Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_Ung0002150 | OGI:08007620 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | ChrUN-Ctg36:115921-118857 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aacaactaaaaatcattttacttgaacaacttgcccaaatagagtcatcaaaaggagaaataacaacttgcccaagaataagaaaatctgatccaccttaagatgaccaccctagtcatcaaaatccacatcacttacaaaacagatttaggatcataaccatcaacaacttcaataacgtaactggtggcctaggttgtaaaagaaaacattgaaatatgagtcatggaattccaattcaaaagacttgagtgtgcaaatgctgaaattaagatgctcaacattctcagccattttggggatggattttgatttgagggagaggattaataatggaaaataagatcttcacaatgatgtggactcttctatcgccttgtgggcaaatgattttgattttcctaagcttttcacagttaactgctgtccctgttccttcgcatgtgggatctaaatctgcagtagcatttgcagaattggtgtcgtgatcataggcataagctccatgctggtaaaatgaacaaggaaacagttaaactcaattcatgagaagaaaagaaacagcaatgtggagagggggagatataccgaaccttgacaagatgcagggaaagtttctctatgttaggtgagtgccgaagcaagtacagtagtggatagcagccatcactaaaaaaccactcaccaagtgccaaactcgttagattgctgaatatcccacaccttggaagatcacgtagtaataccttttggaccacctgcccacaagttttaaactccaaagatgttaaagataggaatatataaacaacaaataagagcaattgtaatttaaagcatttagcttacatcttcgtagatagatgaagacatcaagtgcaatcttgcagcgtttgaaagagcactgagaatagtgcagtcaacatcagaatgtccaaaagagaacctattaaggtaaactgaagccgattccactgatgatatgtctaggagccgaagatttctgtttgcaatctcctctacatgcaggcagataaggtttggcatatttatcacaagatgctgaaaaccttctgggtcatcttgagttctatctgcagctgtaatggtcagaatcttcaatgtagcagagcaaaacatggtggccttgatggcacaatgtctcaactccagatgcagtagctccgggcaaccagaaaagagcttctcgacaaaacggttatcaatagaaaatttgcaaaggtatacactcttcaagtgcaaggaagtgaaggggacaggatatccatctacagaaaggagcttgccatcacaataattgagtatgccgagagttttaacgttgcacctaagggcatggcggacccatggatggatgtcagaataatcaagggaatcatcaaagctgtcataggaggtatggatacagaacatatccaacagggcacagctgcgctgcaggagcaaattgtcaacaaacttcttaaaatgtttcactgtaatgaagttgcacgagtcaacattgaggtatcccacagatgcccagacgttctgccacctccgagatagcacacaagtctgcacagcctccttcgctgttaggaatgtcatgacatggtgcaaaagttcgtcaggtagagcactgatcctgtcacagacactcgttcgcctgctagactgggacatatctctctctctctctggaagagcttactttatcaggggcattcaatcgagtagttggtgtgcgagggtgccaactgccatatccacagaatggagaaatagatccacacaagcaaaattggatacagcacgttagtaatttgcaatcAaaaatttgttcttgtaagcaggaaacaaaataagattgaagtgcgaggaaaagaaacaaattttgtggggcatttctcttctacccgaaaaagaaaacctcaaaaacgcaatcatgttccgccctgttggtaggactggatatagaaactagatattgctaatcacagtacagagaacgctagtaaccacagctgcggcaatggctaaataaatcttttccattttggagagaagagaccctggcatcctattacaggaagtgtactacagcagtgaagcatccttttctccaatgcaaaaagcgacacatccacataagacttactagtacttggcactcgaacaaggaataaaatgtactcttaaacaacttgggtggcatttcctttttaccctctattaatggaaatggaggggcttccctcttcttctttaattttaaccccaagatatgaaaaccatcgcacacaattttgttccggcctgttggcaggactggaaataggaaccagatatcaccaattcacaccacaaacaacatctgcagctattgctaaaaaaaaaatgtgcattactttgaagctgaatggctaaaactaaagatctcattatttggctcaagtgctaatcgacactacggctacggtcaacagaaacatggcataggggggttcattttattcatccaaatcaaacacaacattgaaataacacccaagcccccaaatggaggcggggaaaaaccctagctggcgaatggcggatggaagaacacagtaattgcctcaggaagtcagcaagacgaaacgcctcacccaagggaaccggcggcgggctgtggcctttatcgcgctggcctccgttcttcaccggcgtgcggcagccgtcggagggagaggcctcctgccaaagaggaaagagggggacgatgtgacaccaccagctatccaaccagcaacactgcacgctccggcgccgcttccgcctacctccgcgccgcgcaccggcgtgcgacggccggcgaggagcccaaacctgcacacgacggcgcggccacaggcagcgctgcagcgtttccacaaaagatggccctcgttatgg
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| CDS seq | atgtcccagtctagcaggcgaacgagtgtctgtgacaggatcagtgctctacctgacgaacttttgcaccatgtcatgacattcctaacagcgaaggaggctgtgcagacttgtgtgctatctcggaggtggcagaacgtctgggcatctgtgggatacctcaatgttgactcgtgcaacttcattacagtgaaacattttaagaagtttgttgacaatttgctcctgcagcgcagctgtgccctgttggatatgttctgtatccatacctcctatgacagctttgatgattcccttgattattctgacatccatccatgggtccgccatgcccttaggtgcaacgttaaaactctcggcatactcaattattgtgatggcaagctcctttctgtagatggatatcctgtccccttcacttccttgcacttgaagagtgtatacctttgcaaattttctattgataaccgttttgtcgagaagctcttttctggttgcccggagctactgcatctggagttgagacattgtgccatcaaggccaccatgttttgctctgctacattgaagattctgaccattacagctgcagatagaactcaagatgacccagaaggttttcagcatcttgtgataaatatgccaaaccttatctgcctgcatgtagaggagattgcaaacagaaatcttcggctcctagacatatcatcagtggaatcggcttcagtttaccttaataggttctcttttggacattctgatgttgactgcactattctcagtgctctttcaaacgctgcaagattgcacttgatgtcttcatctatctacgaagatgtggtccaaaaggtattactacgtgatcttccaaggtgtgggatattcagcaatctaacgagtttggcacttggtgagtggttttttagtgatggctgctatccactactgtacttgcttcggcactcacctaacatagagaaactttccctgcatcttgtcaagcatggagcttatgcctatgatcacgacaccaattctgcaaatgctactgcagatttagatcccacatgcgaaggaacagggacagcagttaactgtgaaaagcttaggaaaatcaaaatcatttgcccacaaggcgatagaagagtccacatcattgtgaagatcttattttccattattaatcctctccctcaaatcaaaatccatccccaaaatggctga
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| Protein seq | MSQSSRRTSVCDRISALPDELLHHVMTFLTAKEAVQTCVLSRRWQNVWASVGYLNVDSCNFITVKHFKKFVDNLLLQRSCALLDMFCIHTSYDSFDDSLDYSDIHPWVRHALRCNVKTLGILNYCDGKLLSVDGYPVPFTSLHLKSVYLCKFSIDNRFVEKLFSGCPELLHLELRHCAIKATMFCSATLKILTITAADRTQDDPEGFQHLVINMPNLICLHVEEIANRNLRLLDISSVESASVYLNRFSFGHSDVDCTILSALSNAARLHLMSSSIYEDVVQKVLLRDLPRCGIFSNLTSLALGEWFFSDGCYPLLYLLRHSPNIEKLSLHLVKHGAYAYDHDTNSANATADLDPTCEGTGTAVNCEKLRKIKIICPQGDRRVHIIVKILFSIINPLPQIKIHPQNG |
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| Function | F-box/LRR-repeat protein At4g14096 [UniProtKB/Swiss-Prot:Q94B46] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_Ung0002150 | OsLima_Ung0002150.01 | ChrUN-Ctg36 | 115921 | 118857 | - | NAM | ||
| CDS seq | atgtcccagtctagcaggcgaacgagtgtctgtgacaggatcagtgctctacctgacgaacttttgcaccatgtcatgacattcctaacagcgaaggaggctgtgcagacttgtgtgctatctcggaggtggcagaacgtctgggcatctgtgggatacctcaatgttgactcgtgcaacttcattacagtgaaacattttaagaagtttgttgacaatttgctcctgcagcgcagctgtgccctgttggatatgttctgtatccatacctcctatgacagctttgatgattcccttgattattctgacatccatccatgggtccgccatgcccttaggtgcaacgttaaaactctcggcatactcaattattgtgatggcaagctcctttctgtagatggatatcctgtccccttcacttccttgcacttgaagagtgtatacctttgcaaattttctattgataaccgttttgtcgagaagctcttttctggttgcccggagctactgcatctggagttgagacattgtgccatcaaggccaccatgttttgctctgctacattgaagattctgaccattacagctgcagatagaactcaagatgacccagaaggttttcagcatcttgtgataaatatgccaaaccttatctgcctgcatgtagaggagattgcaaacagaaatcttcggctcctagacatatcatcagtggaatcggcttcagtttaccttaataggttctcttttggacattctgatgttgactgcactattctcagtgctctttcaaacgctgcaagattgcacttgatgtcttcatctatctacgaagatgtggtccaaaaggtattactacgtgatcttccaaggtgtgggatattcagcaatctaacgagtttggcacttggtgagtggttttttagtgatggctgctatccactactgtacttgcttcggcactcacctaacatagagaaactttccctgcatcttgtcaagcatggagcttatgcctatgatcacgacaccaattctgcaaatgctactgcagatttagatcccacatgcgaaggaacagggacagcagttaactgtgaaaagcttaggaaaatcaaaatcatttgcccacaaggcgatagaagagtccacatcattgtgaagatcttattttccattattaatcctctccctcaaatcaaaatccatccccaaaatggctga
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| Protein seq | MSQSSRRTSVCDRISALPDELLHHVMTFLTAKEAVQTCVLSRRWQNVWASVGYLNVDSCNFITVKHFKKFVDNLLLQRSCALLDMFCIHTSYDSFDDSLDYSDIHPWVRHALRCNVKTLGILNYCDGKLLSVDGYPVPFTSLHLKSVYLCKFSIDNRFVEKLFSGCPELLHLELRHCAIKATMFCSATLKILTITAADRTQDDPEGFQHLVINMPNLICLHVEEIANRNLRLLDISSVESASVYLNRFSFGHSDVDCTILSALSNAARLHLMSSSIYEDVVQKVLLRDLPRCGIFSNLTSLALGEWFFSDGCYPLLYLLRHSPNIEKLSLHLVKHGAYAYDHDTNSANATADLDPTCEGTGTAVNCEKLRKIKIICPQGDRRVHIIVKILFSIINPLPQIKIHPQNG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0150200 | SBH | 0.176724 | 0.271851 | 0.092556 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g05470 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0150200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0003350 | SBH | 0.000000 | 1.441040 | 1.042782 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0003400 | SBH | 0.0 | 0.0 | 0.636684 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0003370 | SBH | 0.446366 | 1.606379 | 1.044488 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0003350 | SBH | 0.076068 | 0.274072 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0003180 | SBH | 1.133685 | 1.101583 | 5.084068 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0043900 | SBH | 0.494926 | 0.443432 | 3.737089 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0003040 | SBH | 0.000000 | 0.256636 | 0.262270 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0050000 | SBH | 1.824796 | 2.0637945 | 13.737121 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0003050 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0003100 | SBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0002930 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0003190 | SBH | 0.131531 | 0.172928 | 0.416895 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0003110 | SBH | 0.118999 | 0.502236 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G003050 | SBH | 0.198101 | 0.595333 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0002930 | SBH | 0.000000 | 1.820668 | 1.688068 |
