Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_Ung0001680 | OGI:99006030 | 1/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | ChrUN-Ctg33:370968-376810 | ||||||||
| Gene Symbol | D35, d35, d35(t), dwf30, OsKOL2, KOL2, KO2, OsKO2, OSKO2, KO, CYP701A, CYP701A6, Os KO2, OsKOL2/CYP701A, OsKOS3 | ||||||||||
| DNA seq | TCACATCCTTCCTCTGGGCGTGAGGTGGACATGAAGCGGGTGGAGCTTGTAGGCGGTGAACTGCACGGTGTCCACCTTCTCCTCGTCGCCCTCCGTCAGCCTCCACCCGAACTCCTGCACGAAGCGCGCGATGGCGGTGCACGCGATGTGCATCACCTGTAGGCTCCCTGCGCAGGCCCTCCTCCCGGCGCCGAACGCCATCGTCTTGTACATGTCTGCCACCTCCAACCTCCCGCCGGTGAACCTCTCTGGCACCCACTCCTCCGGCGACTCCCACTCCTTCTTGTTCATGTTGCACCCGTACAGGTTGATCACCATCTGCTAGCAAATGACCATCACTTGTTAGATTGTCAGGGTGATTGAAATTTTGGACTCCCCCAGAAAGCAATTATGGCCGCATTGTTTCACGTATTCGTGGAATAATAATACGTGAAATAATCCAAACAGCATATTTACAAACGAAAAGTAATTTATAAATAAAACTTTTATATACGTGTTCTTAGCGATCTAAAAGCAAAGGCTGAAAAATAAACTTCTGTAAAAAAAGAACTCTCAAAATCAGCTTTAAATTTAAAGTTAAAAATTTAAATTTTGGTTGATAAGTATAAGCATAAGCGAAAAAGATGAGGCCCACCTGAAAACTCTACGAGAAGTCAAGGACGACGAGTTTGCCCAATATGATAAAAGTTATTGGATTTCAACAGGCAGGTTTGAAACAAAGGATACAAGATAAGTAGAGCTTAGTCTTCTATTTTTTTTCTTAGCTTTCTTGTTTTCTTACGGTCTAGTGTGAATATAAAGGTCGGATTTTAATCCATTCTCTTGAAAAAAAAACCAACATTTTCAGAATTTTCCAAAGTTTTGTGAATTTGGTTAAAATTTTATTCAAATTCAGTTAAAATTTCAAATAATTTCGTGCAAAAATAAGTTCCAAAAACACCGAAGTTCGTGAAATTTCGGTGACACCGAAATCACTGAAATTTTGGCGACACCGAAATAACTGAAACTTCGGCCCAAACTGAAAGTGTAAACCCTGCCATTGTCGTATGGTTGTGCTTACCTCGGTGCCGGCGGGGACGTCGTAGCCTGCAAGCTTGGTGTCCTCGTGGACGAACCTCGGGGGTATGAGCGGGACAGGGGAGTGGCGGCGCAGCGTCTCGTGGAAGACGGCGTTGAGGTACGGCAGCCGCGGCAGGTGCTCCTCGGTGACCGTCTCGTCGCCGCACACCTCCCGGATTTCTTGGTAAAGCCGTTCCTGGCATGACCAGAAAAACGCCCAAAAGAAAACGTTTGGGTTGATAATGCCAAGAATGAGCTGGAACAGAGTAACAAATATTTCTTGCCTGTTTGTCAGGGTTCTTGGCAAGCTCGTACATGGCCCATTCTGTGGCGACCAAGGTAGTATCTGCAGCCTCTATGAGTTCCTCCCACACCAGCATCGTCAGTTGCTCATCTGTCAGTGTGTTCTCTGCCAGCAAGAAGTCCAGATAGCATATCTTTGCCTGCATATTTATCTCAGTTTCATGGAGCCAAAAAGAGATGATATGTGGACATAATACTTGTTTCTAAATAACGTCGTTGACTTTTTTAAATATGTTTGATTAATTGTCCGTCTTATTCAAAAAATTTAAGGAATTATTAATTATTTTCCTATCATTTGATTCATTGTTAAATACATTTTTATGTGAGTAAATTGCACTAGCGGTCCTTAAACTTGTAACGAGATTTCACTTAGATCCACAAACTTATAAAACGCGCATCGAGATCCCTAAACTTGATTTAATGTATCATCCCGATCCAAAGTCTTGTTTAACAGTGGTCTTGTCTACGTGGCGTAGCACGTGGACGATGACATGGAATTTTTTATTTTTTCCTCCCTTCTTCTTCCACTCTCATCCCTTCCCCCACCTTCTTTTCCCCACTGACGCCAACAAATGGCCAGACGCCACCGAGGCGCCGATGCCTCCCCTCCCACTCCGCCCACCGCCGGCGGCAGCGTCACCTCTCCCATCCCCGGCGGCCTCGCTTCTCCTCTCTCTATGTGTGTGTGTGTGTGGGCGCGCGCGCGCGGATCGGACCGCCTCTCCCCTCTCCTCACGACGGTCGGGGAACCGCGGCGGCGACGATGACAGCGAGGTCGCCAGATCTAGCCACAATCTTGTTGGATCCGGTCGTGACCTCGGCAGGCAAGTCGATCAGTGTTGGGCAAAGAGCTCTGTGCGGTGGAAGGCGATGAGCTCCGCACAGCGTAGGTCGACGTGATGGGCAGCGGCAAGCTCTGTATGACAGAGGATGACGAGATTGGCAGCGACGAGCTCTGCACGGGAGAATGCACGATCTCGTTGGGGAGCAACCACGCCACTAGTTATCACTATCGCCGCCCGGAGTTGTCATCGTCCCCCCAGCCTCCGCTCCGCCATCGACCACGCGCTTTGCCTCCGATGGTCAACATCATCTCTCTCGTTGCCTCCCTCTCTCCCTTTGCATGCCACCGATACATATAGAGGTGGAGGAAAGAGAGAAAAAAAGGAAAAAGAAATTTGTGCCATGTCATCGTCCATGTGGCATGCCACGTAAGGTAAGACCACGGTCAAACGAGACTTTGGACTAGGATGATACATTAAATCAAGTTTAAAGATCTCGATGCGTGTTTTACAAGTTCGTGGATCTAAGTGAAACCTAGTTACAAGTTTTAAGGACTGCTAGTACAATTTACTCTTTTTATGTAGATATATAGTTTTACAAATTTGACTAAAGTTTTTGAATAAGATGAACGGTCAAACATATATTAAAAAGTCAACGGTGTCAAATATTTAGAAATAGAGGGGGTAACTTTTTTTTTTGGCATAGAAACAGAAGTTGTCATTTGTCAAAGTATGCATTTCGTCACCTCTCCACGCACAATCCTTTCCTTCTGTTGCTTGATCAAGGCGCGCATCACCGCGGTTCGTCTAGCTTCTGCGGTAAACACTCTTGTTTCGAAGCTCTTGTTTGGAACCCAGCTGAGGTAGGAGAAGAAGTCTCTCCAATCAACCTCAATTGCGCACATCATCATGTCGGTCACAGTGGCGTTGTAGATTTCTTCCTTCGAAATGTCCCTCCCAAATTCATCCACGTAGACTGAACTCACATCCTCTCCTAAGCTCTGAAGTTTGCGACATTCATTGTCAGTGCCGGAAATAACAAATCGACCATCTGACAGTTCAAGTTCAGAGAGACAATCCAAACCTGGATCATGGACAACCGgaatagctcatccttgaaaacatctctaaatatcagaggaacatgtgggtcatctttcaccagtttatggaaagtgcttaacatgttattgatcatcatatctcttgtgtcacgaaattttttctgaaatttatggaagcattgcattgtcagaccacagataactgaaactctgtaagtataattggtagcagatgataagtactgaaaatgcacactggagttattgagaataatcagtagtaaaaatcaaaaatgaaattgttgagaagtatacctgtgcagaagtacccagcgtgcttgacatgacataacgcttcaccattttgtggaaatcaccatagtcgctggtagcaaccatggatttatcacgagtaagcactgtcagtgctttggatagctttcgggtagatatgatgagaatttgcaaccatcgcctgcaaaagatagtacagtattggtttgtgttatttatgatcaaatcaaatgtgagactatcattctagagttagcaatcaattgaaatgatagacaacttctaagtcacctccttggctacttcagttgaattgagcacaactagcaactacgagaagccccaatccttatggtgtagattgggccataaatttcagcccatttgtgaaggtctgatgaggcttcttttctttcaattgatgcagatttccgattatgggtaaaccaggaacagctgcatgacaataaaataaaatcatagaatcatgggagactaacttgtacactagactgaaaacttgaaatgggttatttgataatttgtttgcatagatgataacaccatatattcatgcaagtaattactagcctagtgatgaattagtgttgtccctttctttggtgatgttgtaagatattgacaagatgatggtcgataagctcagaatatcaaatagaattaggtgattatagaccagaataattaatacattgcatataaatataacacacacacatatctgcgagacttttcaaaacaaaaaactgccgactcaggactacatcgtttcgcttagtgatggaataagcgaaacagtatatttgtaaatagaaaataatttattaataaaatttttatagacgtattcttagacaggccgattcggctcggttaattccatattgtccatgttccacgaacaaatgatgtaccatatgtctccagtgaaacgggagttttgtctacttatactaaaagaaggtaacaatcgacaaatttagggattctcatttcagttttatttgcaaagtaataaagctagttatgtgaattattggctgttaacggaaaacagatgtatgttattccatcatcatgggcaataattgcatgctaacctagcatgatatctttataaacgaaagaataaatttgacactttttatggattgatgaaggttttctaagtttgttaaaattattccatactacaaaaggctagtctctacccctccgtcacattaaaaaacctaatcctacgaactaacctggacacatataacaatataatatatgtgtacaaattcatagttagggttgTttttttatagagtagtaactccatccatttctaaatatttgacgccgttgacttttttaaatatgtttaacccttcgttttatttataaaatttaagtaattattaattattttcctatcattagattccttgttaaatatacttatatatacatAtagttttacatatttcacaaaagtttttaaataagacgaacggtcaaacatttgctaaaaaatcaacggtgtcaaatatttagaaatggagggagtatgtgatatcatttaattatgtacttactcagaatgtttcactgtaggatagtttcctaattttcaaatccacactacgttagtcagaagaactaatgtgctagaaaaaaaaatcaagagaacaataattaccaactaactgttatatccaagtggtccgatgaggatagctttggAaaaagctactgcaattgatgaatcactttctactgttgcaactgaaaaatcacgctcccagccagaagtaaacggaagtctacagtaagtcactgggagatgagcaaccaccgtgtgcatgaaaactaacattaaggaataaagtataggaataattaattatttaccactctcacggagggtgataaatgatttgtcactaaatccacatgtcatagacacatgaggacacatgagggcccatatgtcattagacagcgagtgacaaatAAttaattaacacatcttaaaagtggcgaaaaaattaaatgtccctaaagtttagtaccttaagcttaaggcttgagagagagatattaagccccggctgacctgggggcgcgttggggcgtttccttggcgcgatcacgccggccctctcggcgagcgcgaccgcggcaacgaaccctccGaccaccgccgcggcgacgaacactccgaccaccgccgccgccccgaccccgcccgcgccgcccgacacgaacgcctccatggatcacccacacgcacgcgcggctcgtcgccgtcgcccgcttcagttgatcgtgg
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| CDS seq | atggttgctaccagcgactatggtgatttccacaaaatggtgaagcgttatgtcatgtcaagcacgctgggtacttctgcacagaaaaaatttcgtgacacaagagatatgatgatcaataacatgttaagcactttccataaactggtgaaagatgacccacatgttcctctgatatttagagatgttttcaaggatgagctattcCGGTTGTCCATGATCCAGAGCTTAGGAGAGGATGTGAGTTCAGTCTACGTGGATGAATTTGGGAGGGACATTTCGAAGGAAGAAATCTACAACGCCACTGTGACCGACATGATGATGTGCGCAATTGAGGTTGATTGGAGAGACTTCTTCTCCTACCTCAGCTGGGTTCCAAACAAGAGCTTCGAAACAAGAGTGTTTACCGCAGAAGCTAGACGAACCGCGATACTACCTTGGTCGCCACAGAATGGGCCATGTACGAGCTTGCCAAGAACCCTGACAAACAGGCAAGAAATATTTGTTACTCTGTTCCAGCTCATTCTTGGCATTATCAACCCAAACGTTTTCTTTTGGGCGTTTTTCTGGTCATGCCAGGAACGGCTTTACCAAGAAATCCGGGAGGTGTGCGGCGACGAGACGGTCACCGAGGAGCACCTGCCGCGGCTGCCGTACCTCAACGCCGTCTTCCACGAGACGCTGCGCCGCCACTCCCCTGTCCCGCTCATACCCCCGAGGTTCATGGTGATCAACCTGTACGGGTGCAACATGAACAAGAAGGAGTGGGAGTCGCCGGAGGAGTGGGTGCCAGAGAGGTTCACCGGCGGGAGGTTGGAGGTGGCAGACATGTACAAGACGATGGCGTTCGGCGCCGGGAGGAGGGCCTGCGCAGGGAGCCTACAGGTGATGCACATCGCGTGCACCGCCATCGCGCGCTTCGTGCAGGAGTTCGGGTGGAGGCTGACGGAGGGCGACGAGGAGAAGGTGGACACCGTGCAGTTCACCGCCTACAAGCTCCACCCGCTTCATGTCCACCTCACGCCCAGAGGAAGGATGTGA
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| Protein seq | MVATSDYGDFHKMVKRYVMSSTLGTSAQKKFRDTRDMMINNMLSTFHKLVKDDPHVPLIFRDVFKDELFRLSMIQSLGEDVSSVYVDEFGRDISKEEIYNATVTDMMMCAIEVDWRDFFSYLSWVPNKSFETRVFTAEARRTAILPWSPQNGPCTSLPRTLTNRQEIFVTLFQLILGIINPNVFFWAFFWSCQERLYQEIREVCGDETVTEEHLPRLPYLNAVFHETLRRHSPVPLIPPRFMVINLYGCNMNKKEWESPEEWVPERFTGGRLEVADMYKTMAFGAGRRACAGSLQVMHIACTAIARFVQEFGWRLTEGDEEKVDTVQFTAYKLHPLHVHLTPRGRM |
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| Function | Ent-kaurene oxidase 2 [UniProtKB/Swiss-Prot:Q5Z5R4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_Ung0001680 | OsLima_Ung0001680.02 | ChrUN-Ctg33 | 374261 | 376754 | - | NAM | ||
| CDS seq | atggaggcgttcgtgtcgggcggcgcgggcggggtcggggcggcggcggtggtcggagtgttcgtcgccgcggcggtggtCggagggttcgttgccgcggtcgcgctcgccgagagggccggcgtgatcgcgccaaggaaacgccccaacgcgcccccagttgtgctcaattcaactgaagtagccaaggaggcgatggttgcaaattctcatcatatctacccgaaagctatccaaagcactgacagtgcttactcgtga
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| Protein seq | MEAFVSGGAGGVGAAAVVGVFVAAAVVGGFVAAVALAERAGVIAPRKRPNAPPVVLNSTEVAKEAMVANSHHIYPKAIQSTDSAYS |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_Ung0001680 | OsLima_Ung0001680.01 | ChrUN-Ctg33 | 370968 | 376810 | - | NAM | ||
| CDS seq | atggttgctaccagcgactatggtgatttccacaaaatggtgaagcgttatgtcatgtcaagcacgctgggtacttctgcacagaaaaaatttcgtgacacaagagatatgatgatcaataacatgttaagcactttccataaactggtgaaagatgacccacatgttcctctgatatttagagatgttttcaaggatgagctattcCGGTTGTCCATGATCCAGAGCTTAGGAGAGGATGTGAGTTCAGTCTACGTGGATGAATTTGGGAGGGACATTTCGAAGGAAGAAATCTACAACGCCACTGTGACCGACATGATGATGTGCGCAATTGAGGTTGATTGGAGAGACTTCTTCTCCTACCTCAGCTGGGTTCCAAACAAGAGCTTCGAAACAAGAGTGTTTACCGCAGAAGCTAGACGAACCGCGATACTACCTTGGTCGCCACAGAATGGGCCATGTACGAGCTTGCCAAGAACCCTGACAAACAGGCAAGAAATATTTGTTACTCTGTTCCAGCTCATTCTTGGCATTATCAACCCAAACGTTTTCTTTTGGGCGTTTTTCTGGTCATGCCAGGAACGGCTTTACCAAGAAATCCGGGAGGTGTGCGGCGACGAGACGGTCACCGAGGAGCACCTGCCGCGGCTGCCGTACCTCAACGCCGTCTTCCACGAGACGCTGCGCCGCCACTCCCCTGTCCCGCTCATACCCCCGAGGTTCATGGTGATCAACCTGTACGGGTGCAACATGAACAAGAAGGAGTGGGAGTCGCCGGAGGAGTGGGTGCCAGAGAGGTTCACCGGCGGGAGGTTGGAGGTGGCAGACATGTACAAGACGATGGCGTTCGGCGCCGGGAGGAGGGCCTGCGCAGGGAGCCTACAGGTGATGCACATCGCGTGCACCGCCATCGCGCGCTTCGTGCAGGAGTTCGGGTGGAGGCTGACGGAGGGCGACGAGGAGAAGGTGGACACCGTGCAGTTCACCGCCTACAAGCTCCACCCGCTTCATGTCCACCTCACGCCCAGAGGAAGGATGTGA
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| Protein seq | MVATSDYGDFHKMVKRYVMSSTLGTSAQKKFRDTRDMMINNMLSTFHKLVKDDPHVPLIFRDVFKDELFRLSMIQSLGEDVSSVYVDEFGRDISKEEIYNATVTDMMMCAIEVDWRDFFSYLSWVPNKSFETRVFTAEARRTAILPWSPQNGPCTSLPRTLTNRQEIFVTLFQLILGIINPNVFFWAFFWSCQERLYQEIREVCGDETVTEEHLPRLPYLNAVFHETLRRHSPVPLIPPRFMVINLYGCNMNKKEWESPEEWVPERFTGGRLEVADMYKTMAFGAGRRACAGSLQVMHIACTAIARFVQEFGWRLTEGDEEKVDTVQFTAYKLHPLHVHLTPRGRM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | ChrUN-Ctg33 | 374792 | 376595 | - | OsLima_Ung0001680.01 | OsLima_Ung0001680.01,OsLima_Ung0001680.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0570566 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g37364 | SBH | 1.005090 | 1.207899 | 1.665302 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0570100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0020100 | SBH | 0.0 | 0.0 | 0.577883 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0019940 | SBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0020040 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0019750 | SBH | 0.0 | 0.023301 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0020240 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0347400 | SBH | 5.7947685 | 8.748556 | 4.7110725 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0019690 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0321800 | SBH | 7.9898025 | 6.780112 | 6.625054 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0020130 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0020140 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0019770 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0020430 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0019910 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G019790 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0019930 | SBH | 0.0 | 0.0 | 0.0 |
