Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0019650 | OGI:12066150 | 12/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:24424987-24427528 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | aaaagcaatcatagaatataaaccacaaccatttctataattatattacaatcacattctagctataattaattttccagccccatacaaaagcaagttccagaatacagtttccatacaaaagcacaaaacatgaatacaaaatgattcatccaccatccaactacacaagtcccagccgactacaaagttcctacaggtagtgccaagttcctgcaccaaaaaattccacctagcagccactactaagtttcggcgtatatcttgccagcagccagcaaaaaaaattccaccaagcagcaatgcaacctttagttttgctgcaatgcaactccttaaagagatcaattgcagtgggctcactgtctttgtatttttcttgcttctgcaatgttgagagaaacatgatggcatgagtaatggttatgttaaagtacacagataacacaaaaacatgtcctccagaacaagcattctggttgacattgattctttttgttaaacattgacagtggttgccatgtataaacttaattgatgtcaccccaaataagcataagcatgacaagagcaatcaaaccaaactgatagaaatttatggataaaacatgagcatatttttacatggtcaaagtgtgagataacctgctattctccctccatgttttgctgtagcaggggttagagctttgccacctcttgttgtccttgttttgcactgtagaggtatgccactacagaatggcatattgctatacctatacaatgcaaaacaagggcagcaaaagctgaatagagggccaacccacgctgctgcagaaaaacatgtagggagggctgcagataatctcacatgaagagggagcctactaaagctttaaatcatatagcattatgtagagccactatcaatatgaagatatatatctccactggatctaaacacctccatcaggaaacacaaaaactacatccaactagatgacatcatcattttttccttaccacgacataggcatgtgcaatgtaagaccgagatccggtacgctgctgaaactgaactttttcacggttcagttggtttttggcacatttgtcctgcatatgacagaattataaccaggagaaatacttactatggcaagtaatcgagctgaaagtcaccgtagagctccagtcttcccgtctctagtgctccttgattccttactctgcatacatcacagtgtgcaagtcttcagttcagaagagtctacaatgcatattcaatcctacacacatgatcctatgtatccttaatttaacaaacattgatatcgagtcttaatgctcccgaagatatgcatcagtttactatcctcacctcaacgagcacatcaagatgagcctctggtaccaacctcggttgcatatcctgcaagcaaccaaaaaaaaattatcattagaaagtagaaacacctcaaatcacactggtgcggaagctaaatccaacctggctggggctattgtgctgctcctcgaccaagaacggctcgacgagcgacgcggaggtaagcgcaactCcccctgagtggccgtgagccaagcagatgcgatcgagaagcggcggcgactccgccagtgatcccggcggcaggagtacgtagcgccgacgcggaaagcgtggttgaccccgacctggaggagaaaccaaccaagcacacgattcgtcaatccgattcaaattctcgcaagcaaagccaaggaattcggaggaggggagggcaggcggcgacgcactggtggagatggaaggcgtgccgccgtatcttgatggccttggggtcctggaggaagagcaaagagcagagtggcgtttagtgagagaactcggggaatagcttacgtggcccactttgtcatcctccatccagtgcttccccttgccctccccttccacctccgcgccctccatcgccttcctcctggcggcggcggcgctggccttccatcgccacctgatctgctagccgctcggctgttggcgccggcggtggaacatgtaacgcaccgcccagctggcccgccgtatggaggccgccgacaccgccatcgcgcggtggctgtcccgccacgaccctaccacgtgctcgacggcgtgcgccgcctccgcgacgaggccgatgcgcgcattggccgcctcgagcgccgcgtcgaggaggtcgccgccgtgcagcaggcgtcggccgcccatccgctccccgccatgtccctccccttcacgctcccgcctccgccgccgccgccgccgcccaaggccatggcgatgatggccatggacacgccacccaaggccatggcgatggggatcgaagcgcgaccgaggaggaggaggacgacggcgtggtgggcggcggcgtgagggtggggaaagagaaggtgaaggagatggtgatgagcagcggcgcccgcagcggcgggtgggaggaggaggaaggggacggtggtgacggcggagtggatgctggtggcggcgacacagtggatggagtggatggagttt
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| CDS seq | atggagggcgcggaggtggaaggggagggcaaggggaagcactggatggaggatgacaaagtgggccacgtaagctattccccgagttctctcactaaacgccactctgctctttgctcttcctccaggaccccaaggccatcaagatacggcggcacgccttccatctccaccagtcggggtcaaccacgctttccgcgtcggcgctacgtactcctgccgccgggatcactggcggagtcgccgccgcttctcgatcgcatctgcttggctcacggccactcaggggGagttgcgcttacctccgcgtcgctcgtcgagccgttcttggtcgaggagcagcacaatagccccagccaggatatgcaaccgaggttggtaccagaggctcatcttgatgtgctcgttgagagtaaggaatcaaggagcactagagacgggaagactggagctctacggtga
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| Protein seq | MEGAEVEGEGKGKHWMEDDKVGHVSYSPSSLTKRHSALCSSSRTPRPSRYGGTPSISTSRGQPRFPRRRYVLLPPGSLAESPPLLDRICLAHGHSGGVALTSASLVEPFLVEEQHNSPSQDMQPRLVPEAHLDVLVESKESRSTRDGKTGALR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0019650 | OsLima_12g0019650.02 | Chr12 | 24425767 | 24427528 | - | NAM | ||
| CDS seq | atggagggcgcggaggtggaaggggagggcaaggggaagcactggatggaggatgacaaagtgggccacgtaagctattccccgagttctctcactaaacgccactctgctctttgctcttcctccaggaccccaaggccatcaagatacggcggcacgccttccatctccaccagtcggggtcaaccacgctttccgcgtcggcgctacgtactcctgccgccgggatcactggcggagtcgccgccgcttctcgatcgcatctgcttggctcacggccactcaggggGagttgcgcttacctccgcgtcgctcgtcgagccgttcttggtcgaggagcagcacaatagccccagccaggttggatttagcttccgcaccagtgtgatttga
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| Protein seq | MEGAEVEGEGKGKHWMEDDKVGHVSYSPSSLTKRHSALCSSSRTPRPSRYGGTPSISTSRGQPRFPRRRYVLLPPGSLAESPPLLDRICLAHGHSGGVALTSASLVEPFLVEEQHNSPSQVGFSFRTSVI |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0019650 | OsLima_12g0019650.01 | Chr12 | 24425767 | 24427528 | - | NAM | ||
| CDS seq | atggagggcgcggaggtggaaggggagggcaaggggaagcactggatggaggatgacaaagtgggccacgtaagctattccccgagttctctcactaaacgccactctgctctttgctcttcctccaggaccccaaggccatcaagatacggcggcacgccttccatctccaccagtcggggtcaaccacgctttccgcgtcggcgctacgtactcctgccgccgggatcactggcggagtcgccgccgcttctcgatcgcatctgcttggctcacggccactcaggggGagttgcgcttacctccgcgtcgctcgtcgagccgttcttggtcgaggagcagcacaatagccccagccaggatatgcaaccgaggttggtaccagaggctcatcttgatgtgctcgttgagagtaaggaatcaaggagcactagagacgggaagactggagctctacggtga
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| Protein seq | MEGAEVEGEGKGKHWMEDDKVGHVSYSPSSLTKRHSALCSSSRTPRPSRYGGTPSISTSRGQPRFPRRRYVLLPPGSLAESPPLLDRICLAHGHSGGVALTSASLVEPFLVEEQHNSPSQDMQPRLVPEAHLDVLVESKESRSTRDGKTGALR |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0019650 | OsLima_12g0019650.03 | Chr12 | 24424987 | 24427527 | - | IsoSeq | ||
| CDS seq | aactccatccactccatccactgtgtcgccgccaccagcatccactccgccgtcaccaccgtccccttcctcctcctcccacccgccgctgcgggcgccgctgctcatcaccatctccttcaccttctctttccccaccctcacgccgccgcccaccacgccgtcgtcctcctcctcctcggtcgcgcttcgatccccatcgccatggccttgggtggcgtgtccatggccatcatcgccatggccttgggcggcggcggcggcggcggaggcgggagcgtgaaggggagggacatggcggggagcggatgggcggccgacgcctgctgcacggcggcgacctcctcgacgcggcgctcgaggcggccaatgcgcgcatcggcctcgtcgcggaggcggcgcacgccgtcgagcacg
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| Protein seq | NSIHSIHCVAATSIHSAVTTVPFLLLPPAAAGAAAHHHLLHLLFPHPHAAAHHAVVLLLLGRASIPIAMALGGVSMAIIAMALGGGGGGGGGSVKGRDMAGSGWAADACCTAATSSTRRSRRPMRASASSRRRRTPSST |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr12 | 24426350 | 24426663 | - | OsLima_12g0019650.02 | OsLima_12g0019650.03,OsLima_12g0019650.01,OsLima_12g0019650.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.508773 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0607400 | RBH | 6.399026 | 2.957556 | 2.919947 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g41430 | RBH | 3.056522 | 2.213323 | 0.831210 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0607400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0020210 | RBH | 1.021442 | 5.977299 | 3.524765 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0020310 | RBH | 0.318843 | 0.315621 | 2.063965 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0342900 | RBH | 10.897376 | 10.7082815 | 23.4599515 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0019410 | RBH | 0.677660 | 0.224574 | 1.107427 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0374100 | RBH | 10.7269445 | 10.360205 | 32.3028195 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0019860 | RBH | 1.066931 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0019800 | RBH | 4.073636 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0074340 | RBH | 1.228647 | 0.0 | 1.819449 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0020030 | RBH | 0.891823 | 5.782058 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0019380 | RBH | 1.224477 | 3.569173 | 2.961901 |
