Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_Ung0002660 | OGI:99008760 | 1/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | ChrUN-Ctg38:122914-126166 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CAGAGGCAGTAGGCAATTTCCCACCAACAACACAACACATGACATCTTCAGAGATTATTATTCATTTCCCACCAACAACAACACATGACATCTTCAGAGATTATTATTCTGGACAGACCGTCTTGCGGCAAAAGTTAGAAGACGTCAGGATTGAAGTGCCCGGGGATGGAGTTGTTCTGCTGAGCCTGCTTCAGATGCATCGTCAGCGCATAGTTGTTTATCTGCAGCATTTTTTACCCCAGTAGATTCTTCATCAGTATGTATGTTAGGCAGAAAAAGAAAGAAACTTGCAAAAGGAGATAGGATTGTGGTTGCCACCTCTAGGGTCCTCAGTTGCTCCTGGTACTGCACAACAAGTTGCTTCAAACTCTGAACCTCCTGGCTCCTCTCGTCGAACTCCTTTTGGCGCTCATGTTGAATGGCGACCGCTCGCTTGAGGACAGCGTTCTCTCGCAGCACGACGGTCAATTGCTCCTTAAGCATCATATTTTCCTGTACAGAAAGAAAAATATGAAAGTATTCAATGTTATTGTTACTCCTAAATCATGCATTGATGCATGTTTTCTACATGCCGAATTGCTGACCAAACACTACGATGTTTTTTACACCCTAGAGAAGATAGACACACGTGTACCTTTTGCAAGTTTTGTGCTGCATCAGCTCCTGTACGCTCCACGATTGACTTCTCCAAAACTTCTAAAGCTCTTGAGGCGCGAGCACGCGCATCGCCCATGTCAGATGCATTTGTCATCTCTCTGACAAATAGCTCAACCCATTCAGAACCACTATTACCTGTCTGGCAACTATCTGCAGCAGCTGGGTGTTCATTAGCTGTACTCACACCACCATTATTAACAATACCTGCCAAGATATGCAAAATAGTTGCTGTTGTCATATATACAGTATGCTACATTTGCACAAGGGAGTGAGATGCAACCGATTCATGTGTTGTGAGAGGAAACGATAGTTTAGAATTGGCTTAGGTTTTCCTTTCTCTTTCCTTGTAATCGTTCTGTAAATATTTTATTCTTTTAATAATATAGTTTAACATTGCTGGACAAAGCCTGGCAGTATTTTGGTAGAAAAAATACAAAGAACTTGGGTAGTATATAGCCAGAAAATGCAACGCGAGAACTTGACAGCTTGGGGACACACTGAGAAGGAATACACAACTATTCTAAATATGGTGAATACAAAAGAATGGAAGATAGAAGATATGTGGATGCAGTCATCAGAATTTATGTCTAGTTAATCATGCACACTCCATATAACATAATTGACTGAATCGTGTGCAGTGTCTTTAATTGAACAGCGCATTACGTTGCAGAATATAAACATAAGACAGACATCAAAGAAACTGTTGCAGAATATAAACATAAGAACAGACATCAAAGAAACCAGCAAGGCTAGAGATCTCTGAATAATATTGATAGACAATTTGAAAGAGTATATCATGACCCACATGGATCATTATGATAGATTGGTACTGCGGTGTCTAAAATTTAAGTGTGACAAAAGCAAGAAGTACTAGTGCATGAGAATTATATGCACAGATCCTAGAAATAAAAAGCTTTTGGTTAAAAGCTGAACCTTCAACAGACGGATAAACTGCTGTGGGGAGCCCATTTTCAGATTTGCAACCAGTAGCTGATAAGATAGCCTCTGTAGACTCCAAGCGCAGATTGTTTAAACTCTTTATTGCTGAATCCAAATCATCTCCAGAAGCATCAAGAGCTCCTTCGAGCAACTAAAATGAATTTTCAGAAACCATGATCAGTTAGTTATATGGCATAGAGATAATACTGTGCACAAATACCTGGCATTACTACAAAGGATAAACATTACGCAGAACTAACAAAGGATACACGCATGAATTTGCCCATGCAACAATCATTTGATATAGTGTAGAAGAATATAAACACAGCTGTTCAGTGCTCATCAACCTTGCCTAGTCTCTGCAGGCAGGAAACCACAACTTTCTCGAATGAGAGAGTGTAGCTTTGCAAAACTCCAAGAAACATTACATGTAGAGATGTAATCTCTAAGGTGTACTCATAGTCATCGGCATAGTGGTGCCCATCATCCAGTACTGCAAATGATAAGCATGTATAAATTGTGCCATCAATTGATTTGATGATACCTATAGGTGGAACTGGTATGTTTTCCTTATCTAAAAGGATCTGAACACTAAATCCATAGGTAAAGGGTGGTAAACAAACACATACAGGAAAGCAGTAGATTCAATGCTATCAAAGAAAACACCAATGCAAAAAGCATCTCCCAAAGCCTCCAAGTTCGCTCCTTTTTCCTCCCCAGACCGCAGGGCAGCACAAGCGTCACAAGATCATCCAACCAAAACGCCACAAGAGCCCTAATTCTGATTGGCATGCCCTTCGTCCTTACACCTCCACAAAGGAAGTGAAAATGCCCACTTTCTGATGAAAAGGATCCAGCTTGCAGCAATCCATACACCAGAACAACAAGTTCGACCCCCACAAAACAACCCGTGAAGACCAAATGGGATCACAAATCTAAGCCATAAAGAACACGCATTTTTTTTCCTCATCTTAGCCCGCCCAAATTAGTCACCGGAGATCACACGCAGACCAGGAAAATTTACCCATGAATCATCGTCGCCACACCTCAACATGCACGCACCCACCTCACCTCACCTCCCCCAAACACGGGATCCCAATAACAAACTGCTCAGTTTCCGCCTCAAAAAATGATACCAGTATCCATCTACCACATCCTCCTTCAAAATTCGACAAGAGGAGAAAAGAAAAGGACGGACCTGGGGATCCATGCCCGGGAACAAGGAGGAGAGGTGGTGGAGGTGGGCCTCCCGGCGGCGGTGAGGGGAGCGGCGGGACCTCTTGGCCGGATGGTGGTGGGAGTGAGGGGAGGGAGGGGACGGCGGGAGGAGGTCGTCGGCGAAGATGGCGGAGGACCTCTTGCCACAGACTACCGCAGACATGGTGCCCCTCGCCTCCTCCTCCTCCTCGTCCTCCTCGCGCTGCCGCTCGCCGCCGACGCCGTCCTACTCCCCGCCTCCGCCGCCCATCCCCTTCCTTCCCCCGCCGCCGCGTCCCCTCCTCTCGATGGGATTGGGTTGGGTTGGTGGGTGGGTTTGGGCTCGAGGCGGAGGCGGATCGCGGAGGCGGAGGCGGAGGCGGAGCTCGCGATGGTTTAACGACGGTAACTTGGACCGATCGCGCTGTCCCCCATTGATTACGTCGGCTTTTTTCCTTTT
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| CDS seq | ATGTCTGCGGTAGTCTGTGGCAAGAGGTCCTCCGCCATCTTCGCCGACGACCTCCTCCCGCCGTCCCCTCCCTCCCCTCACTCCCACCACCATCCGGCCAAGAGGTCCCGCCGCTCCCCTCACCGCCGCCGGGAGGCCCACCTCCACCACCTCTCCTCCTTGTTCCCGGGCATGGATCCCCAGTTGCTCGAAGGAGCTCTTGATGCTTCTGGAGATGATTTGGATTCAGCAATAAAGAGTTTAAACAATCTGCGCTTGGAGTCTACAGAGGCTATCTTATCAGCTACTGGTTGCAAATCTGAAAATGGGCTCCCCACAGCAGTTTATCCGTCTGTTGAAGGTATTGTTAATAATGGTGGTGTGAGTACAGCTAATGAACACCCAGCTGCTGCAGATAGTTGCCAGACAGGTAATAGTGGTTCTGAATGGGTTGAGCTATTTGTCAGAGAGATGACAAATGCATCTGACATGGGCGATGCGCGTGCTCGCGCCTCAAGAGCTTTAGAAGTTTTGGAGAAGTCAATCGTGGAGCGTACAGGAGCTGATGCAGCACAAAACTTGCAAAAGGAAAATATGATGCTTAAGGAGCAATTGACCGTCGTGCTGCGAGAGAACGCTGTCCTCAAGCGAGCGGTCGCCATTCAACATGAGCGCCAAAAGGAGTTCGACGAGAGGAGCCAGGAGGTTCAGAGTTTGAAGCAACTTGTTGTGCAGTACCAGGAGCAACTGAGGACCCTAGAGATAAACAACTATGCGCTGACGATGCATCTGAAGCAGGCTCAGCAGAACAACTCCATCCCCGGGCACTTCAATCCTGACGTCTTCTAA
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| Protein seq | MSAVVCGKRSSAIFADDLLPPSPPSPHSHHHPAKRSRRSPHRRREAHLHHLSSLFPGMDPQLLEGALDASGDDLDSAIKSLNNLRLESTEAILSATGCKSENGLPTAVYPSVEGIVNNGGVSTANEHPAAADSCQTGNSGSEWVELFVREMTNASDMGDARARASRALEVLEKSIVERTGADAAQNLQKENMMLKEQLTVVLRENAVLKRAVAIQHERQKEFDERSQEVQSLKQLVVQYQEQLRTLEINNYALTMHLKQAQQNNSIPGHFNPDVF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_Ung0002660 | OsLima_Ung0002660.01 | ChrUN-Ctg38 | 122914 | 126166 | - | NAM | ||
| CDS seq | ATGTCTGCGGTAGTCTGTGGCAAGAGGTCCTCCGCCATCTTCGCCGACGACCTCCTCCCGCCGTCCCCTCCCTCCCCTCACTCCCACCACCATCCGGCCAAGAGGTCCCGCCGCTCCCCTCACCGCCGCCGGGAGGCCCACCTCCACCACCTCTCCTCCTTGTTCCCGGGCATGGATCCCCAGTTGCTCGAAGGAGCTCTTGATGCTTCTGGAGATGATTTGGATTCAGCAATAAAGAGTTTAAACAATCTGCGCTTGGAGTCTACAGAGGCTATCTTATCAGCTACTGGTTGCAAATCTGAAAATGGGCTCCCCACAGCAGTTTATCCGTCTGTTGAAGGTATTGTTAATAATGGTGGTGTGAGTACAGCTAATGAACACCCAGCTGCTGCAGATAGTTGCCAGACAGGTAATAGTGGTTCTGAATGGGTTGAGCTATTTGTCAGAGAGATGACAAATGCATCTGACATGGGCGATGCGCGTGCTCGCGCCTCAAGAGCTTTAGAAGTTTTGGAGAAGTCAATCGTGGAGCGTACAGGAGCTGATGCAGCACAAAACTTGCAAAAGGAAAATATGATGCTTAAGGAGCAATTGACCGTCGTGCTGCGAGAGAACGCTGTCCTCAAGCGAGCGGTCGCCATTCAACATGAGCGCCAAAAGGAGTTCGACGAGAGGAGCCAGGAGGTTCAGAGTTTGAAGCAACTTGTTGTGCAGTACCAGGAGCAACTGAGGACCCTAGAGATAAACAACTATGCGCTGACGATGCATCTGAAGCAGGCTCAGCAGAACAACTCCATCCCCGGGCACTTCAATCCTGACGTCTTCTAA
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| Protein seq | MSAVVCGKRSSAIFADDLLPPSPPSPHSHHHPAKRSRRSPHRRREAHLHHLSSLFPGMDPQLLEGALDASGDDLDSAIKSLNNLRLESTEAILSATGCKSENGLPTAVYPSVEGIVNNGGVSTANEHPAAADSCQTGNSGSEWVELFVREMTNASDMGDARARASRALEVLEKSIVERTGADAAQNLQKENMMLKEQLTVVLRENAVLKRAVAIQHERQKEFDERSQEVQSLKQLVVQYQEQLRTLEINNYALTMHLKQAQQNNSIPGHFNPDVF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.098150 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0642900 | SBH | 1.578400 | 0.858688 | 12.679604 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g43550 | SBH | 0.923223 | 0.565742 | 2.762416 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0642900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0023970 | SBH | 1.761607 | 31.879118 | 13.358225 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0023780 | SBH | 0.455092 | 6.294416 | 5.757257 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0023960 | SBH | 2.936509 | 24.604530 | 19.565390 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0023520 | SBH | 0.056559 | 1.421901 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0023980 | SBH | 3.678418 | 33.666050 | 29.707994 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0410000 | SBH | 13.05559 | 58.9442005 | 59.515743 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0023470 | SBH | 0.127478 | 2.394577 | 2.585682 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0391500 | SBH | 17.0114905 | 37.099781 | 45.651865 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0023910 | RBH | 0.000000 | 0.098150 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0023850 | SBH | 0.480789 | 28.815180 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0023530 | SBH | 1.660135 | 24.208616 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0024180 | SBH | 0.121107 | 3.198826 | 2.542280 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0023770 | SBH | 0.465455 | 18.590784 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G023580 | SBH | 0.258208 | 19.246138 | 5.862785 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0023790 | SBH | 1.268195 | 22.658796 | 20.954987 |
