Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0020410 | OGI:12067320 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:24999286-25002953 | ||||||||
| Gene Symbol | PCF8, OsPCF8 | ||||||||||
| DNA seq | agctgcagcttgcagggcgcccagctcacagcatcagagagattcagagtagctcagagtgagcttttgctcgttggtccctcgaattctggagctagttcgcccgggtcctcggtttcgatcgatccccttcaggtgagcggctttgattcctctctggggcggctgaatttgagccggggattgatttggggtttttcttggaaggataggaggtgaaatatctcgatttggattgatcttcaggtgtgtgtgtgttttggtctggtgttgatgtgttttgggagcaagatttgatgcattctgttcggttgaattcgattttcgtctgttggatggatgcagttttgaaaaatttccccccttggaggaaaatttgggaggtgtttcttcagagatttgtttcctttaagtaatgcaggaaaatggtgatgaactgatgaaagatagtggtttgagagtttcagttaaagctattttccccccattttttcttggaattattttgtccagagatttcttgatttgcttgccagatttgactctgggaagatgggagcttctgatacatgacctcaaattacaaattctttaatcaactcgacgttttgATTattcttcttgttgttagccctaattgaagttcgttttgacaaaaaaagttgtcacagcaaagttggcaccataaataattctgcaagaacaaccgcaaaaggttcagatttatgtttgcttttactagattcttccacaaagctcctactttttcataaattgcaatgtacaatccatttacaaatcaagggagagcaaatgggctaccaaattttactagatttgcaaattgcaacctctgagaagattttgtggacaatttgaactcccacaaatctttgttttttttgcaatctttgccacctctaaagctatcatttcgtaaagaatttttttttacaaattttatcccctttttccccccaaattcgagcagacgaagcggaggcggatttcgcatgagctagcgcaagcgtcagccatggaggaggtcgtcggcggcggcaaggagcgcaagcgcccgcgcggcgcgctcgtcggcgtcggcggcgggggcgagtcggcggcgacggcggcggcgtggcggacgagccgggtggcgcgggcggcggcgggggggaaggacaggcacagcaaggtggtgacgtcgcgggggctccgcgaccgccgggtgaggctgtcggtgccgacggccatcgcgttctacgacatccaggaccgcctcggcgtcgaccagccgagcaaggccatcgagtggctcatccgcgccgccgcggccgccatcgacgctctcccgtcgctcgactgctccttcgccctccccgccgccgcctcctcgccgccgccgccggccgccgacgacgccgaggtcagcacatccgagaccagcaagagctccgtgctctccctcgccaacgccccctgcgacaacggcggcggcgcgttcgccgagctcctccactgctcgaacaccaacggcagcaagccattgcagcaacagcagcaggcgacgcttgcgtactacgcggcggcgcagagcgcgcacatggcggcgcccatgtcgttcgaggtgatggcgatgccgCcccacctcgcgttctcgcaggagcagcagcagcacgccacggtggccgccttcgatcggggcacacttcagtccaatgcgtcgctgtggccgccgccgccgcagccgccgccgtcgcagcacccgttcctgctgcagaggttcgccgccgctccggctgaggtcgccggcctcccgttcttccttgcaggcggcgtcggcggcgctgctgctgctgctccggcggcgacgaccaatggtggggagcggaggctgcagctctgggacttcaaggaggagaggaagacatgactaagtaagtaacatttttgttaaaattttcgcatgtttttaatctttcgatttgctagatgaagctgttccattgacaacattcagataataaaatcttgcgtattttattttaaaTtttttaaagaaggcatttttttacctggTttttacatccaaccggatatatgcaacttattaaaattagaaacttagtctctcaaaaaacctgatatgaaatttgctcatatggatatttgaacttaagattttagggtgctactcctactcaggtagcatttgatgtattggtcgtcaaggataggtggtagattacaatagcttcgcttgttggtaaacatctatatgtgcagatgaaaccattagattgttttgttcttgatggccaaaatgtagtgttgttcttattcagcatccatgtgtagcactaatttgcttaagcactttgcaagaccattgtggtgaacatgctagctagagatactgagatatttcagtgccaagctgctattggttaatttggagttgtcatctagaacaagtaaatgcagttagctagtttttccctgatgaggagcagtagcaccataattatagcagaagttatcatgaagttaactcgtcgaattgagaatagtgaactgttgtgccagttaaaattatttagcattattatgtaccaggcttgaaaaaaaaagagagctgtatttctcaaactatggacgagcacatcactgaatccagataactttatgcaacagagtgtcctggactacaaaatactaaactatgccccatagagactgtagtgtacatgaaacatggtttggtctcaattcatttcagtcatggggtttagttttcactgttgcaatatgagtccagattccaaagtgtcaatgtcttctttggaccatgtgtgcttcatcttgaccatgattTAtatttcagtcccatttgccattgattgtaaattgaacactagtctgttctcctatttctattgaatctatcatgaagaactctgtcttctgcaagtggttcaaatggactggttataactcAtaaccagttccttgccaagttaatgtttaaactacctaattgctttcagcaatttgtagggaccatctaaaaaaaactgtatgaaaaatattcaatggagacctagctaatgacctagtgtgctagacatacatcaaagttctaatttgcactatactttgatcacattccaaggctttctgcactaTttaagattatctactgctaccattatactatcaagtagtagggtaacatgaatctcacttaatctgattggagcacattctttcatgcctcaactactttttgaaaaccttgttttacattatgtatgcaatctcatttactaatattctcttatcgtcctaatttcatcaattcagaattgcctggtgttatgtctggtgttgtgccacaagtcaaagccgatcagcatgaagaaaaattcagaacaagaaaaagtattcaggaactgaagatgatgtcagcgccaggAaaaaaacttaaacaccagaaaaatggatgtaattccagatctatgattcttccggctcatgatttccatttctcTattctctaacaatgtacgaTttaattgtaaccttgactgtgttgtgattcagaaaccatgtcattctgttgcctgtacttcgataattttggcacatactgcttaatcagagAtgcctga
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| CDS seq | atggaggaggtcgtcggcggcggcaaggagcgcaagcgcccgcgcggcgcgctcgtcggcgtcggcggcgggggcgagtcggcggcgacggcggcggcgtggcggacgagccgggtggcgcgggcggcggcgggggggaaggacaggcacagcaaggtggtgacgtcgcgggggctccgcgaccgccgggtgaggctgtcggtgccgacggccatcgcgttctacgacatccaggaccgcctcggcgtcgaccagccgagcaaggccatcgagtggctcatccgcgccgccgcggccgccatcgacgctctcccagAtgcctga |
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| Protein seq | MEEVVGGGKERKRPRGALVGVGGGGESAATAAAWRTSRVARAAAGGKDRHSKVVTSRGLRDRRVRLSVPTAIAFYDIQDRLGVDQPSKAIEWLIRAAAAAIDALPDA |
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| Function | Transcription factor PCF8 [UniProtKB/Swiss-Prot:A2ZMR9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0020410 | OsLima_12g0020410.01 | Chr12 | 24999286 | 25002953 | + | NAM | ||
| CDS seq | atggaggaggtcgtcggcggcggcaaggagcgcaagcgcccgcgcggcgcgctcgtcggcgtcggcggcgggggcgagtcggcggcgacggcggcggcgtggcggacgagccgggtggcgcgggcggcggcgggggggaaggacaggcacagcaaggtggtgacgtcgcgggggctccgcgaccgccgggtgaggctgtcggtgccgacggccatcgcgttctacgacatccaggaccgcctcggcgtcgaccagccgagcaaggccatcgagtggctcatccgcgccgccgcggccgccatcgacgctctcccagAtgcctga
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| Protein seq | MEEVVGGGKERKRPRGALVGVGGGGESAATAAAWRTSRVARAAAGGKDRHSKVVTSRGLRDRRVRLSVPTAIAFYDIQDRLGVDQPSKAIEWLIRAAAAAIDALPDA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0616400 | RBH | 0.0 | 0.728749 | 2.154116 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g42190 | RBH | 0.0 | 0.473910 | 0.540532 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0616400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0020890 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0020990 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0021330 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0020650 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0020290 | RBH | 0.0 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0351300 | RBH | 3.0074075 | 2.053779 | 3.4305635 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0020160 | RBH | 0.000000 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0381200 | RBH | 2.9379375 | 0.772202 | 8.032243 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0020640 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0020580 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0020640 | RBH | 0.255122 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0020830 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G020320 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0020110 | RBH | 0.0 | 0.0 | 0.000000 |
