Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_Ung0001660 | OGI:06043270 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | ChrUN-Ctg33:339304-341025 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGAGGAGGACGACGGCACCGTGGCAGTTGAGGCGAAGGTGTTGCATGGGGCCTCATTGCCAGACGCTGGGTAGCACCGTAACCAACAAGGATGTGTTCACTTGGGCCAAGAGCAACAACCGGCGGCTGCTCCACGTCGACGACGTTGATTGATAGGACAAGCAAGTAAGGAAATGGCACTCCAATTTGCATCTGTATACCCTCCTTCACCTTCATGCATGAAGCCCAATTTCCTTTTGCAAATCAAATTAACGTACAATCTCCAATATTACCTAATGTGAATTGATGGGCTACACAGGTTCTACATTTACACACCGTGCTACATGTGGATGGCCGTAGAGGTAGAGGATATTATGAAGTCCACTGGTGATGGTGATCGTTTGTTATTTTTCTTTGGCTCGTCGTGTCTATGACAGGAACGAGAGTGTTTTTGCATTTTTTTTTATGCTTGCTAGATGATGGATGGCTGCTACTTCGCATCATCAAGCTCATCTCTATACCACGCCGCTACATCCTTCTATGATTCCATCATCGACTACCGCTCACCACCCAGTTGCCCTATCCACTACCAGTCACAAGACATAGACTAACCTCTCCATCCTTATATATAAAAAGATCTAGCAAAGCCACCAGGATCCTAGCTTCAAGATGGATTTTTGACTGAATCATTTTTTTTCTTTTCTAGTTTGATTCACTTGTGAGTAATTTATCACTTGCGTATGATTGAGCCTATAATTTTTTTTACTCGTATGGCCATTTTGTGATACAGATTAATAATACTCTTAGTATCAGTTTTTAGTATCAGTTTTTACTCTTATACTGTGTATTGAACACATCAGTAAACATATTATTATACAGTGGCTATAAGATCATAGGTTATATCGAGAGGAAGGTGCTAGTTATCTTACTCGCAGACCATGAAGTCTAAACAATATTTATAACAAATCACCCACATATTTTGGAAACCCTCTATTAAGGGAATTTGGTTTATTTTTTGTTCCAGAAAAAATGTTTCACCTAGTGTACTCACAATGTTTCACTATGTATAGGTCTAATATTGCAGTGAACTGAAATATTCCATTGCAACAAAAAACCCACATATTTTGGAAACCCCCTATTAAGGGAATTCGTTTCATTTTTCGTTCCGCCGAAAAATGTTTCACCTAGTATACTTATAATGTTTCACTATATATGGATCAAATGTTGCAGTGAACTGAAACATTTTTTCGTTATTTGCTGAAACATTATTTTTATATAAGGTGAAACAACACCTGATTTAAATGAGTGAAACATTTTCGATGAAACCATTCCGATATACCTAGTGGAACATCGTGCAATATTTAAAAATAATTCAATAATAAGCTAAATTTTTTTCGTCAGAATATATCCATGTGTGGTCTTGTTTTGAAGATTTAATTGTAATGAATTTAATGGTGCAATCAGATCATGATTTGGATAAGTAATTTAAGAGAAAAATCAGTTTAAAGTAGTTTTGCACGTAAATCGGCTGCTGACGTCATGCTGACATCAGCGCCCGATTTTAACCTCTTCCCATCGGGCGCCTGAGCCGGAGTCGCGTCCTTGTAAGCTGGTAGTAATTCTTTTACAGCCATCTAGGAATGGTGCCGTATGATGTGAGTAAATTTATTACTTTTGAAGGGGGTATTTATGTGAGTAAATTTGTCACTTTTAAATGAGCAGATGTGGGAGTCTGGGAGTAG
More
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| CDS seq | ATGGAGGAGGACGACGGCACCGTGGCAGTTGAGGCGAAGACGCTGGGTAGCACCGTAACCAACAAGGATGTGTTCACTTGGGCCAAGAGCAACAACCGGCGGCTGCTCCACGTCGACGACGTTCTACATTTACACACCGTGCTACATGTGGATGGCCGTAGAGATGTGGGAGTCTGGGAGTAG |
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| Protein seq | MEEDDGTVAVEAKTLGSTVTNKDVFTWAKSNNRRLLHVDDVLHLHTVLHVDGRRDVGVWE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_Ung0001660 | OsLima_Ung0001660.01 | ChrUN-Ctg33 | 339304 | 341025 | + | NAM | ||
| CDS seq | ATGGAGGAGGACGACGGCACCGTGGCAGTTGAGGCGAAGACGCTGGGTAGCACCGTAACCAACAAGGATGTGTTCACTTGGGCCAAGAGCAACAACCGGCGGCTGCTCCACGTCGACGACGTTCTACATTTACACACCGTGCTACATGTGGATGGCCGTAGAGATGTGGGAGTCTGGGAGTAG |
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| Protein seq | MEEDDGTVAVEAKTLGSTVTNKDVFTWAKSNNRRLLHVDDVLHLHTVLHVDGRRDVGVWE |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0020080 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0020020 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0020220 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0019670 | RBH | 0.000000 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0020130 | SBH | 0.000000 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0019750 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0074270 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
