Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0020310 | OGI:12067130 | 11/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:24940830-24943330 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttacgtacacatgttaacatcaatagaaaataaaatagatgcagaacaataaatggggatcgaattcagatattatttgtttgtctaccattcagaatacttggaatgcagaaatgtcacatgtccattctaattatgctacacacgatccattccatgctcaggagttcggatgagcttaatcaaggtctcataatattatttccccacaaacaagaaccacagtaaaagaagtacataacaacagggacaacagaagtaaatacagaactgacagaaagtgcctaatatagagaagccaaattcagatattggctatcctctcttgcagctcagttcatctcccttagatcggcatgcctttgggcacaatctggtcctttatccacatgtagataggcaccagaacatagtatgcagcacatattgttcccatgaggaagcggaagaggaaggtgataggattcacaggtttgctgacatcctcaacctttggaccaagctgcaggggaacaattgaactcttcagtctaatcactacacaccaacatgataatgtatttccaaacgtaagctaaacaaagtcaggtgttcacatttaaaaattaatttcagctggagatggttttttgagctgtcccatttatttgtaataaccaggagaaataatgttaagagaagcaagAaaaaaagaaggaaataaagagaagaaaacatgaaatcaggaagattggtttcttcacaggaaagtttcatgtgcttacatgccatcaagcactatgatgggtaagatgctataacctataacagccttttcacatgaacAaaaatatttaaattgactcagattatacaagtcattatataatatgcaattatgtatgttagaaagtgatccaaacaaatgtattagcatcttatatccttcacatagcactacatttgagctgagactgagacatggcacaggctagctaggctacaagttttgtcgagagaacatttaggcggctgagaatggcatattgtcgacacttatctcttcatcccatcaataagagagaaaaatgaatacctacaatgttcattaatctcatgcaagtgagaaaaatattgacatgttcactcttcaacattcgtcatacccaggtgttgcgttgccaatccatgagtaataatcaacatataaatcagtaagaaataaaagtaacgacAaaaagagtcatccgaacaaaggaggcttatgtgaatttgcaacttgcaaggcaaattagcAaaaaaaaaaaaaacctgcaaaggggagtctccatgttctcttttgacgcccgtcacagagcatcccataatcaggccatgccttcggacaccacggtaccattttggtccaatccttttgagcttgacatccttgaaccctgcctttttgaaccactcaatatactcctcttccttcgggaagagcatccacatgtcagcgaaaaagcgagacagccagaaggttgggtgcacggggccaatcatgcaagccactccaccaagcctcaaaaccctgtaagcttccttgattcctcgctgcggatcgggccaatactcgatgctgtacaacaatcacaccccCTcatcaatcacaaccggaacaccggaacccgcaaagacttgactaaaaatcactagtgaagtaatgaaatgcataaccatagcaagttgttcattgttcattgttcatggttcatgtagaaattgaaattcacaatgtgcgtgcgatatcgacacggtttggaggtgaagagagcaaagtgagagggtgaacctgccggcggagacatagcggtcgaaggtgtcggtggggaaggggaggtcctcggcgtcgccctccatgatggtgacgcccttgagggcctccttctcccgggccttctcgagctggtgcggggactggtcgagcagcgtgacgttctccgggtcgacgcgcttgacgatcccgagcgtggtgaaccccgtcccgccgccgacgtcgacgaccctgagcttgcggctgtagaggtcggcgggctcgagggcgtcgtcccgcatgtcctccgtccagtggcccgggttgatgacgtggtcgtagacgatggagaggaagcggtagaaccagaacgcctccttcttgtgctggatgaaccgcggctgcgacatcggcctcgccgccgccgacgacgacgacgccgcgcacctcagccgagccacggagatgttgccgccgcctcccccacgcctggtgagcacgaggggcctcgacttggtggtggtggtggagaagccgaggccgcgcggcggcctgatcctgcccggcgcggagtgggtgccaacgccgcccgctggggcgtaggcggaggaggccatcgccattgctcctcctcgtcacgccgccgccgccgccgccgccacgaaggggagaggagagagtggaagaggatgggaGgggggagagtggcgaggagagagggagtcacgag
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| CDS seq | atggcgatggcctcctccgcctacgccccagcgggcggcgttggcacccactccgcgccgggcaggatcaggccgccgcgcggcctcggcttctccaccaccaccaccaagtcgaggcccctcgtgctcaccaggcgtgggggaggcggcggcaacatctccgtggctcggctgaggtgcgcggcgtcgtcgtcgtcggcggcggcgaggccgatgtcgcagccgcggttcatccagcacaagaaggaggcgttctggttctaccgcttcctctccatcgtctacgaccacgtcatcaacccgggccactggacggaggacatgcgggacgacgccctcgagcccgccgacctctacagccgcaagctcagggtcgtcgacgtcggcggcgggacggggttcaccacgctcgggatcgtcaagcgcgtcgacccggagaacgtcacgctgctcgaccagtccccgcaccagctcgagaaggcccgggagaaggaggccctcaagggcgtcaccatcatggagggcgacgccgaggacctccccttccccaccgacaccttcgaccgctatgtctccgccggcagcatcgagtattggcccgatccgcagcgaggaatcaaggaagcttacagggttttgaggcttggtggagtggcttgcatgattggccccgtgcacccaaccttctggctgtctcgctttttcgctgacatgtggatgctcttcccgaaggaagaggagtatattgagtggttcaaaaaggcagggttcaaggatgtcaagctcaaaaggattggaccaaaatggtaccgtggtgtccgaaggcatggcctgattatgggatgctctgtgacgggcgtcaaaagagaacatggagactcccctttgcaggtttttttttttttTgctaatttgccttgcaagttgcaaattcacataagcctcctttgttcggatgactcttttTgtcgttacttttatttcttactgatttatatgttgattattactcatggattggcaacgcaacacctgggtatgacgaatgttgaagagtga
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| Protein seq | MAMASSAYAPAGGVGTHSAPGRIRPPRGLGFSTTTTKSRPLVLTRRGGGGGNISVARLRCAASSSSAAARPMSQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLYSRKLRVVDVGGGTGFTTLGIVKRVDPENVTLLDQSPHQLEKAREKEALKGVTIMEGDAEDLPFPTDTFDRYVSAGSIEYWPDPQRGIKEAYRVLRLGGVACMIGPVHPTFWLSRFFADMWMLFPKEEEYIEWFKKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKREHGDSPLQVFFFFANLPCKLQIHISLLCSDDSFCRYFYFLLIYMLIITHGLATQHLGMTNVEE |
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| Function | 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase 2, chloroplastic [UniProtKB/Swiss-Prot:Q2QM69] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0020310 | OsLima_12g0020310.02 | Chr12 | 24940830 | 24943330 | - | NAM | ||
| CDS seq | atggcgatggcctcctccgcctacgccccagcgggcggcgttggcacccactccgcgccgggcaggatcaggccgccgcgcggcctcggcttctccaccaccaccaccaagtcgaggcccctcgtgctcaccaggcgtgggggaggcggcggcaacatctccgtggctcggctgaggtgcgcggcgtcgtcgtcgtcggcggcggcgaggccgatgtcgcagccgcggttcatccagcacaagaaggaggcgttctggttctaccgcttcctctccatcgtctacgaccacgtcatcaacccgggccactggacggaggacatgcgggacgacgccctcgagcccgccgacctctacagccgcaagctcagggtcgtcgacgtcggcggcgggacggggttcaccacgctcgggatcgtcaagcgcgtcgacccggagaacgtcacgctgctcgaccagtccccgcaccagctcgagaaggcccgggagaaggaggccctcaagggcgtcaccatcatggagggcgacgccgaggacctccccttccccaccgacaccttcgaccgctatgtctccgccggcagcatcgagtattggcccgatccgcagcgaggaatcaaggaagcttacagggttttgaggcttggtggagtggcttgcatgattggccccgtgcacccaaccttctggctgtctcgctttttcgctgacatgtggatgctcttcccgaaggaagaggagtatattgagtggttcaaaaaggcagggttcaaggatgtcaagctcaaaaggattggaccaaaatggtaccgtggtgtccgaaggcatggcctgattatgggatgctctgtgacgggcgtcaaaagagaacatggagactcccctttgcagcttggtccaaaggttgaggatgtcagcaaacctgtgaatcctatcaccttcctcttccgcttcctcatgggaacaatatgtgctgcatactatgttctggtgcctatctacatgtggataaaggaccagattgtgcccaaaggcatgccgatctaa
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| Protein seq | MAMASSAYAPAGGVGTHSAPGRIRPPRGLGFSTTTTKSRPLVLTRRGGGGGNISVARLRCAASSSSAAARPMSQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLYSRKLRVVDVGGGTGFTTLGIVKRVDPENVTLLDQSPHQLEKAREKEALKGVTIMEGDAEDLPFPTDTFDRYVSAGSIEYWPDPQRGIKEAYRVLRLGGVACMIGPVHPTFWLSRFFADMWMLFPKEEEYIEWFKKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKREHGDSPLQLGPKVEDVSKPVNPITFLFRFLMGTICAAYYVLVPIYMWIKDQIVPKGMPI
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0020310 | OsLima_12g0020310.01 | Chr12 | 24940830 | 24943330 | - | NAM | ||
| CDS seq | atggcgatggcctcctccgcctacgccccagcgggcggcgttggcacccactccgcgccgggcaggatcaggccgccgcgcggcctcggcttctccaccaccaccaccaagtcgaggcccctcgtgctcaccaggcgtgggggaggcggcggcaacatctccgtggctcggctgaggtgcgcggcgtcgtcgtcgtcggcggcggcgaggccgatgtcgcagccgcggttcatccagcacaagaaggaggcgttctggttctaccgcttcctctccatcgtctacgaccacgtcatcaacccgggccactggacggaggacatgcgggacgacgccctcgagcccgccgacctctacagccgcaagctcagggtcgtcgacgtcggcggcgggacggggttcaccacgctcgggatcgtcaagcgcgtcgacccggagaacgtcacgctgctcgaccagtccccgcaccagctcgagaaggcccgggagaaggaggccctcaagggcgtcaccatcatggagggcgacgccgaggacctccccttccccaccgacaccttcgaccgctatgtctccgccggcagcatcgagtattggcccgatccgcagcgaggaatcaaggaagcttacagggttttgaggcttggtggagtggcttgcatgattggccccgtgcacccaaccttctggctgtctcgctttttcgctgacatgtggatgctcttcccgaaggaagaggagtatattgagtggttcaaaaaggcagggttcaaggatgtcaagctcaaaaggattggaccaaaatggtaccgtggtgtccgaaggcatggcctgattatgggatgctctgtgacgggcgtcaaaagagaacatggagactcccctttgcaggtttttttttttttTgctaatttgccttgcaagttgcaaattcacataagcctcctttgttcggatgactcttttTgtcgttacttttatttcttactgatttatatgttgattattactcatggattggcaacgcaacacctgggtatgacgaatgttgaagagtga
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| Protein seq | MAMASSAYAPAGGVGTHSAPGRIRPPRGLGFSTTTTKSRPLVLTRRGGGGGNISVARLRCAASSSSAAARPMSQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLYSRKLRVVDVGGGTGFTTLGIVKRVDPENVTLLDQSPHQLEKAREKEALKGVTIMEGDAEDLPFPTDTFDRYVSAGSIEYWPDPQRGIKEAYRVLRLGGVACMIGPVHPTFWLSRFFADMWMLFPKEEEYIEWFKKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKREHGDSPLQVFFFFANLPCKLQIHISLLCSDDSFCRYFYFLLIYMLIITHGLATQHLGMTNVEE
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0020310 | OsLima_12g0020310.03 | Chr12 | 24940830 | 24943330 | - | NAM | ||
| CDS seq | atggcgatggcctcctccgcctacgccccagcgggcggcgttggcacccactccgcgccgggcaggatcaggccgccgcgcggcctcggcttctccaccaccaccaccaagtcgaggcccctcgtgctcaccaggcgtgggggaggcggcggcaacatctccgtggctcggctgaggtgcgcggcgtcgtcgtcgtcggcggcggcgaggccgatgtcgcagccgcggttcatccagcacaagaaggaggcgttctggttctaccgcttcctctccatcgtctacgaccacgtcatcaacccgggccactggacggaggacatgcgggacgacgccctcgagcccgccgacctctacagccgcaagctcagggtcgtcgacgtcggcggcgggacggggttcaccacgctcgggatcgtcaagcgcgtcgacccggagaacgtcacgctgctcgaccagtccccgcaccagctcgagaaggcccgggagaaggaggccctcaagggcgtcaccatcatggagggcgacgccgaggacctccccttccccaccgacaccttcgaccgctatgtctccgccggcagcatcgagtattggcccgatccgcagcgaggaatcaaggaagcttacagggttttgaggcttggtggagtggcttgcatgattggccccgtgcacccaaccttctggctgtctcgctttttcgctgacatgtggatgctcttcccgaaggaagaggagtatattgagtggttcaaaaaggcagggttcaaggatgtcaagctcaaaaggattggaccaaaatggtaccgtggtgtccgaaggcatggcctgattatgggatgctctgtgacgggcgtcaaaagagaacatggagactcccctttgcagagtgaacatgtcaatatttttctcacttgcatgagattaatgaacattgtagcttggtccaaaggttga
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| Protein seq | MAMASSAYAPAGGVGTHSAPGRIRPPRGLGFSTTTTKSRPLVLTRRGGGGGNISVARLRCAASSSSAAARPMSQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDDALEPADLYSRKLRVVDVGGGTGFTTLGIVKRVDPENVTLLDQSPHQLEKAREKEALKGVTIMEGDAEDLPFPTDTFDRYVSAGSIEYWPDPQRGIKEAYRVLRLGGVACMIGPVHPTFWLSRFFADMWMLFPKEEEYIEWFKKAGFKDVKLKRIGPKWYRGVRRHGLIMGCSVTGVKREHGDSPLQSEHVNIFLTCMRLMNIVAWSKG
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0020310 | OsLima_12g0020310.04 | Chr12 | 24941001 | 24941341 | - | IsoSeq | ||
| CDS seq | atgtgctgcatactatgttctggtgcctatctacatgtggataaaggaccagattgtgcccaaaggcatgccgatctaagggagatg |
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| Protein seq | MCCILCSGAYLHVDKGPDCAQRHADLREM |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr12 | 24941905 | 24942426 | - | OsLima_12g0020310.01 | OsLima_12g0020310.01,OsLima_12g0020310.03 | All |
| SE | Chr12 | 24941331 | 24942120 | - | OsLima_12g0020310.03 | OsLima_12g0020310.03,OsLima_12g0020310.02 | All |
| A5 | Chr12 | 24941331 | 24942120 | - | OsLima_12g0020310.01 | OsLima_12g0020310.01,OsLima_12g0020310.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.578068 | 0.641910 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0615400 | RBH | 32.727337 | 37.510548 | 37.858856 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g42090 | RBH | 17.594482 | 18.924511 | 6.068657 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0615400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0020810 | RBH | 6.570999 | 12.585729 | 13.820286 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0020910 | RBH | 6.735639 | 11.080871 | 9.714594 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0021250 | RBH | 12.234430 | 13.733551 | 20.716017 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0020570 | RBH | 2.114557 | 0.351012 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0020190 | RBH | 54.849434 | 22.401571 | 53.145145 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0350200 | RBH | 19.860817 | 10.3636975 | 19.6640405 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0020070 | RBH | 2.096323 | 1.304637 | 3.954368 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0380100 | RBH | 142.371025 | 27.94223 | 52.06637 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0020540 | RBH | 6.818887 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0020480 | RBH | 57.181091 | 29.644806 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0020530 | SBH | 6.721580 | 0.0 | 6.884636 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0020720 | RBH | 6.411427 | 14.060802 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G020220 | RBH | 5.013381 | 9.034984 | 11.892392 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0020010 | RBH | 18.022108 | 12.190606 | 28.752626 |
