttctgcaaaatgttcaatggacaggattaaacatacgtatgtcttggatgatccttttgacgatcctcctcagctcagtgaacttattcctgagaattctcctgtagggaaaccacaggatgaggtaatatgagttctgctattttgctcatgttggaaagatgataaaccaaaattgtctcaccaaaatcacaggctgtcttttgtttaattcgttttacctccacattcttgaaaactatttatttgtgcacatacctttttaaagaatatggtatgaatttcagttgaggcagccactgggtgtaggtgtattttttttccttgttctgtctgtacaaattatcccgatccctaaaatatctagacaggcatgtttcagattagtcctagaagggtgtggttttgccgtgattctcctgaatgctatgtgttgtccttttaacatggtcatgatattttcttttcactgtcaatgtacagattgcagaagagcgcttagaggatagctgggtccctatggatgaaatggtggctcctgaagaacttgaggagatgatccgctccaaagaagcacatacaaatgctgtgattcttgagagcgtgagtcctgatgccaaataaaaaattaacagttcgctcattattattcatcgtgttataactgataaaaatacctttgtcttattcaggtgggagatattccagatgctgagatcaaaccaccagacaacgttttatttgtttgtaaactcaacccagtaacacaagttcgtatcggttcttaattgattggctttgttctctacttccactacctttttatgtatagattcacagatcagtttggaagtcatataggtattgaatttatagcaaatatagcttgaaatattgtttggtaactaaacggctagtgttcattgttttgtaggatgaagatttatatacaattttttctcgttttggaactgtgacatcgtaagcgcattttcctaagttcaattaatgtgcatatcttcctgtttcttattttgttaactttttttattattccttgcagagctgaaataatccgtgattacaagactggtgatagcttatgctatgcttttattggtgagtttcattcctcaaaagctggtgtacattgacatactgtgatcaagcatcggattgttgttagctagagttatgctagtccgttcatcgaacgcttgagcttcattgatagctttcccaggcattcatcctccaattctttaggcgtgttgaacatcatgttttaccctcttagatctgttatcctagtaaggaacaactgagtgacctaatttgcaacaaggttctggtgttttgtgtaaggctgagttccaaatgttagtggctatggatatactttagttgcagcatgtaaagcacaccttttagtttgttaatacttaataaaccagcaaatgggttaaatgcatgacgtggcaaaaagactaatggtgtttacttgtatctcctcaaaaataaacattaacgatttaagaaaacaaactgagtagctccattgcacacttctgaggtattaaacaatataagtttcttgatagctcaatttttctctcagggttacggtgtcagtgtgatatttggcacagactgcagtagacagtagatggcctagaaagaatttattgttccaccttgataaattggcaagatctgaatgctattataaaatgctaaattttatcttgctcttttgtagaatttgagacaaaggaggcttgtgagcgggcattcttcaaggttagttgcctaaaatcctgtttcatgtggcagataaaacttggttcttgtaattgtactttattcccttcattacttagcatttctttgctagcatatttttataagtctttttgcttgactagtgaatgttacttgattgtttgtgccttgacaattcagtattgtctatatttgtaattattttaccagtgttttcatgggagcattgcttactcaatgatatgcttgcagatggacaattgtttgattgatgatcgaagaatacatgttgactttagtcaaagtgtttcaaaactgtggggtcagttcagacaaagcaaaagaaatgcaaataaggtattcttatttccatggccttagaatatgattgcagttttcagtttcttttttatttaagctaactgcatggtagctttcttttttcttaaggaaaagcagtaggggagatcctctactgttaccctttcctacaaggaaaagaactatataaatctatccttcatcaaaattcttttcatctagactttggtggcactcaatttcctttcagaccataattatagcatcctcctgtatcctatagaaatttatttattcctataaggaatttagtgttttgtaccatgcggaagatgtctagagaagtgtactgattattattcagcacagttaaaccgtgtcaagtgtaaagatggcaacaatgttcccaataagccacaggacaaagaagaaagtaaacatcaatctgagcaagacttccaacatgttttgctttctccttagcatctctttagtatcgcatctctgtctttacatgcatttgttctctggagttcatctgtaaatggcagaagtgtgatctgaatactgtgtcttagtatattagaagtctgcagagcccctaacagaatatattattactagtctttatattaccagtttttggctaaaccacttgccgcggatggttcagattgtggcaaatagcaaactggcctagcgtcatcatttgctaggcattctgaaactcagattgttggtttctttgtatatgtaatatacgatcaatttcaaatagccctgtactcaacttagccattaattcttccagtaccaaactaacagaccatgttttatttcttacaatatgagctgagcaatggacctgaatattcatatctgcttaagatcatttctctactagagtaacttgcacaattggtgagccatggaactgaattctcataagagacctttgccatagaatattaaatcatgaaattcctattttctgtagaaaaggttgatttatgaaataattttgatacgaaacatctcatcttatatttctaggttgaccacatccaagcccattaatctataggtactaggaagtaggaaggtgtacgcagatgcccacttcattgcggaatttaacattctcaactaggactcttgaactctagttagttgtgagaccatacttttttactattttggagttagaattaattcacatgaaagctatatgatgcaattctctttgcagatggatgcttcaagtgtggcgcccctgatcacatagccaaagactgtgaccagggcactgagcagaaaaacaaaggcccaagttatgtcctgaaagatgaaaacactcagcgtggtggaaataaccgtcgaaggtcattttctttccctatctatcatatttcctgatcgtctcattttctgataatcttctgttgttttgcagctatgatcttgtctttgatgaagatggtgaaaattatactgatcagcaagatcctggaagtactggccgaagaaagattcaaagaacagatgatcgcaaatcagggctgccacctcggggtgaccatgacaggattagccgggagagaactcacagtgatgagaatggtagagaaggtggtaaagaaggtgatagggaccgagggattcgtaagcacgaggactaccaccgttacaataaatctggtgaacggagctctagtagatacgatgatcgtggctacagcaagcacgagagcagggcaaatatagggatggcaatgatgattacagacgacaaccgggaggtggcagtcgatatggcagggataagtatgaaggtgaacggcgctacagagaagatgatggccatggaaggagtgaccgtcacaagagagatgaaagtgataacaggaaaagaagcccagatactggtaagcatagaagagaagacggtggtcaccgtgagacaagcaagcacagggaaaggaggcagagagatgatagataggtcactgcatcaccgtcagttttgtcttgcctgtttctcatcatacattgaattttgtcattcttaatccaaagatagcaccagaacactaaacatgtagcttagaatctgcgtgtagacattatgagagctccactggctacagattgttgtaacttgtagaccttttcttttctatacatgctcatggacgttgttctttttgggggacg
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| CDS seq | atgaagtattacaatgggtgcctgttccacaaggtggagaaggatttcttggcacaaactggggacccaactggaacaggagctggaggcgattctgtatacaagttcctttatggtgatcaagctcgattttttgatgatgagatccgaccagaccttaggcattcaaaaaagggaactattgctatggcgagtgctggtgaaaattgcaatgcctcgcagttctatatcaccttgcgggatgacgtagactaccttgatgataaacacacagtgttcggcatggttgctgaaggctttgacacgctgacaaagattagtgaaacatatgttgatgataaagggagaccatttaaggacatcaggattaaacatacgtatgtcttggatgatccttttgacgatcctcctcagctcagtgaacttattcctgagaattctcctgtagggaaaccacaggatgagattgcagaagagcgcttagaggatagctgggtccctatggatgaaatggtggctcctgaagaacttgaggagatgatccgctccaaagaagcacatacaaatgctgtgattcttgagagcgtgggagatattccagatgctgagatcaaaccaccagacaacgttttatttgtttgtaaactcaacccagtaacacaaacaaaggaggcttgtgagcgggcattcttcaagatggacaattgtttgattgatgatcgaagaatacatgttgactttagtcaaagtgtttcaaaactgtgggatggatgcttcaagtgtggcgcccctgatcacatagccaaagactgtgaccagggcactgagcagaaaaacaaaggcccaagttatgtcctgaaagatgaaaacactcagcgtggtggaaataaccgtcgaagctatgatcttgtctttgatgaagatggtgaaaattatactgatcagcaagatcctggaagtactggccgaagaaagattcaaagaacagatgatcgcaaatcagggctgccacctcggggtgaccatgacaggattagccgggagagaactcacagtgatgagaatggtagagaaggtggtaaagaaggtgatagggaccgagggattcgtaagcacgaggactaccaccgttacaataaatctggtgaacggagctctagtagatacgatgatcgtggctacagcaagcacgagagcagggcaaatatagggatggcaatgatgattacagacgacaaccgggaggtggcagtcgatatggcagggataagtatgaaggtgaacggcgctacagagaagatgatggccatggaaggagtgaccgtcacaagagagatgaaagtgataacaggaaaagaagcccagatactggtaagcatagaagagaagacggtggtcaccgtgagacaagcaagcacagggaaaggaggcagagagatgatagataggtcactgcatcaccgtcagttttgtcttgcctgtttctcatcatacattgaattttgtcattcttaa
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| Protein seq | MKYYNGCLFHKVEKDFLAQTGDPTGTGAGGDSVYKFLYGDQARFFDDEIRPDLRHSKKGTIAMASAGENCNASQFYITLRDDVDYLDDKHTVFGMVAEGFDTLTKISETYVDDKGRPFKDIRIKHTYVLDDPFDDPPQLSELIPENSPVGKPQDEIAEERLEDSWVPMDEMVAPEELEEMIRSKEAHTNAVILESVGDIPDAEIKPPDNVLFVCKLNPVTQTKEACERAFFKMDNCLIDDRRIHVDFSQSVSKLWDGCFKCGAPDHIAKDCDQGTEQKNKGPSYVLKDENTQRGGNNRRSYDLVFDEDGENYTDQQDPGSTGRRKIQRTDDRKSGLPPRGDHDRISRERTHSDENGREGGKEGDRDRGIRKHEDYHRYNKSGERSSSRYDDRGYSKHESRANIGMAMMITDDNREVAVDMAGISMKVNGATEKMMAMEGVTVTREMKVITGKEAQILVSIEEKTVVTVRQASTGKGGREMIDRSLHHRQFCLACFSSYIEFCHS |
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| Function | Peptidyl-prolyl cis-trans isomerase CYP59 [UniProtKB/Swiss-Prot:Q6Q151] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_Ung0003060 | OsLima_Ung0003060.01 | ChrUN-Ctg40 | 67 | 5187 | + | NAM | ||
| CDS seq | atgaagtattacaatgggtgcctgttccacaaggtggagaaggatttcttggcacaaactggggacccaactggaacaggagctggaggcgattctgtatacaagttcctttatggtgatcaagctcgattttttgatgatgagatccgaccagaccttaggcattcaaaaaagggaactattgctatggcgagtgctggtgaaaattgcaatgcctcgcagttctatatcaccttgcgggatgacgtagactaccttgatgataaacacacagtgttcggcatggttgctgaaggctttgacacgctgacaaagattagtgaaacatatgttgatgataaagggagaccatttaaggacatcaggattaaacatacgtatgtcttggatgatccttttgacgatcctcctcagctcagtgaacttattcctgagaattctcctgtagggaaaccacaggatgagattgcagaagagcgcttagaggatagctgggtccctatggatgaaatggtggctcctgaagaacttgaggagatgatccgctccaaagaagcacatacaaatgctgtgattcttgagagcgtgggagatattccagatgctgagatcaaaccaccagacaacgttttatttgtttgtaaactcaacccagtaacacaaacaaaggaggcttgtgagcgggcattcttcaagatggacaattgtttgattgatgatcgaagaatacatgttgactttagtcaaagtgtttcaaaactgtgggatggatgcttcaagtgtggcgcccctgatcacatagccaaagactgtgaccagggcactgagcagaaaaacaaaggcccaagttatgtcctgaaagatgaaaacactcagcgtggtggaaataaccgtcgaagctatgatcttgtctttgatgaagatggtgaaaattatactgatcagcaagatcctggaagtactggccgaagaaagattcaaagaacagatgatcgcaaatcagggctgccacctcggggtgaccatgacaggattagccgggagagaactcacagtgatgagaatggtagagaaggtggtaaagaaggtgatagggaccgagggattcgtaagcacgaggactaccaccgttacaataaatctggtgaacggagctctagtagatacgatgatcgtggctacagcaagcacgagagcagggcaaatatagggatggcaatgatgattacagacgacaaccgggaggtggcagtcgatatggcagggataagtatgaaggtgaacggcgctacagagaagatgatggccatggaaggagtgaccgtcacaagagagatgaaagtgataacaggaaaagaagcccagatactggtaagcatagaagagaagacggtggtcaccgtgagacaagcaagcacagggaaaggaggcagagagatgatagataggtcactgcatcaccgtcagttttgtcttgcctgtttctcatcatacattgaattttgtcattcttaa
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| Protein seq | MKYYNGCLFHKVEKDFLAQTGDPTGTGAGGDSVYKFLYGDQARFFDDEIRPDLRHSKKGTIAMASAGENCNASQFYITLRDDVDYLDDKHTVFGMVAEGFDTLTKISETYVDDKGRPFKDIRIKHTYVLDDPFDDPPQLSELIPENSPVGKPQDEIAEERLEDSWVPMDEMVAPEELEEMIRSKEAHTNAVILESVGDIPDAEIKPPDNVLFVCKLNPVTQTKEACERAFFKMDNCLIDDRRIHVDFSQSVSKLWDGCFKCGAPDHIAKDCDQGTEQKNKGPSYVLKDENTQRGGNNRRSYDLVFDEDGENYTDQQDPGSTGRRKIQRTDDRKSGLPPRGDHDRISRERTHSDENGREGGKEGDRDRGIRKHEDYHRYNKSGERSSSRYDDRGYSKHESRANIGMAMMITDDNREVAVDMAGISMKVNGATEKMMAMEGVTVTREMKVITGKEAQILVSIEEKTVVTVRQASTGKGGREMIDRSLHHRQFCLACFSSYIEFCHS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0670500 | SBH | 3.817208 | 2.819255 | 12.231075 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g45910 | SBH | 2.076508 | 1.279288 | 1.799411 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0670500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0025900 | SBH | 0.858687 | 9.408198 | 5.806455 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0025710 | SBH | 0.079161 | 3.075252 | 3.156348 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0025890 | SBH | 1.285695 | 9.964793 | 8.823719 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0025490 | SBH | 0.256485 | 0.354623 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0025970 | SBH | 8.240622 | 13.306072 | 18.167582 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0436000 | SBH | 5.817646 | 10.987388 | 15.4615055 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0025440 | SBH | 0.506199 | 1.051637 | 1.675507 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0418900 | SBH | 9.464071 | 17.5895215 | 21.315361 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0025850 | RBH | 0.363022 | 0.137765 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0025850 | SBH | 0.667192 | 11.688667 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0025520 | SBH | 7.259738 | 17.915653 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0026120 | SBH | 1.276690 | 1.019261 | 1.495770 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0025760 | SBH | 0.342367 | 8.427334 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G025600 | SBH | 1.301921 | 7.932865 | 4.815029 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0025690 | SBH | 1.325193 | 4.707652 | 5.880458 |
