Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0021210 | OGI:12069120 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:25755764-25756300 | ||||||||
| Gene Symbol | PR5-1 | ||||||||||
| DNA seq | ctatgggcagaagacgacttggtagttgctgttgccgccgcaggcgtgtgtcttggtgttgtcttcggggaagaggtaagcatcggggcagcggctgtccctgcaggtgaccgtcacgccggagctgcaggagaagctcatgggcaagttgtagccgtcgatcaccgacaggtcgtagaagtcctggctgccgccgagggtgaactccgccagcgtcatcggcggccgcccggagaggctgcacgacagcgcgccgccgcagtcgccggtggcgcagccgccctgccggcgccgtcgaagttgcagcctgtccggccccacaccctgccggagctggtcccggcgggcacgttgatggtccacgtctgccccgggctcagctgcgtgccgccgcccaccggcgtcgccgccggccacaccgtgaacgagcaccggttggtgatggtgaaggtcgccgcgttggcgccgccggcggcgagggtcgccaccaggaccacgacgacgcactgcgggagaggcggccggagctgacgccat
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| CDS seq | atggcgtcagctccggccgcctctcccgcagtgcgtcgtcgtggtcctggtggcgaccctcgccgccggcggcgccaacgcggcgaccttcaccatcaccaaccggtgctcgttcacggtgtggccggcggcgacgccggtgggcggcggcacgcagctgagcccggggcagacgtggaccatcaacgtgcccgccgggaccagctccggcagggtgtggggccggacaggctgcaacttcgacggcgccggcagggcggctgcgccaccggcgactgcggcggcgcgctgtcgtgcagcctctccgggcggccgccgatgacgctggcggagttcaccctcggcggcagccaggacttctacgacctgtcggtgatcgacggctacaacttgcccatgagcttctcctgcagctccggcgtgacggtcacctgcagggacagccgctgccccgatgcttacctcttccccgaagacaacaccaagacacacgcctgcggcggcaacagcaactaccaagtcgtcttctgcccatag
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| Protein seq | MASAPAASPAVRRRGPGGDPRRRRRQRGDLHHHQPVLVHGVAGGDAGGRRHAAEPGADVDHQRARRDQLRQGVGPDRLQLRRRRQGGCATGDCGGALSCSLSGRPPMTLAEFTLGGSQDFYDLSVIDGYNLPMSFSCSSGVTVTCRDSRCPDAYLFPEDNTKTHACGGNSNYQVVFCP |
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| Function | Thaumatin-like protein [UniProtKB/Swiss-Prot:P31110] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0021210 | OsLima_12g0021210.01 | Chr12 | 25755764 | 25756300 | - | NAM | ||
| CDS seq | atggcgtcagctccggccgcctctcccgcagtgcgtcgtcgtggtcctggtggcgaccctcgccgccggcggcgccaacgcggcgaccttcaccatcaccaaccggtgctcgttcacggtgtggccggcggcgacgccggtgggcggcggcacgcagctgagcccggggcagacgtggaccatcaacgtgcccgccgggaccagctccggcagggtgtggggccggacaggctgcaacttcgacggcgccggcagggcggctgcgccaccggcgactgcggcggcgcgctgtcgtgcagcctctccgggcggccgccgatgacgctggcggagttcaccctcggcggcagccaggacttctacgacctgtcggtgatcgacggctacaacttgcccatgagcttctcctgcagctccggcgtgacggtcacctgcagggacagccgctgccccgatgcttacctcttccccgaagacaacaccaagacacacgcctgcggcggcaacagcaactaccaagtcgtcttctgcccatag
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| Protein seq | MASAPAASPAVRRRGPGGDPRRRRRQRGDLHHHQPVLVHGVAGGDAGGRRHAAEPGADVDHQRARRDQLRQGVGPDRLQLRRRRQGGCATGDCGGALSCSLSGRPPMTLAEFTLGGSQDFYDLSVIDGYNLPMSFSCSSGVTVTCRDSRCPDAYLFPEDNTKTHACGGNSNYQVVFCP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0628600 | SBH | 47.351391 | 52.751926 | 3.897527 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g43410 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0629600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0021660 | SBH | 1.697910 | 13.506574 | 5.360141 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0021740 | SBH | 1.155115 | 2.681408 | 4.860201 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0022100 | SBH | 37.751743 | 18.409523 | 6.289042 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0021090 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0361600 | SBH | 1.0725805 | 6.766133 | 0.0610265 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0393600 | SBH | 15.0633095 | 39.1618405 | 0.0785845 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0021220 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0021440 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0021360 | SBH | 0.000000 | 23.299801 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0021420 | SBH | 2.109883 | 0.0 | 11.000381 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0021640 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G021100 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0020860 | SBH | 0.370707 | 0.0 | 0.0 |
